Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 0.0e+00 1278.1 681 100.0
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 1.2e-26 125.9 310 32.6
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 4.2e-21 107.5 214 35.0
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 2.1e-20 105.1 209 34.4
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 3.0e-19 101.3 209 33.0
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 4.0e-19 100.9 213 32.9
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 4.0e-19 100.9 202 33.2
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 4.0e-19 100.9 202 33.2
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 4.0e-19 100.9 202 33.2
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 6.8e-19 100.1 238 32.8
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 6.8e-19 100.1 230 33.9
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 8.8e-19 99.8 210 32.9
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 8.8e-19 99.8 209 33.0
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 1.2e-18 99.4 213 32.9
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 1.5e-18 99.0 205 33.2
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 2.0e-18 98.6 253 30.4
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 3.4e-18 97.8 215 33.0
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 3.4e-18 97.8 254 31.5
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 4.4e-18 97.4 203 32.5
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 4.4e-18 97.4 225 32.0
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 4.4e-18 97.4 214 29.9
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 5.7e-18 97.1 229 31.9
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 7.5e-18 96.7 214 32.7
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 7.5e-18 96.7 213 33.3
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 7.5e-18 96.7 215 31.2
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 7.5e-18 96.7 215 31.2
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 1.3e-17 95.9 217 28.6
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 1.7e-17 95.5 209 32.1
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 2.2e-17 95.1 203 32.0
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 2.8e-17 94.7 255 29.8
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 2.8e-17 94.7 214 31.3
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 2.8e-17 94.7 229 31.4
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 3.7e-17 94.4 220 29.5
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 3.7e-17 94.4 215 32.1
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 4.8e-17 94.0 213 33.3
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 6.3e-17 93.6 215 30.2
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 6.3e-17 93.6 213 30.5
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 6.3e-17 93.6 229 32.3
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.1e-16 92.8 213 31.9
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 1.1e-16 92.8 203 31.0
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 1.1e-16 92.8 213 30.0
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 1.1e-16 92.8 263 29.7
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.4e-16 92.4 213 31.5
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 1.4e-16 92.4 258 29.8
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 1.8e-16 92.0 213 29.6
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 1.8e-16 92.0 213 31.0
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 1.8e-16 92.0 173 35.3
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 2.4e-16 91.7 162 34.6
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 2.4e-16 91.7 205 29.8
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 3.1e-16 91.3 256 29.3
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 5.4e-16 90.5 217 29.0
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 5.4e-16 90.5 217 29.0
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 7.0e-16 90.1 213 30.0
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 7.0e-16 90.1 210 31.0
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 7.0e-16 90.1 250 31.2
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 7.0e-16 90.1 251 31.5
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 7.0e-16 90.1 203 32.0
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 7.0e-16 90.1 215 31.2
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 9.1e-16 89.7 227 30.8
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.2e-15 89.4 217 28.1
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 1.6e-15 89.0 197 29.4
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 1.6e-15 89.0 224 29.5
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 2.0e-15 88.6 210 30.0
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.0e-15 88.6 263 29.3
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 2.7e-15 88.2 210 30.0
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 2.7e-15 88.2 208 30.8
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 3.5e-15 87.8 247 29.6
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 3.5e-15 87.8 213 30.5
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 3.5e-15 87.8 203 31.5
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 4.5e-15 87.4 213 29.6
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 4.5e-15 87.4 202 31.7
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 5.9e-15 87.0 174 33.3
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 7.7e-15 86.7 209 28.7
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 7.7e-15 86.7 195 31.8
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 1.0e-14 86.3 202 31.7
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 1.0e-14 86.3 207 30.9
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 1.3e-14 85.9 209 27.3
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 1.3e-14 85.9 212 30.7
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 1.7e-14 85.5 215 27.9
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 2.3e-14 85.1 204 29.4
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 2.3e-14 85.1 204 30.9
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 2.9e-14 84.7 204 32.4
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 2.9e-14 84.7 209 29.7
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 3.8e-14 84.3 175 29.1
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 5.0e-14 84.0 207 30.4
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 5.0e-14 84.0 207 29.5
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 5.0e-14 84.0 207 29.5
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 5.0e-14 84.0 207 29.5
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 5.0e-14 84.0 177 32.2
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 6.5e-14 83.6 200 29.5
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 6.5e-14 83.6 172 31.4
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 6.5e-14 83.6 172 31.4
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 6.5e-14 83.6 222 29.3
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 4.2e-13 80.9 207 30.0
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 4.2e-13 80.9 228 28.5
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 5.5e-13 80.5 221 26.7
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 7.2e-13 80.1 207 30.0
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 9.5e-13 79.7 231 29.0
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 1.6e-12 79.0 226 29.6
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 6.1e-12 77.0 210 27.6
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 3.0e-11 74.7 221 25.3
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 6.8e-11 73.6 201 29.4
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 6.8e-11 73.6 201 28.4
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 6.8e-11 73.6 200 28.5
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 2.0e-10 72.0 177 29.4
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 2.0e-10 72.0 216 29.6
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 3.4e-10 71.2 148 32.4
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 4.4e-10 70.9 204 27.5
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 1.7e-09 68.9 112 33.0
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 2.8e-09 68.2 216 26.4
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 5.4e-08 63.9 210 27.6
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 3.5e-07 61.2 249 27.7
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 4.5e-07 60.8 111 33.3
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 5.0e-06 57.4 129 32.6
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 6.6e-06 57.0 192 26.6
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 6.6e-06 57.0 100 34.0


User provided reference genes

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