Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 2.4e-150 535.4 264 100.0
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.0e-67 260.0 257 49.8
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 3.4e-67 259.2 192 61.5
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.7e-66 256.9 257 50.2
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 6.4e-66 255.0 190 58.9
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.1e-65 254.2 236 53.8
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 1.1e-65 254.2 248 50.4
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 2.4e-65 253.1 192 59.4
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 2.4e-65 253.1 225 53.8
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 4.1e-65 252.3 198 57.6
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 5.4e-65 251.9 195 57.9
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 5.4e-65 251.9 256 48.0
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 5.4e-65 251.9 225 53.8
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 7.0e-65 251.5 233 52.4
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 9.2e-65 251.1 234 51.3
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 9.2e-65 251.1 234 51.7
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.2e-64 250.8 245 51.4
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.2e-64 250.8 256 52.0
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.6e-64 250.4 232 51.3
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 1.6e-64 250.4 234 51.7
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 3.5e-64 249.2 256 48.4
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 3.5e-64 249.2 259 49.8
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 4.6e-64 248.8 198 55.6
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 4.6e-64 248.8 198 55.6
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 4.6e-64 248.8 194 58.2
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 4.6e-64 248.8 257 47.9
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 6.0e-64 248.4 232 50.9
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 6.0e-64 248.4 198 57.6
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 6.0e-64 248.4 257 47.9
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 7.8e-64 248.1 246 48.4
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 7.8e-64 248.1 234 52.1
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 7.8e-64 248.1 257 49.0
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 7.8e-64 248.1 238 49.6
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.0e-63 247.7 198 57.1
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 1.0e-63 247.7 234 50.4
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.0e-63 247.7 194 58.2
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 1.7e-63 246.9 257 47.5
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 2.3e-63 246.5 198 55.1
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 2.3e-63 246.5 234 50.9
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.0e-63 246.1 252 50.0
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 3.0e-63 246.1 232 51.7
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 3.0e-63 246.1 256 49.6
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 3.9e-63 245.7 234 50.9
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 3.9e-63 245.7 249 50.2
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.0e-63 245.4 198 56.6
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 5.0e-63 245.4 232 50.4
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.1e-62 244.2 234 50.4
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 1.1e-62 244.2 266 48.1
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 1.5e-62 243.8 259 48.6
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 2.5e-62 243.0 231 50.6
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.5e-62 243.0 233 51.5
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 3.3e-62 242.7 229 50.7
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 3.3e-62 242.7 192 57.3
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 3.3e-62 242.7 190 57.4
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 4.3e-62 242.3 233 51.1
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 4.3e-62 242.3 251 48.2
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 4.3e-62 242.3 232 51.3
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.3e-62 242.3 232 51.3
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 5.6e-62 241.9 192 56.8
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 5.6e-62 241.9 253 49.0
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 7.3e-62 241.5 266 47.0
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 7.3e-62 241.5 192 56.8
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 9.5e-62 241.1 229 50.7
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 9.5e-62 241.1 194 58.2
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 9.5e-62 241.1 194 58.2
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 9.5e-62 241.1 253 48.6
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 9.5e-62 241.1 253 48.2
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 1.2e-61 240.7 259 47.1
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 1.2e-61 240.7 235 51.1
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 1.2e-61 240.7 200 56.0
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 1.2e-61 240.7 192 56.2
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 2.8e-61 239.6 191 57.1
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 2.8e-61 239.6 251 49.0
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 2.8e-61 239.6 201 57.7
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 3.6e-61 239.2 234 51.3
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 4.7e-61 238.8 183 59.0
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 4.7e-61 238.8 192 55.7
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 6.2e-61 238.4 191 55.0
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 6.2e-61 238.4 258 46.5
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 6.2e-61 238.4 234 49.6
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 6.2e-61 238.4 236 49.2
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.1e-60 237.7 192 55.7
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 1.1e-60 237.7 254 48.0
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 1.1e-60 237.7 199 54.3
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.4e-60 237.3 229 49.8
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 1.4e-60 237.3 229 49.3
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 1.8e-60 236.9 249 49.0
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 1.8e-60 236.9 201 54.7
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 1.8e-60 236.9 233 50.6
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.8e-60 236.9 229 49.3
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 2.3e-60 236.5 192 57.3
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 2.3e-60 236.5 253 47.8
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 4.0e-60 235.7 186 62.4
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 5.2e-60 235.3 192 54.7
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 5.2e-60 235.3 192 54.7
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 5.2e-60 235.3 192 54.7
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 5.2e-60 235.3 192 54.7
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 5.2e-60 235.3 251 47.8
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 6.8e-60 235.0 199 55.3
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 6.8e-60 235.0 191 55.0
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 1.2e-59 234.2 192 54.2
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 1.2e-59 234.2 247 48.6
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 1.5e-59 233.8 179 60.9
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 2.0e-59 233.4 191 55.0
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 2.0e-59 233.4 264 45.5
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 2.6e-59 233.0 203 54.7
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 2.6e-59 233.0 191 55.0
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 7.5e-59 231.5 252 46.4
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 7.5e-59 231.5 259 45.9
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 9.8e-59 231.1 252 49.2
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 1.3e-58 230.7 251 47.8
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 2.9e-58 229.6 174 59.8
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 4.9e-58 228.8 192 54.2
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 8.3e-58 228.0 259 45.6
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 3.2e-57 226.1 236 48.3
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 9.2e-57 224.6 234 47.9
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.2e-56 224.2 176 57.4
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 2.7e-56 223.0 198 51.0
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 1.0e-55 221.1 175 59.4
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 3.9e-55 219.2 185 53.0
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 3.9e-55 219.2 185 53.5
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 3.9e-55 219.2 185 53.0
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 8.6e-55 218.0 175 57.1
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 8.6e-55 218.0 175 57.1
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.2e-53 214.2 233 45.5
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 1.6e-53 213.8 175 59.4
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 2.1e-53 213.4 192 52.6
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 6.8e-52 208.4 209 48.8
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 6.4e-50 201.8 173 56.1
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 9.2e-49 198.0 234 45.3
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.1e-48 196.8 198 49.5
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 7.8e-48 194.9 153 57.5
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 7.8e-48 194.9 174 56.9
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 1.3e-47 194.1 149 60.4
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 2.5e-46 189.9 147 59.9
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 2.5e-46 189.9 147 59.9
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 9.9e-43 177.9 133 60.9
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 6.4e-42 175.3 203 44.3
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.4e-36 156.8 135 51.9
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 1.2e-35 154.5 169 45.0
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 7.9e-32 141.7 109 59.6
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 5.6e-30 135.6 187 40.1
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 5.6e-30 135.6 187 40.1
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 3.4e-27 126.3 133 44.4
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 5.5e-25 119.0 88 59.1
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 3.1e-20 103.2 174 33.3
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 1.7e-18 97.4 193 32.1
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 2.2e-18 97.1 73 61.6
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 1.4e-17 94.4 66 60.6
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 7.1e-17 92.0 73 56.2
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 1.1e-12 78.2 108 42.6
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 4.1e-12 76.3 74 50.0
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 1.1e-09 68.2 68 41.2
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 1.1e-09 68.2 68 41.2
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 1.3e-07 61.2 209 29.2
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 1.8e-07 60.8 94 40.4
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 2.3e-07 60.5 83 42.2
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 3.3e-06 56.6 51 52.9


User provided reference genes

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