Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0184s0021 Marchantia polymorpha HOM05D007330 ORTHO05D009368 1.7e-114 416.0 214 100.0
Pp3c18_13360 Physcomitrium patens HOM05D007330 ORTHO05D009368 7.3e-28 128.3 116 52.6
AagrBONN_evm.TU.Sc2ySwM_228.4164 Anthoceros agrestis HOM05D007330 ORTHO05D009368 1.8e-26 123.6 129 47.3
FvH4_3g31190 Fragaria vesca HOM05D007330 ORTHO05D009368 8.1e-19 98.2 119 44.5
FAN11G3216 Fragaria x ananassa HOM05D007330 ORTHO05D009368 8.1e-19 98.2 119 44.5
FAN25G0306 Fragaria x ananassa HOM05D007330 ORTHO05D009368 1.1e-18 97.8 119 43.7
FAN21G2017 Fragaria x ananassa HOM05D007330 ORTHO05D009368 1.4e-18 97.4 119 43.7
RcHm_v2.0_Chr5g0057841 Rosa chinensis HOM05D007330 ORTHO05D009368 1.4e-18 97.4 142 41.5
Cc01_g10610 Coffea canephora HOM05D007330 ORTHO05D009368 5.2e-18 95.5 108 47.2
SEGI_17989 Sequoiadendron giganteum HOM05D007330 ORTHO05D009368 5.2e-18 95.5 114 40.4
Manes.11G150100 Manihot esculenta HOM05D007330 ORTHO05D009368 6.8e-18 95.1 119 43.7
CANSAT35G1795 Cannabis sativa HOM05D007330 ORTHO05D009368 8.9e-18 94.7 115 47.0
THA.LOC104814822 Tarenaya hassleriana HOM05D007330 ORTHO05D009368 1.2e-17 94.4 119 45.4
Ciclev10029423m.g Citrus clementina HOM05D007330 ORTHO05D009368 1.5e-17 94.0 119 42.9
Sp5g16210 Schrenkiella parvula HOM05D007330 ORTHO05D009368 2.0e-17 93.6 127 44.9
DCAR_018785 Daucus carota HOM05D007330 ORTHO05D009368 4.4e-17 92.4 117 43.6
ECA248G2053 Erigeron canadensis HOM05D007330 ORTHO05D009368 4.4e-17 92.4 108 45.4
Potri.009G008400 Populus trichocarpa HOM05D007330 ORTHO05D009368 5.8e-17 92.0 146 39.0
TAR636G1893 Trochodendron aralioides HOM05D007330 ORTHO05D009368 7.6e-17 91.7 119 43.7
BcaC09g49699 Brassica carinata HOM05D007330 ORTHO05D009368 9.9e-17 91.3 126 44.4
C01p33810 Brassica napus HOM05D007330 ORTHO05D009368 9.9e-17 91.3 126 44.4
BolC1t03342H Brassica oleracea HOM05D007330 ORTHO05D009368 9.9e-17 91.3 126 44.4
MD11G1142300 Malus domestica HOM05D007330 ORTHO05D009368 9.9e-17 91.3 142 43.0
TWI31G1101 Tripterygium wilfordii HOM05D007330 ORTHO05D009368 9.9e-17 91.3 113 46.9
CSS0040476 Camellia sinensis var. sinensis HOM05D007330 ORTHO05D009368 1.3e-16 90.9 125 43.2
Lalb_Chr19g0137021 Lupinus albus HOM05D007330 ORTHO05D009368 1.3e-16 90.9 119 43.7
QL01p015978 Quercus lobata HOM05D007330 ORTHO05D009368 1.3e-16 90.9 109 46.8
BcaB05g23421 Brassica carinata HOM05D007330 ORTHO05D009368 1.7e-16 90.5 120 43.3
A01p26570 Brassica napus HOM05D007330 ORTHO05D009368 1.7e-16 90.5 120 43.3
BraA01t02587Z Brassica rapa HOM05D007330 ORTHO05D009368 1.7e-16 90.5 120 43.3
Lj3g0015691 Lotus japonicus HOM05D007330 ORTHO05D009368 1.7e-16 90.5 115 44.3
