Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0158s0003 Marchantia polymorpha HOM05D003215 ORTHO05D003735 1.2e-205 719.5 353 100.0
Pp3c4_2120 Physcomitrium patens HOM05D003215 ORTHO05D003735 1.8e-55 220.7 341 38.4
AagrBONN_evm.TU.Sc2ySwM_344.2899 Anthoceros agrestis HOM05D003215 ORTHO05D003735 4.2e-49 199.5 338 38.2
EL10As2g23156 Beta vulgaris HOM05D003215 ORTHO05D003735 3.6e-48 196.4 324 34.9
Lalb_Chr01g0022221 Lupinus albus HOM05D003215 ORTHO05D003735 4.0e-47 193.0 275 36.0
Zm00001eb172100 Zea mays HOM05D003215 ORTHO05D003735 4.0e-47 193.0 337 36.2
Dinv29349 Davidia involucrata HOM05D003215 ORTHO05D003735 1.2e-46 191.4 334 33.5
Sopen03g029820 Solanum pennellii HOM05D003215 ORTHO05D003735 3.4e-46 189.9 338 34.9
HanXRQChr10g0309901 Helianthus annuus HOM05D003215 ORTHO05D003735 5.7e-46 189.1 295 34.6
Sabra03G0123800 Salix brachista HOM05D003215 ORTHO05D003735 5.7e-46 189.1 272 36.8
CARHR213350 Cardamine hirsuta HOM05D003215 ORTHO05D003735 7.5e-46 188.7 275 36.0
Cc11_g08560 Coffea canephora HOM05D003215 ORTHO05D003735 1.3e-45 188.0 340 35.3
Glyma.13G128500 Glycine max HOM05D003215 ORTHO05D003735 2.2e-45 187.2 275 34.9
PGSC0003DMG400015274 Solanum tuberosum HOM05D003215 ORTHO05D003735 2.2e-45 187.2 338 34.3
Sc24g0002070 Simmondsia chinensis HOM05D003215 ORTHO05D003735 2.8e-45 186.8 297 36.4
Carub.0007s3447 Capsella rubella HOM05D003215 ORTHO05D003735 3.7e-45 186.4 311 33.8
Manes.11G149200 Manihot esculenta HOM05D003215 ORTHO05D003735 3.7e-45 186.4 338 33.1
Nitab4.5_0004170g0030 Nicotiana tabacum HOM05D003215 ORTHO05D003735 3.7e-45 186.4 337 32.9
Peaxi162Scf01390g00030 Petunia axillaris HOM05D003215 ORTHO05D003735 3.7e-45 186.4 338 33.4
Peaxi162Scf01390g00031 Petunia axillaris HOM05D001168 ORTHO05D003735 3.7e-45 186.4 338 33.4
vmacro10400 Vaccinium macrocarpon HOM05D003215 ORTHO05D003735 3.7e-45 186.4 307 34.9
EL10Ac1g02277 Beta vulgaris HOM05D003215 ORTHO05D003735 6.3e-45 185.7 349 33.5
TWI18G1003 Tripterygium wilfordii HOM05D003215 ORTHO05D003735 6.3e-45 185.7 310 34.8
Rhsim09G0130800 Rhododendron simsii HOM05D003215 ORTHO05D003735 8.3e-45 185.3 341 31.7
Aa31LG9G750 Aethionema arabicum HOM05D003215 ORTHO05D003735 1.4e-44 184.5 278 36.0
Potri.015G095000 Populus trichocarpa HOM05D003215 ORTHO05D003735 1.4e-44 184.5 272 36.0
Phvul.007G154900 Phaseolus vulgaris HOM05D003215 ORTHO05D003735 1.8e-44 184.1 275 35.6
AL7G48530 Arabidopsis lyrata HOM05D003215 ORTHO05D003735 4.1e-44 183.0 286 32.9
BraA04t17067Z Brassica rapa HOM05D003215 ORTHO05D003735 4.1e-44 183.0 315 34.6
CSS0012061 Camellia sinensis var. sinensis HOM05D003215 ORTHO05D003735 5.4e-44 182.6 341 32.8
QL09p047318 Quercus lobata HOM05D003215 ORTHO05D003735 5.4e-44 182.6 286 34.3
A04p14060 Brassica napus HOM05D003215 ORTHO05D003735 7.0e-44 182.2 315 34.6
BolC4t26400H Brassica oleracea HOM05D003215 ORTHO05D003735 7.0e-44 182.2 330 33.3
Lj1g0005602 Lotus japonicus HOM05D003215 ORTHO05D003735 9.2e-44 181.8 275 35.6
QL05p019413 Quercus lobata HOM05D003215 ORTHO05D003735 9.2e-44 181.8 286 33.9
BcaB06g27584 Brassica carinata HOM05D003215 ORTHO05D003735 1.2e-43 181.4 312 34.0
Ciclev10014556m.g Citrus clementina HOM05D003215 ORTHO05D003735 1.6e-43 181.0 319 34.5
