Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0158s0026 Marchantia polymorpha HOM05D006122 ORTHO05D007426 5.0e-128 461.1 224 100.0
Pp3c3_21840 Physcomitrium patens HOM05D006122 ORTHO05D007426 5.2e-77 291.6 222 58.6
MSTRG.22530 Avicennia marina HOM05D006122 ORTHO05D007426 1.9e-63 246.5 225 49.3
TAR383G0669 Trochodendron aralioides HOM05D006122 ORTHO05D007426 1.9e-63 246.5 221 49.3
PGR102G1167 Punica granatum HOM05D006122 ORTHO05D007426 7.3e-63 244.6 221 48.4
MD17G1150700 Malus domestica HOM05D006122 ORTHO05D007426 9.5e-63 244.2 220 48.6
Prupe.3G035300 Prunus persica HOM05D006122 ORTHO05D007426 3.6e-62 242.3 221 47.5
MD09G1176300 Malus domestica HOM05D006122 ORTHO05D007426 4.7e-62 241.9 220 48.2
Cfa003494 Carpinus fangiana HOM05D006122 ORTHO05D007426 1.1e-61 240.7 221 47.1
CiPaw.02G133000 Carya illinoinensis HOM05D006122 ORTHO05D007426 1.1e-61 240.7 220 48.6
Migut.I01117 Erythranthe guttata HOM05D006122 ORTHO05D007426 1.1e-61 240.7 225 48.0
FvH4_6g35380 Fragaria vesca HOM05D006122 ORTHO05D007426 1.8e-61 240.0 217 48.4
TWI59G0171 Tripterygium wilfordii HOM05D006122 ORTHO05D007426 1.8e-61 240.0 220 47.3
Ciclev10026416m.g Citrus clementina HOM05D006122 ORTHO05D007426 4.0e-61 238.8 221 47.1
Eucgr.J02608 Eucalyptus grandis HOM05D006122 ORTHO05D007426 4.0e-61 238.8 221 48.4
DCAR_022657 Daucus carota HOM05D006122 ORTHO05D007426 8.9e-61 237.7 222 45.9
Hma1.2p1_0229F.1_g096920 Hydrangea macrophylla HOM05D006122 ORTHO05D007426 8.9e-61 237.7 221 47.1
Sed0027026 Sechium edule HOM05D006122 ORTHO05D007426 1.5e-60 236.9 222 48.2
AT1G17350 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 2.6e-60 236.1 221 47.5
Sp1g15490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 2.6e-60 236.1 221 48.0
SpUn0033_0060 Schrenkiella parvula HOM05D006122 ORTHO05D007426 2.6e-60 236.1 221 48.0
Thhalv10008577m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 3.4e-60 235.7 221 47.1
PSO832G0128 Papaver somniferum HOM05D006122 ORTHO05D007426 3.4e-60 235.7 220 48.6
RcHm_v2.0_Chr2g0146911 Rosa chinensis HOM05D006122 ORTHO05D007426 3.4e-60 235.7 214 47.7
CSS0025263 Camellia sinensis var. sinensis HOM05D006122 ORTHO05D007426 4.4e-60 235.3 220 48.2
Carub.0001s1711 Capsella rubella HOM05D006122 ORTHO05D007426 4.4e-60 235.3 221 47.5
PSO063G2922 Papaver somniferum HOM05D006122 ORTHO05D007426 4.4e-60 235.3 219 48.9
Dinv37838 Davidia involucrata HOM05D006122 ORTHO05D007426 5.8e-60 235.0 221 45.7
Solyc11g005060.2 Solanum lycopersicum HOM05D006122 ORTHO05D007426 5.8e-60 235.0 221 48.4
THA.LOC104812266 Tarenaya hassleriana HOM05D006122 ORTHO05D007426 5.8e-60 235.0 223 45.7
AL1G29610 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 7.6e-60 234.6 221 47.1
Aqoxy3G03460 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 9.9e-60 234.2 221 45.7
CARHR017950 Cardamine hirsuta HOM05D006122 ORTHO05D007426 1.3e-59 233.8 221 46.2
COL.COLO4_30828 Corchorus olitorius HOM05D006122 ORTHO05D007426 1.3e-59 233.8 221 46.6
HanXRQChr09g0277171 Helianthus annuus HOM05D006122 ORTHO05D007426 1.3e-59 233.8 224 45.5