PGR119G1592 Punica granatum HOM05D007330 ORTHO05D009368 1.7e-16 90.5 133 36.1
MSTRG.18683 Avicennia marina HOM05D007330 ORTHO05D009368 2.9e-16 89.7 108 45.4
Eucgr.J00897 Eucalyptus grandis HOM05D007330 ORTHO05D009368 2.9e-16 89.7 121 41.3
CiPaw.13G117900 Carya illinoinensis HOM05D007330 ORTHO05D009368 3.8e-16 89.4 124 39.5
COL.COLO4_34706 Corchorus olitorius HOM05D007330 ORTHO05D009368 3.8e-16 89.4 124 38.7
Atru.chr3.3558 Acer truncatum HOM05D007330 ORTHO05D009368 4.9e-16 89.0 121 41.3
AT3G45050 Arabidopsis thaliana HOM05D007330 ORTHO05D009368 4.9e-16 89.0 116 44.0
Carub.0005s1083 Capsella rubella HOM05D007330 ORTHO05D009368 4.9e-16 89.0 116 42.2
Lsat_1_v5_gn_1_63180 Lactuca sativa HOM05D007330 ORTHO05D009368 4.9e-16 89.0 143 36.4
Dinv34698 Davidia involucrata HOM05D007330 ORTHO05D009368 6.4e-16 88.6 123 42.3
AUR62022766 Chenopodium quinoa HOM05D007330 ORTHO05D009368 8.4e-16 88.2 130 44.6
Thhalv10002688m.g Eutrema salsugineum HOM05D007330 ORTHO05D009368 8.4e-16 88.2 112 45.5
Peaxi162Scf00064g00193 Petunia axillaris HOM05D007330 ORTHO05D009368 8.4e-16 88.2 121 44.6
Glyma.11G195100 Glycine max HOM05D007330 ORTHO05D009368 1.1e-15 87.8 118 41.5
HanXRQChr11g0346411 Helianthus annuus HOM05D007330 ORTHO05D009368 1.1e-15 87.8 108 44.4
CARHR150920 Cardamine hirsuta HOM05D007330 ORTHO05D009368 1.4e-15 87.4 115 43.5
Hma1.2p1_0569F.1_g180250 Hydrangea macrophylla HOM05D007330 ORTHO05D009368 1.4e-15 87.4 112 44.6
SMO275G0064 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 1.4e-15 87.4 115 40.0
Glyma.12G079000 Glycine max HOM05D007330 ORTHO05D009368 1.9e-15 87.0 131 39.7
Medtr4g057845 Medicago truncatula HOM05D007330 ORTHO05D009368 2.4e-15 86.7 118 40.7
SMO367G0878 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 2.4e-15 86.7 115 40.0
Thecc.09G347600 Theobroma cacao HOM05D007330 ORTHO05D009368 2.4e-15 86.7 138 37.7
Aa31LG4G14100 Aethionema arabicum HOM05D007330 ORTHO05D009368 3.2e-15 86.3 109 41.3
Ca_19301_v3 Cicer arietinum L. HOM05D007330 ORTHO05D009368 3.2e-15 86.3 115 42.6
Migut.N02576 Erythranthe guttata HOM05D007330 ORTHO05D009368 3.2e-15 86.3 108 42.6
vmacro03274 Vaccinium macrocarpon HOM05D007330 ORTHO05D009368 3.2e-15 86.3 177 35.0
Nn2g13766 Nelumbo nucifera HOM05D007330 ORTHO05D009368 4.1e-15 85.9 108 43.5
Rhsim13G0098500 Rhododendron simsii HOM05D007330 ORTHO05D009368 5.4e-15 85.5 115 41.7
CBR_g54316 Chara braunii HOM05D007330 ORTHO05D009368 7.1e-15 85.1 146 37.0
Gohir.D05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 7.1e-15 85.1 108 42.6
Actinidia07167 Actinidia chinensis HOM05D007330 ORTHO05D009368 9.2e-15 84.7 86 48.8
arahy.Tifrunner.gnm1.ann1.V5GM9G Arachis hypogaea HOM05D007330 ORTHO05D009368 1.2e-14 84.3 122 43.4
