Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0167s0016 Marchantia polymorpha HOM05D000533 ORTHO05D002807 1.7e-55 219.2 113 100.0
Nitab4.5_0006502g0040 Nicotiana tabacum HOM05D000533 ORTHO05D002807 2.2e-31 139.0 137 57.7
Solyc00g500041.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 2.8e-31 138.7 140 56.4
Solyc00g500086.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 2.8e-31 138.7 140 56.4
Solyc00g500123.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 2.8e-31 138.7 140 56.4
Solyc00g500193.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 2.8e-31 138.7 140 56.4
SEGI_20811 Sequoiadendron giganteum HOM05D000533 ORTHO05D002807 4.9e-31 137.9 140 55.7
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 8.3e-31 137.1 123 61.8
CAN.G1470.9 Capsicum annuum HOM05D000533 ORTHO05D002807 1.4e-30 136.3 140 55.7
CAN.G1526.1 Capsicum annuum HOM05D000533 ORTHO05D002807 1.4e-30 136.3 140 55.7
CAN.G1045.10 Capsicum annuum HOM05D000533 ORTHO05D002807 4.1e-30 134.8 140 55.0
Sed0004290 Sechium edule HOM05D000533 ORTHO05D002807 7.0e-30 134.0 139 55.4
Sed0023589 Sechium edule HOM05D000533 ORTHO05D002807 7.0e-30 134.0 139 55.4
Sed0023659 Sechium edule HOM05D000533 ORTHO05D002807 7.0e-30 134.0 139 55.4
CAN.G965.4 Capsicum annuum HOM05D000533 ORTHO05D002807 9.2e-30 133.7 140 54.3
DCAR_032541 Daucus carota HOM05D000533 ORTHO05D002807 9.2e-30 133.7 139 54.7
Hma1.2p1_0660F.1_g197440 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 9.2e-30 133.7 139 55.4
Hma1.2p1_2753F.1_g327925 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 9.2e-30 133.7 139 55.4
RcHm_v2.0_Chr3g0470801 Rosa chinensis HOM05D000533 ORTHO05D002807 9.2e-30 133.7 145 53.1
EL10Ac6g14288 Beta vulgaris HOM05D000533 ORTHO05D002807 1.2e-29 133.3 139 55.4
EL10As15g24097 Beta vulgaris HOM05D000533 ORTHO05D002807 1.2e-29 133.3 139 55.4
HanXRQChr00c0336g0573691 Helianthus annuus HOM05D000533 ORTHO05D002807 1.2e-29 133.3 139 54.7
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-29 133.3 139 54.7
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-29 133.3 139 54.7
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-29 133.3 139 54.7
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-29 133.3 139 54.7
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-29 133.3 139 54.7
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-29 133.3 139 54.7
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-29 133.3 139 54.7
PSO548G0012 Papaver somniferum HOM05D000533 ORTHO05D002807 1.2e-29 133.3 139 54.0
MELO3C027055.2 Cucumis melo HOM05D000533 ORTHO05D002807 1.6e-29 132.9 139 55.4
FAN01G2990 Fragaria x ananassa HOM05D000533 ORTHO05D002807 1.6e-29 132.9 139 55.4
PGR111G0022 Punica granatum HOM05D000533 ORTHO05D002807 2.0e-29 132.5 139 54.7
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 2.0e-29 132.5 139 54.0
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 2.0e-29 132.5 139 54.0
CAN.G1298.18 Capsicum annuum HOM05D000533 ORTHO05D002807 2.7e-29 132.1 150 52.7
Lj2C1238G35 Lonicera japonica HOM05D000533 ORTHO05D001069 2.7e-29 132.1 139 54.7
Lju5009P0T26 Lonicera japonica HOM05D000533 ORTHO05D002807 2.7e-29 132.1 139 54.7