VMungo0331G0398 Vigna mungo HOM05D006122 ORTHO05D007426 1.7e-59 233.4 223 47.5
Os01g0727400 Oryza sativa ssp. japonica HOM05D006122 ORTHO05D007426 2.9e-59 232.6 225 45.3
Sabra10G0032200 Salix brachista HOM05D000989 ORTHO05D001287 2.9e-59 232.6 221 46.6
Cc04_g00910 Coffea canephora HOM05D006122 ORTHO05D007426 4.9e-59 231.9 225 47.1
HPP92_026812 Vanilla planifolia HOM05D006122 ORTHO05D007426 4.9e-59 231.9 223 46.2
GSVIVG01016699001 Vitis vinifera HOM05D006122 ORTHO05D007426 4.9e-59 231.9 221 45.7
ATR0068G105 Amborella trichopoda HOM05D006122 ORTHO05D007426 6.4e-59 231.5 221 46.2
BcaNung07320 Brassica carinata HOM05D006122 ORTHO05D007426 6.4e-59 231.5 221 47.1
ECA238G0672 Erigeron canadensis HOM05D006122 ORTHO05D007426 6.4e-59 231.5 224 44.6
Glyma.16G011600 Glycine max HOM05D006122 ORTHO05D007426 8.4e-59 231.1 223 45.7
Gohir.D05G140100 Gossypium hirsutum HOM05D006122 ORTHO05D007426 8.4e-59 231.1 221 45.2
Phvul.010G126800 Phaseolus vulgaris HOM05D006122 ORTHO05D007426 8.4e-59 231.1 223 47.1
Actinidia26007 Actinidia chinensis HOM05D006122 ORTHO05D007426 1.1e-58 230.7 221 45.7
Glyma.07G043200 Glycine max HOM05D006122 ORTHO05D007426 1.1e-58 230.7 223 45.7
Medtr8g022330 Medicago truncatula HOM05D006122 ORTHO05D007426 1.1e-58 230.7 224 46.4
Lalb_Chr10g0101271 Lupinus albus HOM05D006122 ORTHO05D007426 1.4e-58 230.3 220 46.4
C05p15780 Brassica napus HOM05D006122 ORTHO05D007426 1.9e-58 229.9 228 46.1
BolC5t30283H Brassica oleracea HOM05D006122 ORTHO05D007426 1.9e-58 229.9 228 46.1
Duzib235G1006 Durio zibethinus HOM05D006122 ORTHO05D007426 1.9e-58 229.9 221 45.2
Potri.010G076600 Populus trichocarpa HOM05D006122 ORTHO05D007426 1.9e-58 229.9 221 45.7
unitig_32.g10995 Utricularia gibba HOM05D006122 ORTHO05D007426 2.4e-58 229.6 220 46.4
CANSAT56G0704 Cannabis sativa HOM05D006122 ORTHO05D007426 3.2e-58 229.2 221 45.2
Hund14473 Selenicereus undatus HOM05D006122 ORTHO05D007426 3.2e-58 229.2 246 43.5
Thecc.06G126900 Theobroma cacao HOM05D006122 ORTHO05D007426 3.2e-58 229.2 221 45.2
A06p13310 Brassica napus HOM05D006122 ORTHO05D007426 4.1e-58 228.8 228 46.1
Lj3g0011237 Lotus japonicus HOM05D006122 ORTHO05D007426 4.1e-58 228.8 223 45.3
QL05p002004 Quercus lobata HOM05D006122 ORTHO05D007426 4.1e-58 228.8 214 46.7
arahy.Tifrunner.gnm1.ann1.JC3XNH Arachis hypogaea HOM05D006122 ORTHO05D007426 5.4e-58 228.4 225 45.3
Manes.11G015100 Manihot esculenta HOM05D006122 ORTHO05D007426 5.4e-58 228.4 221 45.7
Psat4g219480 Pisum sativum HOM05D006122 ORTHO05D007426 5.4e-58 228.4 223 45.7
Sopen11g001060 Solanum pennellii HOM05D006122 ORTHO05D007426 5.4e-58 228.4 235 46.0
BraA06t24484Z Brassica rapa HOM05D006122 ORTHO05D007426 7.1e-58 228.0 227 46.3
Peaxi162Scf01003g00013 Petunia axillaris HOM05D006122 ORTHO05D007426 9.2e-58 227.6 221 46.6
HPP92_000787 Vanilla planifolia HOM05D006122 ORTHO05D007426 1.2e-57 227.3 210 47.1
arahy.Tifrunner.gnm1.ann1.DIA1Z1 Arachis hypogaea HOM05D006122 ORTHO05D007426 1.6e-57 226.9 225 44.9
Gohir.A05G138000 Gossypium hirsutum HOM05D006122 ORTHO05D007426 1.6e-57 226.9 221 44.8
