Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 6.8e-204 713.8 357 100.0
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 7.0e-108 394.8 273 70.0
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 6.5e-90 335.1 271 59.0
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 7.2e-89 331.6 269 60.2
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 1.6e-88 330.5 315 55.6
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 3.0e-87 326.2 267 59.2
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 4.0e-87 325.9 266 58.3
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 5.2e-87 325.5 290 56.2
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 6.8e-87 325.1 266 58.3
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 8.8e-87 324.7 239 64.4
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 8.8e-87 324.7 280 58.9
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 1.5e-86 323.9 266 60.5
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 1.5e-86 323.9 288 55.6
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 2.0e-86 323.6 289 53.6
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 3.4e-86 322.8 242 63.2
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 3.4e-86 322.8 242 63.2
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 4.4e-86 322.4 265 60.0
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 7.5e-86 321.6 267 57.7
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 1.7e-85 320.5 280 57.5
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 2.8e-85 319.7 235 65.1
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 1.8e-84 317.0 235 64.3
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 3.1e-84 316.2 244 60.2
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 4.1e-84 315.8 316 49.7
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 5.4e-84 315.5 267 59.2
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 1.6e-83 313.9 297 54.2
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 1.6e-83 313.9 307 51.1
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 2.7e-83 313.2 235 61.3
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 2.7e-83 313.2 225 66.7
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 3.5e-83 312.8 270 57.0
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 5.9e-83 312.0 263 56.3
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 5.9e-83 312.0 267 58.8
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.0e-82 311.2 279 54.8
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 2.3e-82 310.1 278 55.0
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 2.3e-82 310.1 266 57.9
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 6.6e-82 308.5 288 52.4
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 6.6e-82 308.5 336 50.3
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 6.6e-82 308.5 231 61.9
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 8.6e-82 308.1 266 56.8
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 1.5e-81 307.4 274 54.7
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 1.5e-81 307.4 262 59.5
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.5e-81 307.4 291 52.2
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 1.5e-81 307.4 238 61.3
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 1.9e-81 307.0 231 63.2
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 3.3e-81 306.2 267 55.1
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 4.3e-81 305.8 269 55.8
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 4.3e-81 305.8 291 52.2
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 5.6e-81 305.4 274 54.0
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 5.6e-81 305.4 234 62.4
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 5.6e-81 305.4 345 47.5
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 7.3e-81 305.1 295 51.5
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 9.5e-81 304.7 243 59.7
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 1.6e-80 303.9 235 60.0
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 2.8e-80 303.1 237 58.6
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 2.8e-80 303.1 292 55.5
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 4.7e-80 302.4 265 54.3
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 4.7e-80 302.4 231 62.8
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 8.0e-80 301.6 238 60.1
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 1.0e-79 301.2 233 60.5
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 1.4e-79 300.8 267 55.1
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 1.4e-79 300.8 265 54.3
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 2.3e-79 300.1 263 55.9
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 2.3e-79 300.1 281 51.6
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 3.0e-79 299.7 238 59.2
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 4.0e-79 299.3 262 55.7
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 4.0e-79 299.3 235 59.1
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 6.8e-79 298.5 236 58.1
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 8.9e-79 298.1 235 59.6
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 8.9e-79 298.1 237 61.2
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 1.2e-78 297.7 210 63.8
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.5e-78 297.4 235 59.1
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 1.5e-78 297.4 231 60.2
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 4.4e-78 295.8 237 57.4
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 4.4e-78 295.8 237 57.8
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 4.4e-78 295.8 264 53.4
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 5.7e-78 295.4 281 50.9
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 5.7e-78 295.4 274 54.7
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 5.7e-78 295.4 231 59.7
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 5.7e-78 295.4 263 55.1
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 5.7e-78 295.4 235 57.4
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 7.5e-78 295.0 235 59.6
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 7.5e-78 295.0 210 64.3
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 9.8e-78 294.7 234 57.7
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 1.3e-77 294.3 231 61.0
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 2.2e-77 293.5 263 53.2
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 4.9e-77 292.4 234 58.1
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 6.4e-77 292.0 231 59.7
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 8.3e-77 291.6 259 54.1
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 8.3e-77 291.6 231 61.0
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 2.4e-76 290.0 268 51.9
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 2.4e-76 290.0 275 50.5
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 2.4e-76 290.0 239 56.5