Nn064s42206 Nelumbo nucifera HOM05D000533 ORTHO05D002807 2.7e-29 132.1 137 55.5
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 3.5e-29 131.7 139 55.4
SalBow1G0006 Salvia bowleyana HOM05D000533 ORTHO05D002807 3.5e-29 131.7 139 53.2
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 5.9e-29 131.0 139 54.7
AL9U11959 Arabidopsis lyrata HOM05D000533 ORTHO05D002807 2.9e-28 128.6 139 53.2
ATCG01100 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 2.9e-28 128.6 139 53.2
arahy.Tifrunner.gnm1.ann1.1262SD Arachis hypogaea HOM05D000533 ORTHO05D002807 2.9e-28 128.6 139 54.0
arahy.Tifrunner.gnm1.ann1.510BCU Arachis hypogaea HOM05D000533 ORTHO05D002807 2.9e-28 128.6 139 54.0
CARHR282470 Cardamine hirsuta HOM05D000533 ORTHO05D002807 2.9e-28 128.6 139 53.2
Ah.10g027030 Amaranthus hybridus HOM05D000533 ORTHO05D002807 3.8e-28 128.3 139 54.0
Migut.D01248 Erythranthe guttata HOM05D000533 ORTHO05D001069 5.0e-28 127.9 139 51.8
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 6.6e-28 127.5 139 54.0
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 6.6e-28 127.5 139 54.0
C05p53830 Brassica napus HOM05D000533 ORTHO05D002807 8.6e-28 127.1 139 51.8
C09p40310 Brassica napus HOM05D000533 ORTHO05D002807 8.6e-28 127.1 139 51.8
BolSC35t60689H Brassica oleracea HOM05D000533 ORTHO05D002807 8.6e-28 127.1 139 51.8
BolSC44t60825H Brassica oleracea HOM05D000533 ORTHO05D002807 8.6e-28 127.1 139 51.8
BolSC46t60955H Brassica oleracea HOM05D000533 ORTHO05D002807 8.6e-28 127.1 139 51.8
BolSC47t61062H Brassica oleracea HOM05D000533 ORTHO05D002807 8.6e-28 127.1 139 51.8
BraSC103t45432Z Brassica rapa HOM05D000533 ORTHO05D002807 8.6e-28 127.1 139 51.8
BraSC143t45657Z Brassica rapa HOM05D000533 ORTHO05D002807 8.6e-28 127.1 139 51.8
LjContig00318g0007609 Lotus japonicus HOM05D000533 ORTHO05D002807 8.6e-28 127.1 139 53.2
LjContig00319g0005103 Lotus japonicus HOM05D000533 ORTHO05D002807 8.6e-28 127.1 139 53.2
Gorai.009G395200 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.5e-27 126.3 139 52.5
Medtr0002s0150 Medicago truncatula HOM05D000533 ORTHO05D001069 1.5e-27 126.3 139 53.2
Psat0s1160g0400 Pisum sativum HOM05D000533 ORTHO05D002807 1.5e-27 126.3 139 52.5
Psat0s6989g0240 Pisum sativum HOM05D000533 ORTHO05D001069 1.5e-27 126.3 139 52.5
Psat1g050080 Pisum sativum HOM05D000533 ORTHO05D001069 1.5e-27 126.3 139 52.5
Psat3g095040 Pisum sativum HOM05D000533 ORTHO05D001069 1.5e-27 126.3 139 52.5
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 1.5e-27 126.3 139 52.5
arahy.Tifrunner.gnm1.ann1.840LER Arachis hypogaea HOM05D000533 ORTHO05D002807 1.9e-27 125.9 139 53.2
CAN.G30.8 Capsicum annuum HOM05D000533 ORTHO05D002807 1.9e-27 125.9 140 52.1
AUR62015545 Chenopodium quinoa HOM05D000533 ORTHO05D001069 1.9e-27 125.9 133 54.9
ATR0043G018 Amborella trichopoda HOM05D000533 ORTHO05D001069 3.3e-27 125.2 139 52.5
CAN.G127.11 Capsicum annuum HOM05D000533 ORTHO05D002807 3.3e-27 125.2 140 50.0
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 3.3e-27 125.2 134 53.0
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 3.3e-27 125.2 139 53.2
Psat4g172360 Pisum sativum HOM05D000533 ORTHO05D002807 5.6e-27 124.4 139 51.8
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 5.6e-27 124.4 134 53.7