Gorai.009G144400 Gossypium raimondii HOM05D006122 ORTHO05D007426 1.6e-57 226.9 221 44.8
Ca_23414_v3 Cicer arietinum L. HOM05D006122 ORTHO05D007426 2.7e-57 226.1 215 46.5
AUR62018816 Chenopodium quinoa HOM05D006122 ORTHO05D007426 4.6e-57 225.3 230 43.9
Zm00001eb361800 Zea mays HOM05D006122 ORTHO05D007426 3.0e-56 222.6 226 45.1
CBR_g33997 Chara braunii HOM05D006122 ORTHO05D007426 5.1e-56 221.9 227 45.4
CsaV3_4G002610 Cucumis sativus L. HOM05D006122 ORTHO05D007426 5.1e-56 221.9 222 44.6
Carub.0002s1927 Capsella rubella HOM05D006122 ORTHO05D007426 2.5e-55 219.5 222 44.6
EL10Ac5g12242 Beta vulgaris HOM05D006122 ORTHO05D007426 3.3e-55 219.2 222 45.5
CAN.G1227.1 Capsicum annuum HOM05D006122 ORTHO05D007426 3.3e-55 219.2 224 46.0
vmacro22018 Vaccinium macrocarpon HOM05D006122 ORTHO05D007426 3.3e-55 219.2 234 42.3
SGA_v2.0_scaffold71G23902 Striga asiatica HOM05D006122 ORTHO05D007426 5.6e-55 218.4 242 43.8
MELO3C017781.2 Cucumis melo HOM05D006122 ORTHO05D007426 1.2e-54 217.2 208 46.2
CARHR065320 Cardamine hirsuta HOM05D006122 ORTHO05D007426 2.1e-54 216.5 222 44.1
Sp5g27490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 3.6e-54 215.7 222 44.6
AT1G72420 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 4.7e-54 215.3 222 43.2
Lsat_1_v5_gn_8_4120 Lactuca sativa HOM05D006122 ORTHO05D007426 8.1e-54 214.5 225 43.6
Nitab4.5_0001168g0090 Nicotiana tabacum HOM05D006122 ORTHO05D007426 8.1e-54 214.5 207 46.4
Thhalv10019098m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 3.1e-53 212.6 222 45.5
Ah.07g199940 Amaranthus hybridus HOM05D006122 ORTHO05D007426 1.5e-52 210.3 211 45.0
Lj5A31T62 Lonicera japonica HOM05D006122 ORTHO05D007426 3.4e-52 209.1 229 41.9
Rhsim12G0212300 Rhododendron simsii HOM05D006122 ORTHO05D007426 5.8e-52 208.4 270 37.0
CDE02G1839 Ceratophyllum demersum HOM05D006122 ORTHO05D007426 2.9e-51 206.1 222 44.1
AagrBONN_evm.TU.Sc2ySwM_362.2335 Anthoceros agrestis HOM05D006122 ORTHO05D007426 1.1e-47 194.1 231 43.3
Oeu000384.1 Olea europaea HOM05D006122 ORTHO05D007426 2.1e-41 173.3 224 38.4
Aa31LG4G2750 Aethionema arabicum HOM05D006122 ORTHO05D007426 3.5e-41 172.6 211 42.2
MBI13_g36947_MAGBIO Magnolia biondii HOM05D006122 ORTHO05D007426 6.6e-40 168.3 159 47.8
AUR62007187 Chenopodium quinoa HOM05D006122 ORTHO05D007426 1.9e-39 166.8 208 38.5
C06p46770 Brassica napus HOM05D006122 ORTHO05D007426 2.1e-38 163.3 224 36.6
TPR.G16670 Trifolium pratense HOM05D006122 ORTHO05D007426 3.6e-38 162.5 166 44.0
SMO165G0005 Selaginella moellendorffii HOM05D006122 ORTHO05D007426 1.4e-37 160.6 197 39.6
Sc01g0007910 Simmondsia chinensis HOM05D006122 ORTHO05D007426 1.8e-37 160.2 159 43.4
BolC6t39721H Brassica oleracea HOM05D006122 ORTHO05D007426 2.0e-36 156.8 243 33.3
A07p38600 Brassica napus HOM05D006122 ORTHO05D007426 3.4e-36 156.0 235 33.6
Duzib160G0673 Durio zibethinus HOM05D006122 ORTHO05D007426 2.2e-35 153.3 160 41.9
FAN09G0799 Fragaria x ananassa HOM05D006122 ORTHO05D007426 1.1e-34 151.0 155 45.8
Aqoxy301s003 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 1.9e-34 150.2 148 44.6
