Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 0.0e+00 2070.0 1086 100.0
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 0.0e+00 1412.1 1113 68.6
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 0.0e+00 1228.0 1111 61.1
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 0.0e+00 1208.7 1096 60.2
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1190.6 1083 60.4
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 1.1e-308 1063.5 1080 54.7
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 1.4e-308 1063.1 1079 54.7
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 2.4e-308 1062.4 1081 54.2
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 2.0e-307 1059.3 1089 54.1
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 4.9e-306 1054.7 1081 53.7
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 5.4e-305 1051.2 1085 53.7
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 1.1e-300 1036.9 1080 53.0
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 2.0e-299 1032.7 1085 53.3
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 3.4e-299 1031.9 1078 52.8
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 4.5e-299 1031.6 1083 52.4
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 4.5e-299 1031.6 1086 52.6
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 1.3e-298 1030.0 1086 53.0
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 3.8e-298 1028.5 1081 53.1
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 8.4e-298 1027.3 1076 53.0
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 9.3e-297 1023.8 1086 52.9
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.2e-296 1023.5 1085 53.3
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 2.7e-296 1022.3 1088 52.4
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 4.6e-296 1021.5 1086 52.3
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 6.0e-296 1021.1 1078 52.1
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 7.9e-296 1020.8 1088 52.0
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 1.3e-295 1020.0 1081 52.4
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 5.1e-295 1018.1 1085 51.8
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 2.5e-294 1015.8 1081 52.6
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 9.6e-294 1013.8 1084 51.8
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 1.3e-293 1013.4 1081 52.3
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 1.6e-293 1013.1 1080 52.5
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 2.1e-293 1012.7 1079 53.0
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 6.2e-293 1011.1 1084 54.2
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 6.2e-293 1011.1 1082 52.3
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 1.1e-292 1010.4 1086 52.3
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 1.8e-292 1009.6 1081 52.5
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 1.8e-292 1009.6 1077 52.4
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 4.0e-292 1008.4 1081 52.1
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 5.3e-292 1008.1 1076 51.3
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 6.9e-292 1007.7 1077 51.4
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 1.5e-291 1006.5 1079 51.7
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 1.7e-290 1003.0 1079 52.1
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 1.4e-289 1000.0 1077 51.9
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 1.9e-289 999.6 1086 51.7
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 7.1e-289 997.7 1085 51.3
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.2e-288 996.9 1085 51.5
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 1.2e-288 996.9 1076 50.6
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 4.6e-288 995.0 1085 50.9
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 4.6e-288 995.0 1106 51.2
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 1.0e-287 993.8 1082 51.4
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 3.0e-287 992.3 1051 53.2
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 6.7e-287 991.1 1083 51.7
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 3.3e-286 988.8 1084 51.5
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 2.8e-285 985.7 1084 51.3
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.4e-284 983.4 1084 51.3
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 4.1e-284 981.9 1163 48.8
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 2.9e-282 975.7 1078 51.1
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 4.2e-281 971.8 1080 50.9
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 4.2e-281 971.8 1003 54.6
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 2.7e-280 969.1 1084 49.9
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 6.1e-280 968.0 1081 50.5
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 1.1e-278 963.8 1078 50.0
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 1.5e-278 963.4 1047 52.5
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 2.5e-278 962.6 1084 49.6
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 3.3e-278 962.2 1081 50.7
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 2.4e-276 956.1 1084 49.5
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 2.0e-275 953.0 1095 49.6
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 2.6e-275 952.6 1096 49.0
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 4.5e-275 951.8 1084 49.8
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 7.7e-275 951.0 1077 49.5
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 1.0e-274 950.7 1096 48.9
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 2.2e-274 949.5 1082 49.3
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 5.0e-274 948.3 1100 49.0
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 1.9e-273 946.4 1084 48.8
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 2.5e-273 946.0 1113 48.6
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 2.3e-271 939.5 1100 48.1
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 3.0e-271 939.1 1081 49.2
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 4.4e-270 935.3 1009 51.7
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 7.4e-270 934.5 804 65.5
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 6.3e-269 931.4 1090 49.2
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 1.8e-268 929.9 1086 48.4
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 5.3e-268 928.3 1086 48.6
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 2.0e-267 926.4 1081 48.5
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 2.6e-267 926.0 1083 50.2
