Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 0.0e+00 1939.1 1162 100.0
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 3.2e-138 497.3 675 49.0
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 1.5e-119 435.3 1166 33.7
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 4.6e-116 423.7 693 43.0
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 1.5e-111 408.7 750 39.2
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.2e-109 401.0 763 38.8
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 1.5e-106 392.1 745 39.1
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 5.6e-106 390.2 762 37.8
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 1.8e-104 385.2 756 39.0
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 1.2e-103 382.5 715 39.0
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 2.0e-103 381.7 752 37.9
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 7.5e-103 379.8 715 38.9
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 1.0e-99 369.4 743 36.9
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 3.9e-99 367.5 751 37.0
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 1.5e-98 365.5 770 37.0
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 1.2e-97 362.5 757 36.9
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 8.1e-97 359.8 524 44.8
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 1.4e-96 359.0 549 43.5
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 4.0e-96 357.5 814 36.4
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 6.8e-96 356.7 790 36.1
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 3.4e-95 354.4 561 42.8
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 4.4e-95 354.0 612 40.5
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 1.7e-94 352.1 761 36.9
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 8.4e-94 349.7 783 35.5
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 8.4e-94 349.7 787 35.2
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 3.2e-93 347.8 752 36.3
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 4.1e-93 347.4 768 37.8
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 9.2e-93 346.3 758 36.9
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 1.6e-92 345.5 558 43.0
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 2.1e-92 345.1 792 35.0
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 2.3e-91 341.7 552 42.4
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 3.0e-91 341.3 758 36.8
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 1.9e-90 338.6 713 36.3
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 5.6e-90 337.0 759 36.0
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 9.6e-90 336.3 777 35.6
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 3.6e-89 334.3 725 35.6
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 8.1e-89 333.2 709 37.8
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 1.4e-88 332.4 766 35.1
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 3.1e-88 331.3 766 35.2
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 4.0e-88 330.9 758 35.1
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 4.4e-87 327.4 553 41.0
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 7.1e-85 320.1 743 35.5
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 7.1e-85 320.1 571 40.6
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 7.1e-85 320.1 765 36.3
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 9.3e-85 319.7 791 34.5
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.3e-83 315.8 688 37.2
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 3.0e-83 314.7 793 32.5
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 5.1e-83 313.9 507 43.6
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 8.7e-83 313.2 756 33.9
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.1e-82 312.8 769 34.3
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 2.5e-82 311.6 744 34.1
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 7.3e-82 310.1 751 34.4
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 9.6e-82 309.7 765 34.4
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 1.3e-81 309.3 740 35.3
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 6.9e-80 303.5 770 33.5
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 2.0e-79 302.0 545 39.3
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 2.0e-79 302.0 545 39.3
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 2.0e-79 302.0 769 34.6
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 2.2e-78 298.5 527 42.7
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 2.2e-78 298.5 755 34.2
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 5.4e-77 293.9 571 39.8
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 5.4e-77 293.9 571 39.8
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 9.3e-77 293.1 756 33.7
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 2.1e-76 292.0 685 35.0
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 3.5e-76 291.2 729 33.6
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 4.6e-76 290.8 760 35.0
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 6.0e-76 290.4 769 33.0
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 2.3e-75 288.5 755 34.0
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 3.0e-75 288.1 727 33.6
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 3.3e-74 284.6 755 33.4
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 9.6e-74 283.1 727 33.1
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 3.7e-73 281.2 752 33.2
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 4.8e-73 280.8 630 36.5
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 1.1e-72 279.6 752 33.6
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 9.0e-72 276.6 761 33.5
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 5.8e-71 273.9 527 39.1
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 2.9e-70 271.6 657 33.5
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 2.9e-70 271.6 745 32.8
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 1.4e-69 269.2 754 33.6
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 1.4e-69 269.2 718 33.3
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 2.4e-69 268.5 810 30.5
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 7.1e-69 266.9 774 31.8
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 9.3e-69 266.5 756 32.3
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 9.3e-69 266.5 753 31.6
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 2.1e-68 265.4 663 33.5
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 2.1e-68 265.4 653 32.6
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 1.3e-67 262.7 727 31.5
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 3.9e-67 261.2 734 32.4
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 5.6e-66 257.3 464 40.3
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 1.3e-65 256.1 762 32.8
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 1.6e-65 255.8 729 32.1
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.6e-65 255.8 729 32.1
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 2.6e-63 248.4 581 35.8
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 1.0e-62 246.5 758 30.9
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 1.1e-61 243.0 591 34.7
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 1.9e-61 242.3 758 31.0
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 7.1e-61 240.4 425 39.8
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 2.7e-60 238.4 514 36.8
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 2.7e-60 238.4 771 30.5
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 3.9e-59 234.6 753 30.8
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 1.7e-54 219.2 772 29.5
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 7.2e-53 213.8 762 29.4
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-51 209.1 377 40.6
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 6.9e-48 197.2 741 31.2
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.1e-45 189.9 285 43.2
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 7.4e-42 177.2 181 58.0
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.2e-39 169.9 270 40.7
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 3.4e-39 168.3 565 30.4
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 4.5e-39 167.9 197 53.3
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 2.6e-31 142.1 141 58.2
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.1e-29 136.7 236 39.4
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 4.2e-29 134.8 363 34.7
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 1.4e-27 129.8 120 62.5
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 1.5e-26 126.3 221 43.0
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 1.2e-20 106.7 129 51.9
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 4.4e-18 98.2 505 26.7
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 5.7e-18 97.8 95 66.3
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.7e-17 96.3 184 39.7
CBR_g34810 Chara braunii HOM05D043006 ORTHO05D000353 3.7e-17 95.1 133 44.4
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 7.7e-15 87.4 167 37.7
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 7.7e-15 87.4 465 27.7
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 1.7e-14 86.3 346 27.7
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 1.2e-12 80.1 76 59.2
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 8.0e-12 77.4 48 75.0
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 2.3e-11 75.9 56 67.9
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 9.8e-10 70.5 82 45.1
CDE06G1033 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.7e-09 69.7 89 46.1


User provided reference genes

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