Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0178s0015 Marchantia polymorpha HOM05D006663 ORTHO05D008269 1.8e-276 955.3 470 100.0
SEGI_30026 Sequoiadendron giganteum HOM05D006663 ORTHO05D008269 1.7e-194 682.9 465 65.4
Pp3c13_8720 Physcomitrium patens HOM05D006663 ORTHO05D008269 1.0e-191 673.7 464 65.9
Pp3c9_7850 Physcomitrium patens HOM05D006663 ORTHO05D008269 5.1e-191 671.4 465 69.2
Pp3c3_11450 Physcomitrium patens HOM05D006663 ORTHO05D008269 6.6e-191 671.0 464 65.7
SMO340G0268 Selaginella moellendorffii HOM05D006663 ORTHO05D008269 1.9e-190 669.5 465 69.7
QL09p027994 Quercus lobata HOM05D006663 ORTHO05D008269 1.4e-180 636.7 470 61.3
TAR636G2266 Trochodendron aralioides HOM05D006663 ORTHO05D008269 2.4e-180 636.0 465 61.1
GSVIVG01013975001 Vitis vinifera HOM05D006663 ORTHO05D008269 6.9e-180 634.4 465 61.9
CiPaw.07G185300 Carya illinoinensis HOM05D006663 ORTHO05D008269 9.0e-180 634.0 468 60.7
COL.COLO4_37343 Corchorus olitorius HOM05D006663 ORTHO05D008269 1.2e-179 633.6 462 62.3
Glyma.20G195600 Glycine max HOM05D006663 ORTHO05D008269 1.5e-179 633.3 465 61.3
TWI39G0071 Tripterygium wilfordii HOM05D006663 ORTHO05D008269 2.6e-179 632.5 465 62.4
Thecc.03G149200 Theobroma cacao HOM05D006663 ORTHO05D008269 3.4e-179 632.1 462 62.6
Aqoxy7G00844 Aquilegia oxysepala HOM05D006663 ORTHO05D008269 4.5e-179 631.7 462 62.3
Hma1.2p1_1580F.1_g291900 Hydrangea macrophylla HOM05D006663 ORTHO05D008269 9.9e-179 630.6 465 60.9
Phvul.007G136100 Phaseolus vulgaris HOM05D006663 ORTHO05D008269 1.7e-178 629.8 465 61.7
arahy.Tifrunner.gnm1.ann1.JS0B2B Arachis hypogaea HOM05D006663 ORTHO05D008269 4.9e-178 628.2 465 60.4
Lalb_Chr02g0150831 Lupinus albus HOM05D006663 ORTHO05D008269 4.9e-178 628.2 465 61.3
CSS0030206 Camellia sinensis var. sinensis HOM05D006663 ORTHO05D008269 8.4e-178 627.5 462 61.5
CSS0049195 Camellia sinensis var. sinensis HOM05D006663 ORTHO05D008269 8.4e-178 627.5 462 61.5
ClCG01G004680 Citrullus lanatus HOM05D006663 ORTHO05D008269 8.4e-178 627.5 469 60.6
VMungo0720G2856 Vigna mungo HOM05D006663 ORTHO05D008269 8.4e-178 627.5 465 60.9
Atru.chr1.907 Acer truncatum HOM05D006663 ORTHO05D008269 1.1e-177 627.1 466 61.8
Eucgr.A02922 Eucalyptus grandis HOM05D006663 ORTHO05D008269 1.9e-177 626.3 458 62.7
arahy.Tifrunner.gnm1.ann1.78X8E3 Arachis hypogaea HOM05D006663 ORTHO05D008269 2.4e-177 625.9 465 60.0
CsaV3_5G004880 Cucumis sativus L. HOM05D006663 ORTHO05D008269 3.2e-177 625.5 469 60.1
Gohir.A12G196700 Gossypium hirsutum HOM05D006663 ORTHO05D008269 4.2e-177 625.2 462 61.7
Rhsim03G0161500 Rhododendron simsii HOM05D006663 ORTHO05D008269 4.2e-177 625.2 462 61.3