AL2G32090 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 2.7e-33 146.4 134 44.8
BraA07t31418Z Brassica rapa HOM05D006122 ORTHO05D007426 3.5e-33 146.0 262 30.9
Haze_16093 Corylus avellana HOM05D006122 ORTHO05D007426 1.8e-32 143.7 281 32.4
Haze_16097 Corylus avellana HOM05D006122 ORTHO05D007426 1.8e-32 143.7 281 32.4
SHI23560 Sapria himalayana HOM05D006122 ORTHO05D007426 1.9e-31 140.2 113 54.0
FAN14G0976 Fragaria x ananassa HOM05D006122 ORTHO05D007426 4.3e-31 139.0 217 33.2
Nn1g04517 Nelumbo nucifera HOM05D006122 ORTHO05D007426 2.8e-30 136.3 221 32.1
Cpa.g.sc25.169 Carica papaya HOM05D006122 ORTHO05D007426 6.2e-30 135.2 221 32.1
MCO13G567 Micromonas commoda HOM05D006122 ORTHO05D007426 1.8e-29 133.7 271 31.0
Nn4g23234 Nelumbo nucifera HOM05D006122 ORTHO05D007426 2.4e-29 133.3 135 43.0
BcaB03g14991 Brassica carinata HOM05D006122 ORTHO05D007426 5.8e-28 128.6 135 41.5
SalBow5G3255 Salvia bowleyana HOM05D006122 ORTHO05D007426 1.4e-26 124.0 184 37.5
SEGI_37442 Sequoiadendron giganteum HOM05D006122 ORTHO05D007426 1.9e-26 123.6 94 55.3
Cre02.g076750 Chlamydomonas reinhardtii HOM05D006122 ORTHO05D007426 1.4e-21 107.5 213 31.5
SalBow5G2173 Salvia bowleyana HOM05D006122 ORTHO05D007426 6.9e-21 105.1 143 39.2
TPR.G16651 Trifolium pratense HOM05D006122 ORTHO05D007426 3.4e-12 76.3 62 51.6
PRCOL_00002435 Prasinoderma coloniale HOM05D005310 ORTHO05D006920 5.9e-12 75.5 140 35.7
Psat7g068720 Pisum sativum HOM05D005310 ORTHO05D006920 1.0e-11 74.7 182 29.7
SEGI_40960 Sequoiadendron giganteum HOM05D005310 ORTHO05D006920 6.5e-11 72.0 201 28.4
BcaB03g14993 Brassica carinata HOM05D006122 ORTHO05D007426 5.5e-10 68.9 59 47.5
Ca_17897_v3 Cicer arietinum L. HOM05D005310 ORTHO05D006920 5.5e-10 68.9 139 31.7
Medtr8g087310 Medicago truncatula HOM05D005310 ORTHO05D006920 7.2e-10 68.6 142 31.0
arahy.Tifrunner.gnm1.ann1.W2RHW2 Arachis hypogaea HOM05D005310 ORTHO05D006920 9.4e-10 68.2 138 30.4
TPR.G6733 Trifolium pratense HOM05D005310 ORTHO05D006920 2.1e-09 67.0 142 29.6
Glyma.05G161000 Glycine max HOM05D005310 ORTHO05D006920 2.7e-09 66.6 138 30.4
Glyma.08G118400 Glycine max HOM05D005310 ORTHO05D006920 2.7e-09 66.6 138 31.2
Sc05g0006870 Simmondsia chinensis HOM05D005310 ORTHO05D006920 2.7e-09 66.6 138 29.7
Phvul.002G241100 Phaseolus vulgaris HOM05D005310 ORTHO05D006920 4.6e-09 65.9 138 30.4
VMungo0251G0247 Vigna mungo HOM05D005310 ORTHO05D006920 4.6e-09 65.9 138 30.4
CSS0016268 Camellia sinensis var. sinensis HOM05D005310 ORTHO05D006920 6.1e-09 65.5 149 27.5
Lj4g0024191 Lotus japonicus HOM05D005310 ORTHO05D006920 1.0e-08 64.7 133 33.1
Lalb_Chr12g0204951 Lupinus albus HOM05D005310 ORTHO05D006920 1.0e-08 64.7 138 31.2
Actinidia31156 Actinidia chinensis HOM05D006122 ORTHO05D007426 3.0e-08 63.2 86 32.6
Hund04397 Selenicereus undatus HOM05D005310 ORTHO05D006920 5.7e-07 58.9 117 32.5
Nn1g08880 Nelumbo nucifera HOM05D006122 ORTHO05D007426 1.3e-06 57.8 51 43.1
CAN.G526.12 Capsicum annuum HOM05D006122 ORTHO05D007426 6.3e-06 55.5 92 30.4


User provided reference genes

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