Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.1e-275 951.8 508 100.0
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 4.1e-138 495.7 430 61.4
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 2.3e-104 383.6 428 48.8
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.5e-103 380.2 410 49.0
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 9.6e-103 378.3 426 47.9
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 1.4e-101 374.4 436 48.2
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 6.9e-101 372.1 429 48.0
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 6.9e-101 372.1 405 48.6
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 5.8e-100 369.0 441 46.3
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.4e-98 364.4 404 49.0
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 1.2e-97 361.3 406 48.5
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 2.7e-97 360.1 430 45.8
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 2.7e-97 360.1 408 47.8
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 6.0e-97 359.0 432 45.6
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.0e-96 358.2 433 46.0
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 3.9e-96 356.3 407 47.9
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 1.1e-95 354.8 428 45.8
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 1.1e-95 354.8 407 47.7
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 1.5e-95 354.4 429 45.5
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 4.3e-95 352.8 432 45.1
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 5.6e-95 352.4 404 49.0
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 7.4e-95 352.1 408 48.0
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 9.6e-95 351.7 434 47.2
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 9.6e-95 351.7 431 43.6
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.6e-94 350.9 404 49.3
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 1.6e-94 350.9 408 47.8
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.6e-94 350.9 431 43.6
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 2.1e-94 350.5 405 48.4
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 2.8e-94 350.1 411 46.2
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 3.7e-94 349.7 441 44.9
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 4.8e-94 349.4 407 47.4
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 4.8e-94 349.4 431 43.4
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 6.2e-94 349.0 407 47.4
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 8.1e-94 348.6 421 47.5
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 1.4e-93 347.8 438 44.3
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 1.4e-93 347.8 432 44.7
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 6.9e-93 345.5 413 46.7
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 6.9e-93 345.5 429 44.1
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 1.2e-92 344.7 411 47.4
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.0e-92 344.0 428 43.7
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 2.6e-92 343.6 433 43.4
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 4.5e-92 342.8 444 42.3
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 5.8e-92 342.4 430 44.0
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 5.8e-92 342.4 429 42.9
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 7.6e-92 342.0 424 45.5
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 7.6e-92 342.0 435 44.6
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 7.6e-92 342.0 422 45.5
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 1.3e-91 341.3 406 44.1
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 1.3e-91 341.3 412 45.1
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.7e-91 340.9 423 46.8
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 1.7e-91 340.9 430 44.2
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 1.7e-91 340.9 409 45.5
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 2.2e-91 340.5 423 46.8
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.2e-91 340.5 434 44.2
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 2.9e-91 340.1 427 45.0
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 2.9e-91 340.1 425 44.7
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 2.9e-91 340.1 425 44.7
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 4.9e-91 339.3 433 43.4
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 6.5e-91 339.0 425 44.2
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 6.5e-91 339.0 419 43.9
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 6.5e-91 339.0 439 43.3
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 8.4e-91 338.6 403 47.4
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 8.4e-91 338.6 407 47.4
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 8.4e-91 338.6 405 46.2
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 1.1e-90 338.2 406 46.6
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.9e-90 337.4 429 43.4
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 1.9e-90 337.4 404 45.8
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 3.2e-90 336.7 405 46.7
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 4.2e-90 336.3 427 44.0
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 4.2e-90 336.3 408 44.4
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 5.5e-90 335.9 425 44.0
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 7.1e-90 335.5 428 43.7
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 9.3e-90 335.1 430 44.2
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.2e-89 334.7 429 42.9
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 1.2e-89 334.7 396 46.5
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 1.6e-89 334.3 430 44.2
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 2.1e-89 334.0 405 44.0
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 2.7e-89 333.6 429 42.7
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 3.5e-89 333.2 435 43.2
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 3.5e-89 333.2 415 43.4
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 4.6e-89 332.8 406 44.1
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 4.6e-89 332.8 424 44.3
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 6.0e-89 332.4 410 45.1
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 7.9e-89 332.0 409 44.3
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 7.9e-89 332.0 425 43.8
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 7.9e-89 332.0 431 43.6
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 1.0e-88 331.6 413 44.8
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 1.3e-88 331.3 430 42.3
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 1.3e-88 331.3 390 46.2
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 3.0e-88 330.1 436 43.1
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 6.7e-88 328.9 413 44.6
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 8.7e-88 328.6 431 43.4
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 1.1e-87 328.2 414 43.7
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 2.5e-87 327.0 405 43.0
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 5.7e-87 325.9 414 44.4
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 5.7e-87 325.9 430 43.3
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 7.4e-87 325.5 406 45.8
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 9.6e-87 325.1 409 44.7
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 1.6e-86 324.3 404 42.3
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 8.2e-86 322.0 406 42.9
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.1e-85 321.6 421 43.7
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.4e-85 321.2 426 41.5
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 1.5e-84 317.8 421 43.0
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.5e-84 316.2 408 45.3
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 4.5e-84 316.2 467 40.5
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 1.0e-83 315.1 420 42.1
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 1.3e-83 314.7 432 41.9
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.2e-82 309.7 509 37.9
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 5.5e-82 309.3 431 40.4
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.2e-81 308.1 467 40.3
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 1.6e-81 307.8 315 54.0
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 6.1e-81 305.8 356 46.6
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 1.1e-79 301.6 429 40.3
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 1.1e-79 301.6 404 44.1
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.5e-79 301.2 431 40.8
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 4.3e-79 299.7 426 42.3
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 5.7e-79 299.3 426 40.6
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 6.9e-77 292.4 419 43.0
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 6.1e-73 279.3 378 42.3
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 1.8e-69 267.7 282 50.0
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 4.5e-68 263.1 425 38.1
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 1.3e-67 261.5 279 48.7
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 5.0e-67 259.6 406 38.7
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 1.4e-66 258.1 347 41.5
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 3.0e-64 250.4 427 37.2
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 5.3e-61 239.6 496 34.5
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.0e-61 239.2 427 38.2
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 3.5e-60 236.9 319 42.6
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 2.1e-57 227.6 138 79.0
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 4.1e-53 213.4 174 57.5
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 4.1e-53 213.4 408 32.6
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 1.9e-50 204.5 324 40.4
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 9.8e-47 192.2 186 53.2
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 2.8e-46 190.7 178 49.4
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.2e-41 175.3 175 52.0
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 2.7e-36 157.5 243 40.7
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 8.6e-35 152.5 319 31.0
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.2e-33 148.7 189 40.7
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.4e-32 145.2 190 40.5
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 2.9e-30 137.5 114 58.8
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 2.9e-30 137.5 403 29.3
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 1.3e-22 112.1 114 50.0
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.3e-19 102.1 149 40.3
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 9.5e-18 95.9 83 59.0
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 2.1e-17 94.7 99 48.5
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 6.2e-17 93.2 120 41.7
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.5e-15 88.6 395 24.8
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 8.3e-14 82.8 136 37.5
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 9.2e-13 79.3 243 30.0
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 5.6e-10 70.1 73 45.2
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 1.8e-08 65.1 460 22.0


User provided reference genes

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