Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 6.6e-243 843.6 415 100.0
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 4.5e-90 335.9 251 64.5
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 5.1e-78 295.8 202 63.9
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 4.3e-77 292.7 202 63.4
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 1.4e-75 287.7 259 53.7
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 1.8e-75 287.3 200 63.0
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 3.1e-75 286.6 229 57.6
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 3.1e-75 286.6 201 61.7
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 3.1e-75 286.6 201 61.7
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 4.1e-75 286.2 205 61.5
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 5.3e-75 285.8 201 61.7
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 6.9e-75 285.4 222 58.6
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 6.9e-75 285.4 201 62.2
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 1.2e-74 284.6 198 62.6
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 2.0e-74 283.9 201 60.7
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 2.0e-74 283.9 222 58.1
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 2.0e-74 283.9 207 59.9
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 3.4e-74 283.1 207 59.4
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 3.4e-74 283.1 201 60.7
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 4.5e-74 282.7 261 52.5
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 4.5e-74 282.7 201 61.2
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 4.5e-74 282.7 210 60.5
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 5.9e-74 282.3 200 60.5
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 5.9e-74 282.3 201 61.7
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 7.6e-74 282.0 199 61.3
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 7.6e-74 282.0 201 60.2
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 7.6e-74 282.0 213 60.1
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 7.6e-74 282.0 201 61.2
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 7.6e-74 282.0 224 58.5
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 1.0e-73 281.6 198 61.6
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.0e-73 281.6 207 59.4
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 1.3e-73 281.2 197 61.4
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 1.3e-73 281.2 207 59.9
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 1.7e-73 280.8 203 59.6
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 1.7e-73 280.8 222 56.8
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 2.9e-73 280.0 200 61.0
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 2.9e-73 280.0 200 61.0
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.9e-73 280.0 224 57.6
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 2.9e-73 280.0 224 57.6
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 3.8e-73 279.6 224 57.1
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 3.8e-73 279.6 265 51.3
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 5.0e-73 279.3 200 60.0
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 5.0e-73 279.3 200 60.0
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 5.0e-73 279.3 222 56.8
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 6.5e-73 278.9 324 44.4
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 8.5e-73 278.5 200 61.0
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 8.5e-73 278.5 202 59.4
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 8.5e-73 278.5 200 61.0
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 8.5e-73 278.5 205 60.0
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 1.1e-72 278.1 198 61.1
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 1.1e-72 278.1 199 61.8
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 1.1e-72 278.1 200 59.5
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 1.4e-72 277.7 215 59.1
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 1.4e-72 277.7 200 61.5
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 1.4e-72 277.7 199 60.3
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 1.4e-72 277.7 200 60.0
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 1.4e-72 277.7 201 60.7
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 1.9e-72 277.3 200 60.5
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 1.9e-72 277.3 201 60.2
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.9e-72 277.3 201 60.2
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.9e-72 277.3 201 60.2
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.9e-72 277.3 203 60.1
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 1.9e-72 277.3 199 60.3
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 2.5e-72 276.9 200 60.0
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 2.5e-72 276.9 284 49.3
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 3.2e-72 276.6 201 60.2
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 3.2e-72 276.6 276 49.3
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 5.5e-72 275.8 200 59.0
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 5.5e-72 275.8 202 59.4
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 5.5e-72 275.8 200 60.0
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 7.2e-72 275.4 200 60.0
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 7.2e-72 275.4 201 61.7
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 7.2e-72 275.4 200 60.0
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 7.2e-72 275.4 198 60.6
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 9.3e-72 275.0 200 59.5
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 1.6e-71 274.2 219 56.2
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 1.6e-71 274.2 201 59.7
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 1.6e-71 274.2 221 56.6
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 1.6e-71 274.2 201 59.2
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 2.1e-71 273.9 201 58.2
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 2.1e-71 273.9 257 51.0
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 2.1e-71 273.9 201 58.7
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.7e-71 273.5 216 58.8
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 2.7e-71 273.5 251 51.4
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 3.6e-71 273.1 312 46.8
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 3.6e-71 273.1 312 46.8
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 4.6e-71 272.7 305 46.9
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 4.6e-71 272.7 305 46.9
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 4.6e-71 272.7 254 51.6
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 6.1e-71 272.3 312 46.2
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 6.1e-71 272.3 201 59.2
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 7.9e-71 271.9 200 59.0
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 7.9e-71 271.9 210 57.6
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 1.0e-70 271.6 201 58.7
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 1.0e-70 271.6 201 58.7
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 1.3e-70 271.2 201 60.2
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 1.3e-70 271.2 244 52.0
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 1.3e-70 271.2 201 58.7
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 1.8e-70 270.8 201 58.7
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 1.8e-70 270.8 200 58.5
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 1.8e-70 270.8 198 59.6
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 2.3e-70 270.4 201 58.7
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 3.0e-70 270.0 201 58.2
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 3.0e-70 270.0 276 49.3
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 3.0e-70 270.0 214 56.5
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 6.7e-70 268.9 201 58.7
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 6.7e-70 268.9 274 48.5
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 6.7e-70 268.9 201 57.7
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 8.7e-70 268.5 206 56.3
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 8.7e-70 268.5 276 48.6
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 5.7e-69 265.8 261 49.0
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 5.7e-69 265.8 190 61.1
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 3.7e-68 263.1 201 57.7
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 3.7e-68 263.1 200 58.5
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.1e-67 261.5 231 52.4
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 9.1e-67 258.5 200 57.5
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 1.3e-65 254.6 209 56.5
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 2.9e-65 253.4 207 55.6
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 4.2e-64 249.6 257 47.5
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 2.3e-62 243.8 238 50.4
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 1.1e-59 235.0 199 53.8
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 1.3e-57 228.0 158 62.0
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 8.5e-57 225.3 159 61.0
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 6.1e-55 219.2 158 60.1
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 3.5e-50 203.4 312 39.4
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 2.2e-49 200.7 144 59.7
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 1.5e-48 198.0 140 60.0
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 8.8e-46 188.7 140 60.7
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 2.6e-45 187.2 137 59.1
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 3.3e-45 186.8 185 51.9
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 7.7e-42 175.6 122 65.6
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 5.0e-41 172.9 117 61.5
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 1.7e-36 157.9 149 49.0
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 5.9e-34 149.4 86 76.7
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 6.5e-33 146.0 152 45.4
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 3.7e-12 77.0 179 33.5
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 2.7e-10 70.9 127 33.1
SEGI_31523 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 1.0e-09 68.9 42 73.8
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 1.5e-08 65.1 175 29.7
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.4e-06 58.5 45 51.1
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 1.4e-06 58.5 43 58.1
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 1.8e-06 58.2 92 40.2
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 4.0e-06 57.0 72 40.3
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 5.2e-06 56.6 49 49.0


User provided reference genes

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