Cpa.g.sc13.257 Carica papaya HOM05D006663 ORTHO05D008269 5.4e-177 624.8 465 61.3
Migut.F00523 Erythranthe guttata HOM05D006663 ORTHO05D008269 9.3e-177 624.0 462 60.0
Psat0s1505g0040 Pisum sativum HOM05D006663 ORTHO05D008269 9.3e-177 624.0 465 60.0
Actinidia13608 Actinidia chinensis HOM05D006663 ORTHO05D008269 1.2e-176 623.6 465 60.9
Os10g0563300 Oryza sativa ssp. japonica HOM05D006663 ORTHO05D008269 1.6e-176 623.2 468 62.0
Gorai.008G214300 Gossypium raimondii HOM05D006663 ORTHO05D008269 2.7e-176 622.5 462 61.5
Medtr1g090310 Medicago truncatula HOM05D006663 ORTHO05D008269 3.5e-176 622.1 465 60.2
Lj5g0020638 Lotus japonicus HOM05D006663 ORTHO05D008269 7.9e-176 620.9 465 60.6
ATR0057G058 Amborella trichopoda HOM05D006663 ORTHO05D008269 1.8e-175 619.8 469 59.5
MELO3C005467.2 Cucumis melo HOM05D006663 ORTHO05D008269 3.0e-175 619.0 469 59.3
CANSAT56G2550 Cannabis sativa HOM05D006663 ORTHO05D008269 5.1e-175 618.2 462 61.3
AL6G17900 Arabidopsis lyrata HOM05D006663 ORTHO05D008269 6.7e-175 617.8 462 62.6
CARHR205560 Cardamine hirsuta HOM05D006663 ORTHO05D008269 6.7e-175 617.8 462 62.8
Cc02_g04690 Coffea canephora HOM05D006663 ORTHO05D008269 1.1e-174 617.1 462 62.8
AT5G07590 Arabidopsis thaliana HOM05D006663 ORTHO05D008269 1.9e-174 616.3 462 62.6
Oeu042534.1 Olea europaea HOM05D006663 ORTHO05D008269 1.9e-174 616.3 462 59.3
SGA_v2.0_scaffold60G20812 Striga asiatica HOM05D006663 ORTHO05D008269 2.5e-174 615.9 462 58.7
Carub.0006s0657 Capsella rubella HOM05D006663 ORTHO05D008269 4.3e-174 615.1 462 62.3
Sabra03G0109600 Salix brachista HOM05D006663 ORTHO05D008269 5.6e-174 614.8 476 58.8
Sed0007931 Sechium edule HOM05D006663 ORTHO05D008269 5.6e-174 614.8 462 60.8
BcaC06g32493 Brassica carinata HOM05D006663 ORTHO05D008269 7.4e-174 614.4 462 60.2
Sp6g35280 Schrenkiella parvula HOM05D006663 ORTHO05D008269 9.6e-174 614.0 462 63.4
Thhalv10013487m.g Eutrema salsugineum HOM05D006663 ORTHO05D008269 1.6e-173 613.2 462 62.3
Potri.003G151400 Populus trichocarpa HOM05D006663 ORTHO05D008269 1.6e-173 613.2 466 60.3
MSTRG.8846 Avicennia marina HOM05D006663 ORTHO05D008269 2.1e-173 612.8 462 59.1
DCAR_020172 Daucus carota HOM05D006663 ORTHO05D008269 2.8e-173 612.5 465 60.4
Lj1C976T20 Lonicera japonica HOM05D006663 ORTHO05D008269 2.8e-173 612.5 466 59.0
MD07G1249200 Malus domestica HOM05D006663 ORTHO05D008269 6.2e-173 611.3 466 59.9
Sopen03g024320 Solanum pennellii HOM05D006663 ORTHO05D008269 6.2e-173 611.3 453 63.1
PGSC0003DMG400010747 Solanum tuberosum HOM05D006663 ORTHO05D008269 8.1e-173 610.9 453 63.1
RcHm_v2.0_Chr1g0373701 Rosa chinensis HOM05D006663 ORTHO05D008269 1.4e-172 610.1 457 61.1