PGSC0003DMG400011852 Solanum tuberosum HOM05D003215 ORTHO05D003735 1.6e-43 181.0 336 32.7
BcaB06g26361 Brassica carinata HOM05D003215 ORTHO05D003735 2.7e-43 180.3 275 35.6
ECA236G3716 Erigeron canadensis HOM05D003215 ORTHO05D003735 2.7e-43 180.3 333 32.4
Ca_14134_v3 Cicer arietinum L. HOM05D003215 ORTHO05D003735 3.5e-43 179.9 280 33.9
Nitab4.5_0000185g0060 Nicotiana tabacum HOM05D003215 ORTHO05D003735 3.5e-43 179.9 315 31.7
CAN.G3121.3 Capsicum annuum HOM05D003215 ORTHO05D003735 4.5e-43 179.5 280 35.0
Cpa.g.sc65.22 Carica papaya HOM05D003215 ORTHO05D003735 4.5e-43 179.5 323 31.6
arahy.Tifrunner.gnm1.ann1.7W7N8S Arachis hypogaea HOM05D003215 ORTHO05D003735 5.9e-43 179.1 274 32.5
Ciclev10030284m.g Citrus clementina HOM05D003215 ORTHO05D003735 5.9e-43 179.1 346 33.2
TPR.G16275 Trifolium pratense HOM05D003215 ORTHO05D003735 5.9e-43 179.1 275 35.6
BcaNung03841 Brassica carinata HOM05D003215 ORTHO05D003735 7.8e-43 178.7 285 36.8
BcaC02g08984 Brassica carinata HOM05D003215 ORTHO05D003735 1.0e-42 178.3 287 35.5
CAN.G861.12 Capsicum annuum HOM05D003215 ORTHO05D003735 1.0e-42 178.3 328 33.5
Sp7g00890 Schrenkiella parvula HOM05D003215 ORTHO05D003735 1.0e-42 178.3 312 33.0
Solyc08g066190.2 Solanum lycopersicum HOM05D003215 ORTHO05D003735 1.0e-42 178.3 338 33.4
Sopen08g019870 Solanum pennellii HOM05D003215 ORTHO05D003735 1.7e-42 177.6 340 33.2
Nitab4.5_0000712g0010 Nicotiana tabacum HOM05D003215 ORTHO05D003735 2.3e-42 177.2 337 30.6
Potri.003G168900 Populus trichocarpa HOM05D003215 ORTHO05D003735 2.3e-42 177.2 341 33.4
TAR626G0419 Trochodendron aralioides HOM05D003215 ORTHO05D003735 2.9e-42 176.8 322 33.2
Actinidia34779 Actinidia chinensis HOM05D003215 ORTHO05D003735 3.8e-42 176.4 335 32.5
Thhalv10027663m.g Eutrema salsugineum HOM05D003215 ORTHO05D003735 3.8e-42 176.4 276 34.4
ECA233G3624 Erigeron canadensis HOM05D003215 ORTHO05D003735 5.0e-42 176.0 337 33.2
Manes.04G016500 Manihot esculenta HOM05D003215 ORTHO05D003735 5.0e-42 176.0 308 33.1
Peaxi162Scf00029g00131 Petunia axillaris HOM05D003215 ORTHO05D003735 5.0e-42 176.0 337 32.0
Oeu046322.1 Olea europaea HOM05D003215 ORTHO05D003735 6.6e-42 175.6 340 31.8
TWI31G0331 Tripterygium wilfordii HOM05D003215 ORTHO05D003735 6.6e-42 175.6 319 33.9
CAN.G861.14 Capsicum annuum HOM05D003215 ORTHO05D003735 1.1e-41 174.9 245 37.6
AUR62027593 Chenopodium quinoa HOM05D003215 ORTHO05D003735 1.1e-41 174.9 292 31.8
Eucgr.H02514 Eucalyptus grandis HOM05D003215 ORTHO05D003735 1.1e-41 174.9 326 33.7
Oeu050248.1 Olea europaea HOM05D003215 ORTHO05D003735 1.5e-41 174.5 340 30.9
Haze_21721 Corylus avellana HOM05D003215 ORTHO05D003735 1.9e-41 174.1 347 32.0
Nitab4.5_0000712g0020 Nicotiana tabacum HOM05D003215 ORTHO05D003735 1.9e-41 174.1 315 31.4
DCAR_004337 Daucus carota HOM05D003215 ORTHO05D003735 2.5e-41 173.7 274 35.4
DCAR_024215 Daucus carota HOM05D003215 ORTHO05D003735 2.5e-41 173.7 274 35.4
Lj4C665T1 Lonicera japonica HOM05D003215 ORTHO05D003735 2.5e-41 173.7 345 32.8
Lj4C675G2 Lonicera japonica HOM05D003215 ORTHO05D003735 2.5e-41 173.7 275 34.5
CiPaw.11G100100 Carya illinoinensis HOM05D003215 ORTHO05D003735 3.3e-41 173.3 288 34.0
DCAR_024216 Daucus carota HOM05D003215 ORTHO05D003735 3.3e-41 173.3 274 35.4
