Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 6.6e-290 1000.0 499 100.0
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 2.7e-126 456.4 516 47.3
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 1.2e-118 431.0 497 46.7
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 1.2e-113 414.5 494 47.0
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 1.1e-103 381.3 597 38.5
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.0e-96 358.2 483 40.4
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 3.2e-95 353.2 495 40.4
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.4e-93 347.8 491 40.1
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 4.0e-93 346.3 492 40.2
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 2.2e-91 340.5 489 39.7
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 6.3e-91 339.0 487 39.4
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 1.4e-90 337.8 488 39.1
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 1.4e-90 337.8 486 39.3
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 3.1e-90 336.7 486 40.1
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 5.4e-90 335.9 487 39.6
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 5.4e-90 335.9 470 39.6
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 9.1e-90 335.1 489 38.2
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 1.2e-89 334.7 503 39.2
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 1.2e-89 334.7 485 39.4
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 2.0e-89 334.0 490 38.8
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 3.5e-89 333.2 481 39.7
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 3.5e-89 333.2 477 39.4
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 4.5e-89 332.8 487 38.6
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 7.7e-89 332.0 486 37.9
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 7.7e-89 332.0 478 39.5
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 7.7e-89 332.0 485 39.4
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 7.7e-89 332.0 502 38.6
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 1.0e-88 331.6 495 38.8
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 1.3e-88 331.3 485 38.8
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 1.7e-88 330.9 483 39.8
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 1.7e-88 330.9 477 39.4
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 1.7e-88 330.9 478 39.3
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 1.7e-88 330.9 471 38.6
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 2.9e-88 330.1 490 37.3
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 2.9e-88 330.1 490 38.2
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 3.8e-88 329.7 488 38.3
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 1.5e-87 327.8 490 37.1
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 1.5e-87 327.8 498 38.0
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 1.5e-87 327.8 475 38.9
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 1.9e-87 327.4 489 38.4
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 2.5e-87 327.0 477 39.0
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 3.3e-87 326.6 487 38.8
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 4.3e-87 326.2 485 38.6
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 5.6e-87 325.9 487 37.6
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 5.6e-87 325.9 477 39.2
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 5.6e-87 325.9 488 38.7
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 9.5e-87 325.1 498 37.8
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 9.5e-87 325.1 497 38.0
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 1.6e-86 324.3 485 38.1
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 1.6e-86 324.3 479 37.6
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 3.6e-86 323.2 487 37.4
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 4.7e-86 322.8 478 37.9
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 4.7e-86 322.8 479 36.3
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 4.7e-86 322.8 485 37.9
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 4.7e-86 322.8 497 36.2
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 6.1e-86 322.4 492 38.0
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 8.0e-86 322.0 490 38.2
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 1.0e-85 321.6 483 37.9
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 1.4e-85 321.2 488 37.7
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 3.0e-85 320.1 489 36.6
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 3.0e-85 320.1 486 38.5
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 4.0e-85 319.7 487 37.8
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 8.9e-85 318.5 486 38.3
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 1.2e-84 318.2 485 37.3
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 1.5e-84 317.8 493 36.9
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 1.5e-84 317.8 487 37.2
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 3.4e-84 316.6 484 37.0
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 4.4e-84 316.2 489 37.4
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 4.4e-84 316.2 489 37.4
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 7.5e-84 315.5 481 39.7
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 9.8e-84 315.1 486 37.4
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 1.3e-83 314.7 474 38.4
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 1.7e-83 314.3 473 37.6
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 6.4e-83 312.4 486 37.0
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 6.4e-83 312.4 480 38.8
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 6.4e-83 312.4 487 37.6
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 8.3e-83 312.0 488 36.3
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 1.1e-82 311.6 487 38.0
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.8e-82 310.8 487 37.6
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 2.4e-82 310.5 483 37.5
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 3.2e-82 310.1 479 37.4
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 5.4e-82 309.3 476 37.6
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.4e-82 309.3 503 37.4
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 5.4e-82 309.3 466 38.0
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.2e-82 308.5 503 37.4
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.2e-81 308.1 503 37.4
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 2.7e-81 307.0 489 37.2
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 3.5e-81 306.6 497 36.6
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.3e-80 304.7 503 37.2
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.7e-80 304.3 504 37.3
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 2.3e-80 303.9 516 34.9
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 2.3e-80 303.9 488 37.5
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 5.0e-80 302.8 488 36.1
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.6e-80 302.4 503 37.0
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 2.5e-79 300.4 466 36.7
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 4.3e-79 299.7 463 37.4
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 5.6e-79 299.3 486 36.4
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 5.6e-79 299.3 472 37.5
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 1.6e-78 297.7 479 39.0
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 3.4e-76 290.0 470 36.2
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 3.5e-73 280.0 469 35.2
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 2.3e-72 277.3 473 37.6
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 1.1e-71 275.0 488 34.2
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 9.5e-71 271.9 362 39.2
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 8.1e-70 268.9 487 34.3
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 3.1e-69 266.9 494 33.4
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 7.8e-65 252.3 370 38.1
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 1.7e-64 251.1 380 37.1
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 8.6e-64 248.8 436 36.2
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 2.5e-63 247.3 485 34.0
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 1.4e-61 241.5 402 36.8
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 8.9e-61 238.8 349 39.0
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 2.4e-58 230.7 353 38.2
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 2.1e-49 201.1 322 35.1
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.5e-49 200.3 358 33.5
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 1.4e-45 188.3 388 32.2
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 9.9e-44 182.2 509 30.1
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 2.9e-43 180.6 327 35.5
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 9.3e-42 175.6 297 35.7
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 2.2e-35 154.5 208 39.4
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 1.9e-34 151.4 373 27.9
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 2.3e-32 144.4 260 32.7
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 6.7e-32 142.9 342 30.1
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 1.1e-29 135.6 495 26.7
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 2.0e-28 131.3 227 33.9
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.4e-26 125.2 239 33.9
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 4.6e-25 120.2 471 25.5
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 2.3e-24 117.9 471 25.3
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 8.7e-24 115.9 245 30.6
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.1e-21 109.0 192 34.9
Cfa026360 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.9e-18 98.2 518 24.5
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 2.3e-16 91.3 418 25.6
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 7.4e-15 86.3 197 35.0
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 1.5e-12 78.6 89 42.7
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 1.5e-12 78.6 122 36.9
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 4.5e-12 77.0 109 40.4
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 2.2e-11 74.7 106 34.0
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 1.1e-10 72.4 121 37.2
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 4.2e-10 70.5 192 28.6
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.2e-10 69.7 107 38.3
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 3.6e-09 67.4 78 47.4
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 3.6e-09 67.4 217 27.6
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 1.5e-07 62.0 130 31.5
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.4e-07 60.5 104 33.7
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 2.2e-06 58.2 99 36.4


User provided reference genes

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