FAN06G2606 Fragaria x ananassa HOM05D006663 ORTHO05D008269 1.8e-172 609.8 457 61.1
Manes.14G038500 Manihot esculenta HOM05D006663 ORTHO05D008269 1.8e-172 609.8 465 59.6
Potri.001G079100 Populus trichocarpa HOM05D006663 ORTHO05D008269 1.8e-172 609.8 465 61.5
A10p29330 Brassica napus HOM05D006663 ORTHO05D008269 3.1e-172 609.0 462 60.0
C09p69700 Brassica napus HOM05D006663 ORTHO05D008269 3.1e-172 609.0 462 59.7
BolC9t59713H Brassica oleracea HOM05D006663 ORTHO05D008269 3.1e-172 609.0 462 59.7
FvH4_7g26970 Fragaria vesca HOM05D006663 ORTHO05D008269 3.1e-172 609.0 457 61.1
Lsat_1_v5_gn_8_9600 Lactuca sativa HOM05D006663 ORTHO05D008269 3.1e-172 609.0 462 59.3
Sc10g0004730 Simmondsia chinensis HOM05D006663 ORTHO05D008269 5.3e-172 608.2 462 59.1
CANSAT56G3894 Cannabis sativa HOM05D006663 ORTHO05D008269 9.0e-172 607.4 462 60.2
HanXRQChr05g0138181 Helianthus annuus HOM05D006663 ORTHO05D008269 9.0e-172 607.4 464 58.8
PSO675G3877 Papaver somniferum HOM05D006663 ORTHO05D008269 2.0e-171 606.3 460 59.6
PSO732G0765 Papaver somniferum HOM05D006663 ORTHO05D008269 2.0e-171 606.3 453 60.0
FAN06G1593 Fragaria x ananassa HOM05D006663 ORTHO05D008269 2.6e-171 605.9 457 60.8
Sabra01G0056700 Salix brachista HOM05D006663 ORTHO05D008269 2.6e-171 605.9 458 62.0
MD01G1177500 Malus domestica HOM05D006663 ORTHO05D008269 4.5e-171 605.1 454 60.8
Aa31LG3G18830 Aethionema arabicum HOM05D006663 ORTHO05D008269 5.8e-171 604.7 489 58.9
THA.LOC104801603 Tarenaya hassleriana HOM05D006663 ORTHO05D008269 1.1e-169 600.5 465 58.5
ECA233G2092 Erigeron canadensis HOM05D006663 ORTHO05D008269 2.5e-169 599.4 459 58.2
Hund24931 Selenicereus undatus HOM05D006663 ORTHO05D008269 2.5e-169 599.4 469 57.6
EL10Ac7g15901 Beta vulgaris HOM05D006663 ORTHO05D008269 8.2e-165 584.3 462 56.9
TPR.G13385 Trifolium pratense HOM05D006663 ORTHO05D008269 4.0e-164 582.0 503 54.3
Ciclev10004937m.g Citrus clementina HOM05D006663 ORTHO05D008269 1.2e-163 580.5 466 59.9
AUR62009686 Chenopodium quinoa HOM05D006663 ORTHO05D008269 1.0e-162 577.4 462 58.7
Glyma.10G194400 Glycine max HOM05D006663 ORTHO05D008269 1.1e-161 573.9 465 57.6
CBR_g49329 Chara braunii HOM05D006663 ORTHO05D008269 1.5e-158 563.5 465 57.2
Nn1g00884 Nelumbo nucifera HOM05D006663 ORTHO05D008269 2.8e-157 559.3 465 56.8
Prupe.2G272800 Prunus persica HOM05D006663 ORTHO05D008269 1.8e-156 556.6 465 55.9
SHI14080 Sapria himalayana HOM05D006663 ORTHO05D008269 4.6e-152 542.0 501 51.3
HPP92_025692 Vanilla planifolia HOM05D006663 ORTHO05D008269 2.8e-149 532.7 398 60.6
AUR62001890 Chenopodium quinoa HOM05D006663 ORTHO05D008269 6.3e-149 531.6 462 52.6