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 3.4e-267 925.6 1100 47.7
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 1.7e-266 923.3 1100 47.9
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 1.4e-265 920.2 1119 47.6
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.2e-264 917.1 1038 51.7
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 1.6e-264 916.8 1118 47.0
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 2.3e-263 912.9 1098 48.2
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 9.7e-262 907.5 1073 48.6
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 2.8e-261 906.0 1093 48.7
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 1.8e-260 903.3 1081 47.7
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 1.8e-260 903.3 1100 47.4
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 5.9e-259 898.3 1116 47.9
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 1.9e-257 893.3 1088 47.2
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 5.7e-254 881.7 1076 48.0
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 1.3e-253 880.6 954 52.5
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 6.3e-253 878.2 1108 46.8
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 1.4e-252 877.1 1168 44.9
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 1.7e-245 853.6 1069 48.0
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 4.8e-245 852.0 1085 46.2
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 2.4e-244 849.7 1121 45.6
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 7.0e-244 848.2 1142 46.0
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 1.3e-242 844.0 921 52.8
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 6.5e-242 841.6 1177 44.5
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 1.2e-240 837.4 1086 45.3
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 9.2e-236 821.2 894 52.8
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.9e-233 813.5 1087 45.3
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 1.3e-226 790.8 1272 41.1
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 1.1e-225 787.7 1244 40.4
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 4.1e-220 769.2 1091 43.3
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 7.0e-220 768.5 1084 44.0
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 3.5e-211 739.6 753 54.6
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.4e-199 701.0 932 45.6
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.3e-178 631.3 644 53.7
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 4.3e-177 626.3 988 42.1
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 1.3e-176 624.8 728 50.7
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 2.1e-155 554.3 831 40.9
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 9.1e-143 512.3 788 41.9
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.4e-138 498.4 556 53.1
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 7.5e-137 492.7 555 50.6
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 1.7e-136 491.5 527 50.1
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 1.5e-129 468.4 577 49.4
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 3.5e-126 457.2 556 49.8
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 1.4e-122 445.3 719 39.5
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 2.7e-110 404.4 436 49.8
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 7.8e-110 402.9 532 44.4
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 1.3e-104 385.6 388 55.2
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.1e-103 382.5 835 35.3
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 5.4e-95 353.6 397 52.1
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 6.0e-94 350.1 364 53.3
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 9.0e-82 309.7 356 45.5
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 6.9e-74 283.5 355 44.5
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 7.1e-71 273.5 369 42.5
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 6.7e-69 266.9 326 46.0
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 1.5e-68 265.8 280 47.1
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 5.6e-68 263.8 284 51.8
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 1.6e-62 245.7 348 45.7
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.0e-61 243.0 349 46.4
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 2.3e-53 215.3 204 49.0
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 8.2e-51 206.8 167 61.1
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 4.5e-49 201.1 193 56.5
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 4.3e-44 184.5 129 72.9
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 2.4e-42 178.7 138 63.0
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 7.7e-41 173.7 158 53.8
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 4.2e-39 167.9 129 64.3
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 8.8e-37 160.2 125 64.0
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 5.5e-31 141.0 125 56.0
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 2.7e-30 138.7 204 33.8
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-21 109.4 92 60.9
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 2.3e-21 109.0 101 49.5
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 3.0e-21 108.6 144 41.0
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 5.4e-18 97.8 86 57.0
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 2.0e-17 95.9 110 50.9
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 1.7e-16 92.8 71 59.2
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 2.9e-16 92.0 155 38.7
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.1e-15 90.1 76 53.9
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-15 89.4 78 53.8
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 7.2e-15 87.4 71 54.9
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 6.1e-14 84.3 86 50.0
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 1.4e-13 83.2 106 43.4
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 1.2e-12 80.1 98 45.9
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 9.8e-12 77.0 89 48.3
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 3.1e-10 72.0 161 31.7
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 1.2e-09 70.1 77 48.1
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 1.2e-09 70.1 77 48.1
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 2.9e-08 65.5 81 39.5
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 1.1e-07 63.5 91 39.6
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 4.7e-06 58.2 52 50.0


User provided reference genes

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