Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 7.0e-105 384.0 204 100.0
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 1.0e-31 141.0 146 51.4
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 7.4e-30 134.8 178 42.7
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 9.7e-30 134.4 204 39.2
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 9.7e-30 134.4 176 42.0
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.3e-29 134.0 175 42.3
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.7e-29 133.7 186 38.7
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 3.7e-29 132.5 186 38.7
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 4.8e-29 132.1 178 43.3
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 4.8e-29 132.1 186 39.8
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 6.3e-29 131.7 160 43.8
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 1.1e-28 131.0 178 41.6
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 1.1e-28 131.0 179 41.9
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 2.4e-28 129.8 161 43.5
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 3.1e-28 129.4 187 40.6
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 3.1e-28 129.4 176 41.5
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 4.1e-28 129.0 201 36.8
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 4.1e-28 129.0 160 43.1
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 4.1e-28 129.0 146 46.6
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 5.3e-28 128.6 181 39.8
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 5.3e-28 128.6 206 38.8
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 6.9e-28 128.3 160 43.8
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 6.9e-28 128.3 145 46.2
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 9.1e-28 127.9 176 37.5
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 1.2e-27 127.5 176 38.1
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 1.2e-27 127.5 186 40.3
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 1.2e-27 127.5 205 38.0
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 1.2e-27 127.5 186 36.6
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 1.5e-27 127.1 205 38.0
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 1.5e-27 127.1 145 44.8
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 2.6e-27 126.3 163 40.5
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 3.4e-27 125.9 178 42.7
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 4.5e-27 125.6 175 40.6
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 5.9e-27 125.2 162 40.1
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 5.9e-27 125.2 158 42.4
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 5.9e-27 125.2 192 40.1
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 7.7e-27 124.8 188 37.2
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 7.7e-27 124.8 201 38.8
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 1.0e-26 124.4 183 39.3
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 1.3e-26 124.0 163 42.3
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.3e-26 124.0 178 41.0
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.7e-26 123.6 188 39.9
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.2e-26 123.2 186 38.7
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 2.2e-26 123.2 194 40.7
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 2.2e-26 123.2 192 38.5
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 2.2e-26 123.2 175 38.9
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 2.9e-26 122.9 160 42.5
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 2.9e-26 122.9 205 37.6
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 2.9e-26 122.9 163 39.3
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 3.8e-26 122.5 164 42.1
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 3.8e-26 122.5 184 37.5
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 1.9e-25 120.2 160 39.4
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 2.5e-25 119.8 178 36.5
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 2.5e-25 119.8 179 38.0
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 3.2e-25 119.4 160 43.1
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 3.2e-25 119.4 206 34.0
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 3.2e-25 119.4 188 39.4
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 3.2e-25 119.4 207 34.3
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 9.4e-25 117.9 179 40.8
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 9.4e-25 117.9 147 44.2
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 9.4e-25 117.9 191 36.6
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.2e-24 117.5 158 41.8
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 1.2e-24 117.5 181 35.4
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 1.2e-24 117.5 178 36.0
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 1.6e-24 117.1 187 38.0
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 2.1e-24 116.7 186 37.6
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 3.6e-24 115.9 179 39.1
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 7.9e-24 114.8 147 42.9
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 7.9e-24 114.8 147 42.9
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 7.9e-24 114.8 147 42.9
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 7.9e-24 114.8 157 43.9
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 1.4e-23 114.0 147 42.9
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 2.3e-23 113.2 180 33.9
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 3.0e-23 112.8 161 39.1
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 3.0e-23 112.8 196 36.7
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 6.7e-23 111.7 179 36.3
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 8.8e-23 111.3 149 43.0
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 1.5e-22 110.5 186 37.1
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 2.0e-22 110.2 163 44.2
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 3.3e-22 109.4 147 43.5
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 3.3e-22 109.4 147 43.5
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 3.3e-22 109.4 147 43.5
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 3.3e-22 109.4 147 43.5
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 3.3e-22 109.4 147 43.5
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 5.7e-22 108.6 223 34.1
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 1.3e-21 107.5 198 36.9
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.3e-21 107.5 157 38.2
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 2.8e-21 106.3 165 39.4
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 2.8e-21 106.3 161 39.8
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 4.8e-21 105.5 176 38.1
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 4.8e-21 105.5 157 38.2
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 4.8e-21 105.5 191 35.1
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 6.3e-21 105.1 141 39.7
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 8.2e-21 104.8 165 38.8
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 8.2e-21 104.8 150 41.3
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 1.4e-20 104.0 145 38.6
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 1.8e-20 103.6 160 40.0
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 1.8e-20 103.6 176 37.5
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 2.4e-20 103.2 181 35.9
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 9.1e-20 101.3 109 52.3
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 3.5e-19 99.4 143 40.6
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 7.7e-19 98.2 142 40.8
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.0e-18 97.8 143 39.9
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 1.3e-18 97.4 110 42.7
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 6.5e-18 95.1 169 35.5
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 6.5e-18 95.1 199 32.2
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 2.5e-17 93.2 177 33.9
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 2.5e-17 93.2 113 44.2
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 9.4e-17 91.3 142 37.3
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 1.2e-16 90.9 181 32.0
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 2.1e-16 90.1 157 35.7
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 8.0e-16 88.2 145 36.6
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 5.2e-15 85.5 113 38.1
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 5.2e-15 85.5 129 38.8
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 8.8e-15 84.7 115 39.1
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 1.2e-14 84.3 96 47.9
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 2.6e-14 83.2 136 33.1
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 9.7e-14 81.3 113 38.9
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 2.8e-13 79.7 251 29.5
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 1.1e-12 77.8 116 37.9
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 3.5e-11 72.8 101 38.6
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 6.5e-10 68.6 94 38.3
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 1.1e-09 67.8 113 33.6
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 2.5e-09 66.6 117 38.5
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 1.6e-08 63.9 88 36.4
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 2.3e-07 60.1 144 31.9
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.5e-06 57.4 66 43.9


User provided reference genes

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