PGR042G0458 Punica granatum HOM05D006663 ORTHO05D008269 8.8e-135 484.6 462 50.6
AagrBONN_evm.TU.Sc2ySwM_228.1080 Anthoceros agrestis HOM05D006663 ORTHO05D008269 1.7e-133 480.3 350 69.4
Ca_10369_v3 Cicer arietinum L. HOM05D006663 ORTHO05D008269 1.9e-129 466.8 353 61.5
Ca_10419_v3 Cicer arietinum L. HOM05D006663 ORTHO05D008269 1.9e-129 466.8 353 61.5
Nitab4.5_0007080g0010 Nicotiana tabacum HOM05D006663 ORTHO05D008269 1.9e-129 466.8 348 63.8
Haze_22195 Corylus avellana HOM05D006663 ORTHO05D008269 9.4e-129 464.5 352 61.4
SalBow3G3051 Salvia bowleyana HOM05D006663 ORTHO05D008269 3.0e-127 459.5 348 60.9
vmacro06835 Vaccinium macrocarpon HOM05D006663 ORTHO05D008269 3.0e-127 459.5 349 63.0
Gohir.D09G034800 Gossypium hirsutum HOM05D006663 ORTHO05D008269 1.2e-126 457.6 348 61.5
Gohir.A09G080000 Gossypium hirsutum HOM05D006663 ORTHO05D008269 7.5e-126 454.9 348 60.9
FAN10G3253 Fragaria x ananassa HOM05D006663 ORTHO05D008269 2.2e-125 453.4 349 60.5
FAN03G0477 Fragaria x ananassa HOM05D006663 ORTHO05D008269 3.5e-123 446.0 349 59.9
Dinv06596 Davidia involucrata HOM05D006663 ORTHO05D008269 5.0e-122 442.2 332 61.4
Nitab4.5_0021979g0010 Nicotiana tabacum HOM05D006663 ORTHO05D008269 7.5e-118 428.3 292 68.5
Gohir.D04G037700 Gossypium hirsutum HOM05D006663 ORTHO05D008269 3.7e-117 426.0 342 59.1
Solyc03g093490.3 Solanum lycopersicum HOM05D006663 ORTHO05D008269 7.7e-115 418.3 291 68.7
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 1.1e-113 414.5 348 59.5
Zm00001eb325360 Zea mays HOM05D006663 ORTHO05D008269 7.2e-113 411.8 277 67.9
SalBow3G2644 Salvia bowleyana HOM05D006663 ORTHO05D008269 1.4e-103 380.9 302 57.9
PRCOL_00004773 Prasinoderma coloniale HOM05D006663 ORTHO05D008269 3.1e-103 379.8 484 40.7
Gohir.D12G199100 Gossypium hirsutum HOM05D006663 ORTHO05D008269 1.2e-99 367.9 293 57.7
CDE09G0338 Ceratophyllum demersum HOM05D006663 ORTHO05D008269 2.6e-94 350.1 287 58.2
Cre13.g567150 Chlamydomonas reinhardtii HOM05D006663 ORTHO05D008269 1.1e-89 334.7 486 36.0
Solyc03g093500.3 Solanum lycopersicum HOM05D006663 ORTHO05D008269 1.0e-50 205.3 142 59.2
SHI00707 Sapria himalayana HOM05D006663 ORTHO05D008269 1.0e-37 162.2 163 47.9
Gohir.A03G137100 Gossypium hirsutum HOM05D006663 ORTHO05D008269 1.1e-36 158.7 110 64.5
Gohir.A07G166700 Gossypium hirsutum HOM05D006663 ORTHO05D008269 1.1e-36 158.7 110 64.5
Gohir.A09G003500 Gossypium hirsutum HOM05D006663 ORTHO05D008269 2.5e-36 157.5 110 63.6
Atru.chr4.2082 Acer truncatum HOM05D006663 ORTHO05D008269 4.1e-23 113.6 91 58.2
BcaC06g32421 Brassica carinata HOM05D006663 ORTHO05D008269 7.0e-07 59.7 40 65.0


User provided reference genes

Program Settings