Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 0.0e+00 1176.8 624 100.0
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.3e-210 736.9 652 62.1
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 7.9e-208 727.6 648 61.6
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 3.9e-207 725.3 616 64.9
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 7.0e-196 688.0 648 56.3
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 4.7e-184 648.7 652 55.4
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 6.1e-168 595.1 651 49.2
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 3.6e-160 569.3 637 48.2
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 4.4e-158 562.4 662 47.0
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 7.5e-158 561.6 650 48.0
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 2.9e-157 559.7 654 47.9
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 3.5e-155 552.7 656 45.1
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 6.0e-155 552.0 654 47.7
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.9e-153 547.0 652 45.9
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 3.3e-153 546.2 649 47.0
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 4.3e-153 545.8 658 46.2
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 3.1e-151 539.7 660 46.2
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 1.5e-150 537.3 650 45.5
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 4.4e-150 535.8 637 46.2
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 1.3e-149 534.3 646 46.3
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.9e-149 533.1 646 46.3
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 8.3e-149 531.6 645 46.0
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 1.2e-147 527.7 648 45.2
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 1.2e-147 527.7 648 45.4
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 1.2e-147 527.7 644 45.5
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 1.6e-147 527.3 675 45.5
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-147 526.9 635 46.3
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 3.5e-147 526.2 620 46.6
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 6.0e-147 525.4 649 45.0
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 3.9e-146 522.7 655 44.7
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 1.9e-145 520.4 662 43.5
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 9.5e-145 518.1 655 44.7
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 8.1e-144 515.0 651 44.5
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.1e-143 514.6 650 44.2
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 1.8e-143 513.8 653 43.0
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 1.8e-143 513.8 658 44.7
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 2.3e-143 513.5 652 44.3
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 2.3e-143 513.5 637 44.4
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 2.3e-143 513.5 654 44.0
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 2.3e-143 513.5 653 44.1
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 5.2e-143 512.3 654 45.9
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 5.2e-143 512.3 647 44.5
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 6.8e-143 511.9 638 45.0
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 8.9e-143 511.5 655 44.0
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 8.9e-143 511.5 654 44.0
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.2e-142 511.1 654 45.4
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 1.2e-142 511.1 645 45.3
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.2e-142 511.1 649 44.1
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 1.2e-142 511.1 664 44.6
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 2.6e-142 510.0 655 43.1
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 2.6e-142 510.0 663 44.2
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.4e-142 509.6 621 46.7
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 4.4e-142 509.2 649 44.1
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 1.3e-141 507.7 648 42.6
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 2.2e-141 506.9 669 44.8
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 2.9e-141 506.5 645 44.8
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 2.9e-141 506.5 670 44.6
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 3.7e-141 506.1 653 43.6
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 3.7e-141 506.1 635 45.2
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 4.9e-141 505.8 664 43.4
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.9e-140 503.8 645 43.1
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 1.9e-140 503.8 654 43.7
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 2.4e-140 503.4 652 43.9
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 2.7e-139 500.0 686 42.7
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 3.5e-139 499.6 651 44.1
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 1.0e-138 498.0 653 43.8
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 1.3e-138 497.7 641 42.3
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 3.0e-138 496.5 651 43.2
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 3.9e-138 496.1 662 44.0
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 8.6e-138 495.0 662 43.2
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 1.1e-137 494.6 622 44.7
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 1.9e-137 493.8 636 43.9
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 1.9e-137 493.8 686 42.3
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 7.3e-137 491.9 667 43.0
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 7.3e-137 491.9 705 40.3
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.6e-136 489.6 648 41.7
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 8.1e-136 488.4 664 41.0
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.5e-134 484.2 646 42.6
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 3.4e-134 483.0 646 42.6
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 3.4e-134 483.0 642 43.9
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 5.8e-134 482.3 642 43.8
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 5.8e-134 482.3 682 40.8
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 9.9e-134 481.5 645 40.8
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 4.9e-133 479.2 646 42.1
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 8.4e-133 478.4 638 43.3
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 2.4e-132 476.9 638 43.4
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 2.4e-132 476.9 638 43.4
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 4.2e-132 476.1 641 43.1
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 5.4e-132 475.7 584 44.0
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 7.1e-132 475.3 631 43.4
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 9.3e-132 474.9 651 41.8
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 1.6e-131 474.2 650 42.8
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 6.0e-131 472.2 631 43.4
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 1.7e-130 470.7 642 42.8
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 1.7e-130 470.7 634 43.8
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 1.7e-130 470.7 655 41.4
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 5.1e-130 469.2 642 42.5
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 8.7e-130 468.4 650 41.7
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 1.3e-128 464.5 622 42.0
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 2.1e-128 463.8 642 42.1
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 3.1e-127 459.9 624 39.7
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 4.2e-124 449.5 646 40.1
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 1.7e-122 444.1 646 39.8
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 2.3e-122 443.7 657 39.1
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 1.9e-121 440.7 571 44.3
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.3e-120 438.0 540 43.9
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.4e-118 429.9 648 38.6
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 9.6e-113 411.8 545 41.7
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 2.8e-112 410.2 565 44.2
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 7.6e-110 402.1 618 40.5
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 4.2e-108 396.4 576 40.8
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 5.5e-108 396.0 541 39.7
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 6.7e-106 389.0 624 36.7
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 7.4e-105 385.6 598 40.0
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 5.8e-102 375.9 509 42.4
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 3.8e-101 373.2 527 40.8
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 5.1e-90 336.3 430 48.4
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.9e-85 320.5 405 42.0
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 1.3e-80 305.1 397 44.8
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 2.8e-72 277.3 426 37.8
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 1.9e-68 264.6 430 37.2
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 5.2e-58 229.9 242 47.1
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 8.3e-56 222.6 206 57.8
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 4.3e-52 210.3 247 44.5
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 3.6e-51 207.2 369 36.0
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 3.2e-47 194.1 447 28.9
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 8.3e-40 169.5 194 50.0
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 5.2e-34 150.2 213 39.0
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 6.8e-34 149.8 632 25.9
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 7.5e-33 146.4 172 43.0
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 4.9e-32 143.7 318 33.3
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 2.7e-30 137.9 218 36.2
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.7e-29 135.2 378 30.2
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.9e-28 131.7 133 52.6
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 4.7e-27 127.1 117 61.5
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 4.4e-25 120.6 213 33.3
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 5.6e-20 103.6 267 30.7
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 6.2e-19 100.1 109 45.0
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 3.1e-18 97.8 246 32.1
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 4.0e-18 97.4 185 34.1
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 8.9e-18 96.3 252 29.4
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 4.4e-17 94.0 103 45.6
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 1.1e-15 89.4 109 46.8
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 4.2e-15 87.4 236 28.0
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.8e-11 73.9 130 37.7
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 1.5e-09 68.9 60 61.7
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 2.6e-09 68.2 393 20.1
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.8e-09 67.0 134 36.6
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.6e-09 66.6 134 35.1
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 1.1e-07 62.8 153 34.0
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 1.4e-07 62.4 82 43.9
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 3.2e-07 61.2 86 40.7
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 4.2e-07 60.8 64 50.0
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.4e-07 60.5 66 50.0
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-06 58.5 68 50.0


User provided reference genes

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