ATR0924G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 7.3e-27 124.0 134 54.5
Gohir.A06G090050 Gossypium hirsutum HOM05D000533 ORTHO05D002807 7.3e-27 124.0 139 51.8
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 7.3e-27 124.0 146 50.0
Gohir.D08G207450 Gossypium hirsutum HOM05D000533 ORTHO05D001069 9.5e-27 123.6 135 52.6
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 9.5e-27 123.6 134 53.0
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 1.2e-26 123.2 139 52.5
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 1.2e-26 123.2 139 52.5
BolC9t56913H Brassica oleracea HOM05D000533 ORTHO05D002807 1.6e-26 122.9 139 50.4
GSVIVG01012613001 Vitis vinifera HOM05D000533 ORTHO05D001069 1.6e-26 122.9 139 51.8
Oeu012820.1 Olea europaea HOM05D000533 ORTHO05D002807 2.8e-26 122.1 146 47.9
Lsat_1_v5_gn_5_65981 Lactuca sativa HOM05D000533 ORTHO05D001069 6.8e-25 117.5 125 54.4
Gohir.A01G139542 Gossypium hirsutum HOM05D000533 ORTHO05D002807 7.5e-24 114.0 120 55.8
Gohir.A04G053078 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.3e-23 113.2 134 51.5
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 1.1e-22 110.2 126 50.8
Potri.013G074800 Populus trichocarpa HOM05D000533 ORTHO05D002807 1.1e-22 110.2 145 48.3
Gorai.005G106600 Gossypium raimondii HOM05D000533 ORTHO05D002807 3.2e-22 108.6 120 54.2
Gohir.D04G093016 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.7e-21 105.5 129 48.8
Gorai.003G091000 Gossypium raimondii HOM05D000533 ORTHO05D002807 7.8e-21 104.0 133 46.6
Medtr3g113820 Medicago truncatula HOM05D000533 ORTHO05D002807 1.0e-20 103.6 120 50.8
Psat0s1160g0320 Pisum sativum HOM05D000533 ORTHO05D001069 1.0e-20 103.6 198 37.9
BraSC59t46529Z Brassica rapa HOM05D000533 ORTHO05D002807 6.6e-20 100.9 155 43.2
Gohir.D06G147033 Gossypium hirsutum HOM05D000533 ORTHO05D002807 6.6e-20 100.9 126 48.4
Hund28342 Selenicereus undatus HOM05D000533 ORTHO05D002807 1.1e-19 100.1 99 57.6
Hund29093 Selenicereus undatus HOM05D000533 ORTHO05D002807 1.1e-19 100.1 99 57.6
Hund30926 Selenicereus undatus HOM05D000533 ORTHO05D002807 1.1e-19 100.1 99 57.6
Psat6g182640 Pisum sativum HOM05D000533 ORTHO05D002807 1.5e-19 99.8 118 50.8
Sed0007463 Sechium edule HOM05D000533 ORTHO05D002807 1.5e-19 99.8 127 49.6
SMO086G0018 Selaginella moellendorffii HOM05D000533 ORTHO05D002807 2.5e-19 99.0 135 46.7
HanXRQChr17g0557741 Helianthus annuus HOM05D000533 ORTHO05D002807 7.3e-19 97.4 99 56.6
MELO3C031836.2 Cucumis melo HOM05D000533 ORTHO05D002807 1.6e-18 96.3 136 44.9
Gohir.D02G093940 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.8e-18 95.5 131 47.3
Lsat_1_v5_gn_1_58461 Lactuca sativa HOM05D000533 ORTHO05D002807 1.8e-17 92.8 99 54.5
Psat0s411g0120 Pisum sativum HOM05D000533 ORTHO05D002807 1.5e-16 89.7 126 41.3
Sopen02g002710 Solanum pennellii HOM05D000533 ORTHO05D002807 2.6e-16 89.0 121 45.5
SGA_v2.0_scaffold150G36657 Striga asiatica HOM05D000533 ORTHO05D002807 3.4e-16 88.6 120 44.2
HanXRQChr01g0000271 Helianthus annuus HOM05D000533 ORTHO05D001069 4.4e-16 88.2 113 47.8
Nitab4.5_0000660g0060 Nicotiana tabacum HOM05D000533 ORTHO05D002807 1.3e-15 86.7 122 45.1
Nitab4.5_0007400g0060 Nicotiana tabacum HOM05D000533 ORTHO05D002807 1.4e-14 83.2 52 80.8