Gohir.A05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 1.2e-14 84.3 108 41.7
arahy.Tifrunner.gnm1.ann1.PP0PHB Arachis hypogaea HOM05D007330 ORTHO05D009368 1.6e-14 84.0 140 40.7
PSO801G0259 Papaver somniferum HOM05D007330 ORTHO05D009368 1.6e-14 84.0 71 53.5
GSVIVG01031517001 Vitis vinifera HOM05D000070 ORTHO05D001255 1.6e-14 84.0 108 49.1
Psat4g155560 Pisum sativum HOM05D007330 ORTHO05D009368 2.7e-14 83.2 117 41.0
AL5G23540 Arabidopsis lyrata HOM05D007330 ORTHO05D009368 3.5e-14 82.8 77 53.2
MBI18_g25263_MAGBIO Magnolia biondii HOM05D007330 ORTHO05D009368 3.5e-14 82.8 75 53.3
Sed0025524 Sechium edule HOM05D007330 ORTHO05D009368 3.5e-14 82.8 120 38.3
MELO3C004968.2 Cucumis melo HOM05D007330 ORTHO05D009368 4.6e-14 82.4 120 40.0
PSO339G1528 Papaver somniferum HOM05D007330 ORTHO05D009368 4.6e-14 82.4 117 36.8
SGA_v2.0_scaffold116G32214 Striga asiatica HOM05D007330 ORTHO05D009368 4.6e-14 82.4 101 46.5
ClCG03G002650 Citrullus lanatus HOM05D007330 ORTHO05D009368 7.8e-14 81.6 120 39.2
Solyc04g007410.4 Solanum lycopersicum HOM05D007330 ORTHO05D009368 1.3e-13 80.9 111 37.8
Sopen04g002470 Solanum pennellii HOM05D007330 ORTHO05D009368 1.3e-13 80.9 111 37.8
CsaV3_1G013380 Cucumis sativus L. HOM05D007330 ORTHO05D009368 1.7e-13 80.5 120 39.2
Nitab4.5_0000567g0040 Nicotiana tabacum HOM05D007330 ORTHO05D009368 1.7e-13 80.5 125 37.6
Ah.01g003130 Amaranthus hybridus HOM05D007330 ORTHO05D009368 3.0e-13 79.7 120 39.2
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 3.0e-13 79.7 118 36.4
Sc15g0001620 Simmondsia chinensis HOM05D007330 ORTHO05D009368 3.0e-13 79.7 110 44.5
CAN.G1577.6 Capsicum annuum HOM05D007330 ORTHO05D009368 6.6e-13 78.6 110 40.0
Phvul.011G083600 Phaseolus vulgaris HOM05D007330 ORTHO05D009368 1.5e-12 77.4 92 42.4
VMungo1127G0312 Vigna mungo HOM05D007330 ORTHO05D009368 1.5e-12 77.4 124 36.3
Peaxi162Scf00597g00033 Petunia axillaris HOM05D007330 ORTHO05D009368 4.3e-12 75.9 116 44.0
Os06g0731300 Oryza sativa ssp. japonica HOM05D007330 ORTHO05D009368 2.1e-11 73.6 70 48.6
MD03G1125100 Malus domestica HOM05D007330 ORTHO05D009368 6.9e-10 68.6 53 60.4
Peaxi162Scf00958g00023 Petunia axillaris HOM05D007330 ORTHO05D009368 6.4e-08 62.0 97 45.4
Lj1A195G28 Lonicera japonica HOM05D007330 ORTHO05D009368 7.1e-07 58.5 113 37.2
Sabra09G0004900 Salix brachista HOM05D007330 ORTHO05D009368 1.6e-06 57.4 96 36.5
Aqoxy2G01788 Aquilegia oxysepala HOM05D007330 ORTHO05D009368 3.5e-06 56.2 96 36.5
Prupe.6G107600 Prunus persica HOM05D007330 ORTHO05D009368 6.0e-06 55.5 96 35.4


User provided reference genes

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