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 4.1e-76 289.3 232 57.3
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 5.4e-76 288.9 214 62.1
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 7.0e-76 288.5 238 57.1
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 1.2e-75 287.7 274 50.4
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 1.6e-75 287.3 234 56.8
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 2.7e-75 286.6 270 50.4
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 2.7e-75 286.6 274 50.0
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 2.7e-75 286.6 270 50.4
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 4.6e-75 285.8 252 53.2
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 1.3e-74 284.3 268 51.5
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 1.5e-73 280.8 263 51.0
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 1.6e-72 277.3 234 58.5
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 2.8e-72 276.6 197 64.0
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 6.2e-72 275.4 340 43.8
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 2.3e-71 273.5 236 57.2
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 1.2e-70 271.2 256 50.4
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 6.4e-69 265.4 310 43.5
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 5.4e-68 262.3 310 43.5
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 4.6e-67 259.2 301 43.2
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 1.7e-66 257.3 215 57.2
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 5.0e-66 255.8 325 42.5
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 4.7e-64 249.2 187 62.0
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 1.8e-63 247.3 183 61.7
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 2.9e-61 240.0 206 56.3
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 3.7e-61 239.6 232 56.0
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 4.9e-53 212.6 231 51.9
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 5.1e-42 176.0 122 63.9
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 4.5e-38 162.9 123 58.5
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 4.3e-33 146.4 239 38.1
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 3.7e-32 143.3 112 59.8
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 1.7e-21 107.8 154 40.3
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.5e-20 104.0 83 54.2
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 2.3e-18 97.4 225 29.8
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 6.7e-18 95.9 269 29.4
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 1.9e-17 94.4 233 31.8
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 2.5e-17 94.0 233 31.3
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 7.4e-17 92.4 296 26.4
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 1.3e-16 91.7 244 28.3
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 2.8e-16 90.5 170 34.1
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 2.8e-16 90.5 205 29.3
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 2.8e-16 90.5 246 26.8
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 2.8e-16 90.5 190 28.4
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 3.7e-16 90.1 246 25.6
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 6.3e-16 89.4 216 28.2
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 6.3e-16 89.4 227 30.0
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 8.2e-16 89.0 207 31.4
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 1.1e-15 88.6 193 32.1
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.4e-15 88.2 226 30.5
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 1.8e-15 87.8 244 27.9
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 1.8e-15 87.8 211 30.3
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 1.8e-15 87.8 172 32.0
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 2.4e-15 87.4 181 29.8
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 3.1e-15 87.0 61 59.0
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 3.1e-15 87.0 61 59.0
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 5.3e-15 86.3 203 31.5
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 6.9e-15 85.9 197 30.5
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 6.9e-15 85.9 197 30.5
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 6.9e-15 85.9 216 28.2
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 9.0e-15 85.5 197 30.5
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 1.2e-14 85.1 199 32.2
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 1.2e-14 85.1 243 28.0
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 1.5e-14 84.7 235 26.8
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 1.5e-14 84.7 76 52.6
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 1.5e-14 84.7 189 28.6
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 2.0e-14 84.3 157 32.5
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 3.4e-14 83.6 187 27.8
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 4.5e-14 83.2 200 27.5
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 4.5e-14 83.2 226 27.0
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 5.9e-14 82.8 182 29.7
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 1.0e-13 82.0 204 30.9
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 1.0e-13 82.0 242 29.3
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 1.7e-13 81.3 213 30.0
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 1.7e-13 81.3 172 31.4
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.9e-13 80.5 262 24.4
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 3.8e-13 80.1 66 54.5
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 3.8e-13 80.1 227 26.9
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 5.0e-13 79.7 238 26.9
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 8.5e-13 79.0 141 33.3
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.1e-12 78.6 216 28.2
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 3.6e-11 73.6 78 47.4
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 1.0e-10 72.0 148 28.4
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.3e-10 71.6 262 24.4
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 8.8e-10 68.9 63 47.6
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 2.5e-09 67.4 122 31.1
Pp3c1_15860 Physcomitrium patens HOM05D006248 ORTHO05D312268 4.3e-09 66.6 34 82.4
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 5.7e-09 66.2 152 30.9
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 9.7e-09 65.5 116 33.6
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 2.2e-08 64.3 107 32.7
Phvul.L001633 Phaseolus vulgaris HOM05D008272 ORTHO05D010429 1.1e-07 62.0 115 33.0
TAR628G0330 Trochodendron aralioides HOM05D003844 ORTHO05D004534 4.1e-07 60.1 133 32.3
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 2.6e-06 57.4 129 29.5


User provided reference genes

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