Nn7g37744 Nelumbo nucifera HOM05D000533 ORTHO05D002807 3.2e-14 82.0 107 46.7
BolSC45t60906H Brassica oleracea HOM05D000533 ORTHO05D002807 9.2e-14 80.5 120 40.8
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 1.6e-13 79.7 124 41.9
FAN09G0092 Fragaria x ananassa HOM05D000107 ORTHO05D002484 1.6e-13 79.7 47 87.2
EL10As15g24139 Beta vulgaris HOM05D000533 ORTHO05D002807 3.5e-13 78.6 86 51.2
HanXRQChr01g0020051 Helianthus annuus HOM05D000533 ORTHO05D002807 6.0e-13 77.8 50 72.0
PGSC0003DMG402008783 Solanum tuberosum HOM05D000533 ORTHO05D002807 7.8e-13 77.4 53 69.8
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 1.7e-12 76.3 48 72.9
BolC2t10600H Brassica oleracea HOM05D000533 ORTHO05D002807 1.1e-11 73.6 50 68.0
BraSC25t45913Z Brassica rapa HOM05D000533 ORTHO05D002807 1.1e-11 73.6 50 68.0
C02p28820 Brassica napus HOM05D000533 ORTHO05D002807 1.5e-11 73.2 50 66.0
BolC2t08927H Brassica oleracea HOM05D000533 ORTHO05D002807 1.5e-11 73.2 50 66.0
Nitab4.5_0002752g0100 Nicotiana tabacum HOM05D000533 ORTHO05D002807 1.9e-11 72.8 42 78.6
Solyc11g021233.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 5.6e-11 71.2 127 43.3
Lj2C1229T2 Lonicera japonica HOM05D000533 ORTHO05D002807 7.3e-11 70.9 45 73.3
Psat1g104960 Pisum sativum HOM05D000533 ORTHO05D002807 1.6e-10 69.7 77 46.8
arahy.Tifrunner.gnm1.ann1.V68ACY Arachis hypogaea HOM05D000533 ORTHO05D001069 2.1e-10 69.3 42 76.2
Migut.D01386 Erythranthe guttata HOM05D000533 ORTHO05D002807 2.1e-10 69.3 96 42.7
Solyc02g011800.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 2.1e-10 69.3 101 43.6
Oeu029191.1 Olea europaea HOM05D000533 ORTHO05D002807 6.2e-10 67.8 51 64.7
Sed0023687 Sechium edule HOM05D000533 ORTHO05D002807 8.1e-10 67.4 45 71.1
ATR0535G001 Amborella trichopoda HOM05D000533 ORTHO05D002807 2.3e-09 65.9 47 63.8
CAN.G262.8 Capsicum annuum HOM05D000533 ORTHO05D002807 2.3e-09 65.9 53 60.4
Lsat_1_v5_gn_8_103040 Lactuca sativa HOM05D000533 ORTHO05D002807 2.3e-09 65.9 50 60.0
Psat0s1586g0320 Pisum sativum HOM05D000533 ORTHO05D002807 4.0e-09 65.1 53 52.8
HanXRQChr00c0703g0576921 Helianthus annuus HOM05D000533 ORTHO05D002807 8.9e-09 63.9 40 72.5
COL.COLO4_02137 Corchorus olitorius HOM05D000533 ORTHO05D002807 1.2e-08 63.5 136 27.9
Pp3c11_850 Physcomitrium patens HOM05D000533 ORTHO05D002807 1.5e-08 63.2 123 32.5
BolSC35t60707H Brassica oleracea HOM05D000533 ORTHO05D002807 4.4e-08 61.6 123 38.2
TPR.G9467 Trifolium pratense HOM05D000533 ORTHO05D002807 1.4e-06 56.6 37 73.0
BolC7t43857H Brassica oleracea HOM05D000533 ORTHO05D002807 2.4e-06 55.8 29 86.2
BolSC29t60509H Brassica oleracea HOM05D000533 ORTHO05D002807 2.4e-06 55.8 29 86.2
BolSC37t60796H Brassica oleracea HOM05D000533 ORTHO05D002807 2.4e-06 55.8 29 86.2
BolSC49t61146H Brassica oleracea HOM05D000533 ORTHO05D002807 2.4e-06 55.8 29 86.2
BraSC58t46464Z Brassica rapa HOM05D000533 ORTHO05D002807 2.4e-06 55.8 29 86.2
Nitab4.5_0000843g0030 Nicotiana tabacum HOM05D000533 ORTHO05D002807 7.1e-06 54.3 43 62.8
Gorai.009G398900 Gossypium raimondii HOM05D000533 ORTHO05D002807 9.2e-06 53.9 79 43.0
Nn8g40522 Nelumbo nucifera HOM05D000533 ORTHO05D002807 9.2e-06 53.9 29 86.2


User provided reference genes

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