Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 2.0e-79 298.9 138 100.0
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 2.6e-50 202.2 131 67.2
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 3.3e-50 201.8 131 67.2
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 3.3e-50 201.8 131 67.2
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 7.4e-50 200.7 136 62.5
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.7e-49 199.5 133 64.7
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 3.7e-49 198.4 131 64.9
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 3.7e-49 198.4 132 65.2
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 4.8e-49 198.0 130 63.8
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 4.8e-49 198.0 131 65.6
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 4.8e-49 198.0 131 66.4
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 4.8e-49 198.0 131 64.9
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 4.8e-49 198.0 129 65.1
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 6.3e-49 197.6 131 65.6
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 8.2e-49 197.2 130 66.9
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 8.2e-49 197.2 131 64.9
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 8.2e-49 197.2 131 63.4
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.1e-48 196.8 131 64.9
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 1.1e-48 196.8 131 63.4
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.1e-48 196.8 131 67.2
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 2.4e-48 195.7 131 64.1
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 2.4e-48 195.7 131 67.2
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 2.4e-48 195.7 131 64.1
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 3.1e-48 195.3 131 64.9
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 3.1e-48 195.3 131 63.4
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 4.1e-48 194.9 131 65.6
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 5.3e-48 194.5 129 65.9
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 5.3e-48 194.5 131 64.1
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 7.0e-48 194.1 131 63.4
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 7.0e-48 194.1 131 62.6
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 7.0e-48 194.1 131 64.1
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 7.0e-48 194.1 131 61.8
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 9.1e-48 193.7 131 63.4
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 9.1e-48 193.7 131 64.9
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 1.2e-47 193.4 132 64.4
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.2e-47 193.4 131 63.4
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 1.6e-47 193.0 129 63.6
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 1.6e-47 193.0 131 63.4
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.6e-47 193.0 130 65.4
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 1.6e-47 193.0 131 62.6
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 2.0e-47 192.6 136 63.2
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.6e-47 192.2 131 64.1
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 2.6e-47 192.2 124 67.7
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 2.6e-47 192.2 131 64.1
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 2.6e-47 192.2 131 62.6
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 3.5e-47 191.8 131 61.8
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 3.5e-47 191.8 131 61.8
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.5e-47 191.8 131 61.8
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 3.5e-47 191.8 131 65.6
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 4.5e-47 191.4 131 60.3
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 4.5e-47 191.4 132 63.6
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 5.9e-47 191.0 131 64.1
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 5.9e-47 191.0 131 61.1
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 5.9e-47 191.0 129 64.3
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 7.7e-47 190.7 132 61.4
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 7.7e-47 190.7 133 61.7
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 7.7e-47 190.7 131 61.8
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 1.3e-46 189.9 131 62.6
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 1.3e-46 189.9 131 63.4
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 1.3e-46 189.9 131 63.4
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 1.7e-46 189.5 130 64.6
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.7e-46 189.5 131 61.8
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 1.7e-46 189.5 129 63.6
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 1.7e-46 189.5 131 61.1
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 3.8e-46 188.3 129 61.2
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 3.8e-46 188.3 131 61.8
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 5.0e-46 188.0 133 58.6
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 5.0e-46 188.0 133 60.9
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 5.0e-46 188.0 133 60.2
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 5.0e-46 188.0 132 61.4
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 5.0e-46 188.0 132 64.4
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 6.5e-46 187.6 132 59.1
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 6.5e-46 187.6 132 59.1
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 6.5e-46 187.6 123 65.9
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 6.5e-46 187.6 131 60.3
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 6.5e-46 187.6 133 62.4
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 8.5e-46 187.2 129 62.0
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 8.5e-46 187.2 129 62.8
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 8.5e-46 187.2 129 62.8
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 1.1e-45 186.8 130 63.8
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 1.1e-45 186.8 132 60.6
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 1.1e-45 186.8 131 64.1
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 1.5e-45 186.4 131 61.8
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 1.9e-45 186.0 133 61.7
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 2.5e-45 185.7 131 61.8
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 2.5e-45 185.7 130 60.0
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.5e-45 185.7 131 60.3
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.2e-45 185.3 130 63.8
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.2e-45 185.3 130 63.8
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 4.2e-45 184.9 130 58.5
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 5.5e-45 184.5 133 57.9
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 9.4e-45 183.7 132 58.3
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 9.4e-45 183.7 135 60.0
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.2e-44 183.3 133 57.9
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 1.6e-44 183.0 132 58.3
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.6e-44 183.0 131 59.5
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.1e-44 182.6 131 58.8
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.1e-44 182.6 131 59.5
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 3.6e-44 181.8 132 57.6
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 3.6e-44 181.8 132 61.4
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 4.7e-44 181.4 134 58.2
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 4.7e-44 181.4 123 61.8
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 4.7e-44 181.4 128 59.4
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 6.1e-44 181.0 133 56.4
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.1e-44 181.0 131 59.5
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 8.0e-44 180.6 131 58.8
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 8.0e-44 180.6 130 59.2
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 1.0e-43 180.3 133 56.4
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.8e-43 179.5 131 58.8
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 3.0e-43 178.7 133 57.1
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 4.0e-43 178.3 132 56.8
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 5.2e-43 177.9 131 57.3
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 6.8e-43 177.6 131 59.5
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 8.8e-43 177.2 118 63.6
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 1.2e-42 176.8 128 60.2
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 1.2e-42 176.8 131 60.3
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 1.5e-42 176.4 170 50.6
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 2.0e-42 176.0 135 56.3
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 9.8e-42 173.7 129 60.5
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 6.3e-41 171.0 118 61.9
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.4e-40 169.1 126 55.6
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.4e-40 169.1 118 61.9
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 7.0e-40 167.5 128 56.2
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.2e-39 166.8 120 61.7
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 1.6e-39 166.4 124 57.3
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 3.5e-39 165.2 129 56.6
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 4.5e-39 164.9 122 58.2
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 2.2e-38 162.5 104 63.5
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 3.8e-38 161.8 117 58.1
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 6.5e-38 161.0 118 56.8
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 8.5e-38 160.6 124 57.3
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 1.1e-37 160.2 103 63.1
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.2e-34 150.2 131 50.4
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.7e-33 146.4 131 52.7
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 2.8e-33 145.6 122 53.3
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.7e-31 139.0 127 49.6
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 5.9e-31 137.9 143 42.0
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.3e-30 136.0 126 48.4
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 6.6e-30 134.4 97 61.9
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 2.8e-28 129.0 132 50.8
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 1.2e-26 123.6 96 60.4
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 8.3e-25 117.5 85 58.8
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 8.3e-25 117.5 96 57.3
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 2.4e-24 115.9 75 68.0
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.5e-21 106.7 69 65.2
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 4.4e-18 95.1 74 59.5
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.4e-16 88.2 63 60.3
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.0e-16 87.8 104 42.3
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.0e-14 81.6 78 46.2
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 5.0e-14 81.6 80 46.2


User provided reference genes

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