Nitab4.5_0000712g0040 Nicotiana tabacum HOM05D003215 ORTHO05D003735 5.6e-41 172.6 276 33.0
AUR62030249 Chenopodium quinoa HOM05D003215 ORTHO05D003735 9.5e-41 171.8 324 30.6
Nitab4.5_0000185g0040 Nicotiana tabacum HOM05D003215 ORTHO05D003735 9.5e-41 171.8 276 33.0
MBI05_g27786_MAGBIO Magnolia biondii HOM05D003215 ORTHO05D003735 1.2e-40 171.4 328 32.9
Solyc08g007300.3 Solanum lycopersicum HOM05D003215 ORTHO05D003735 1.2e-40 171.4 316 32.0
BcaC09g51256 Brassica carinata HOM05D003215 ORTHO05D003735 1.6e-40 171.0 276 33.3
LjContig00081g0004985 Lotus japonicus HOM05D003215 ORTHO05D003735 1.6e-40 171.0 350 30.9
PGR083G2356 Punica granatum HOM05D003215 ORTHO05D003735 2.1e-40 170.6 311 32.2
MD04G1037700 Malus domestica HOM05D003215 ORTHO05D003735 2.8e-40 170.2 339 30.7
Aqoxy6G03074 Aquilegia oxysepala HOM05D003215 ORTHO05D003735 3.6e-40 169.9 268 35.4
BcaC05g28060 Brassica carinata HOM05D003215 ORTHO05D003735 3.6e-40 169.9 275 33.5
THA.LOC104815051 Tarenaya hassleriana HOM05D003215 ORTHO05D003735 3.6e-40 169.9 293 34.8
Atru.chr3.3572 Acer truncatum HOM05D003215 ORTHO05D003735 4.7e-40 169.5 264 34.8
Cfa013261 Carpinus fangiana HOM05D003215 ORTHO05D003735 4.7e-40 169.5 290 32.8
DCAR_008318 Daucus carota HOM05D003215 ORTHO05D003735 4.7e-40 169.5 274 33.9
Sed0005911 Sechium edule HOM05D003215 ORTHO05D003735 4.7e-40 169.5 333 32.1
Atru.chr3.3574 Acer truncatum HOM05D003215 ORTHO05D003735 6.1e-40 169.1 315 33.3
Sopen08g003240 Solanum pennellii HOM05D003215 ORTHO05D003735 6.1e-40 169.1 337 30.9
HanXRQChr11g0328481 Helianthus annuus HOM05D003215 ORTHO05D003735 8.0e-40 168.7 276 33.3
MSTRG.4371 Avicennia marina HOM05D003215 ORTHO05D003735 1.0e-39 168.3 292 32.9
Aqoxy4G00232 Aquilegia oxysepala HOM05D003215 ORTHO05D003735 1.4e-39 167.9 268 35.1
AT5G41020 Arabidopsis thaliana HOM05D003215 ORTHO05D003735 1.4e-39 167.9 339 29.5
MELO3C006154.2 Cucumis melo HOM05D003215 ORTHO05D003735 1.8e-39 167.5 319 32.0
CsaV3_3G009340 Cucumis sativus L. HOM05D003215 ORTHO05D003735 1.8e-39 167.5 340 30.9
Nn7g37196 Nelumbo nucifera HOM05D003215 ORTHO05D003735 1.8e-39 167.5 339 32.7
THA.LOC104816721 Tarenaya hassleriana HOM05D003215 ORTHO05D003735 1.8e-39 167.5 328 33.2
unitig_52.g17692 Utricularia gibba HOM05D003215 ORTHO05D003735 1.8e-39 167.5 277 33.6
CDE11G0705 Ceratophyllum demersum HOM05D003215 ORTHO05D003735 2.3e-39 167.2 267 37.1
Aqoxy2G04188 Aquilegia oxysepala HOM05D003215 ORTHO05D003735 3.0e-39 166.8 264 35.6
Aa31LG9G1040 Aethionema arabicum HOM05D003215 ORTHO05D003735 4.0e-39 166.4 328 31.7
CiPaw.15G124500 Carya illinoinensis HOM05D003215 ORTHO05D003735 4.0e-39 166.4 268 34.3
Migut.D01938 Erythranthe guttata HOM05D003215 ORTHO05D003735 4.0e-39 166.4 275 31.6
COL.COLO4_18286 Corchorus olitorius HOM05D003215 ORTHO05D003735 5.2e-39 166.0 322 30.7
Hma1.2p1_0892F.1_g233410 Hydrangea macrophylla HOM05D003215 ORTHO05D003735 5.2e-39 166.0 344 32.0
TWI31G0413 Tripterygium wilfordii HOM05D003215 ORTHO05D003735 6.8e-39 165.6 337 31.8
Psat4g091440 Pisum sativum HOM05D003215 ORTHO05D003735 8.9e-39 165.2 268 34.0
ClCG05G001940 Citrullus lanatus HOM05D003215 ORTHO05D003735 1.2e-38 164.9 345 30.7
THA.LOC104815151 Tarenaya hassleriana HOM05D003215 ORTHO05D003735 1.2e-38 164.9 257 36.2
Psat1g024480 Pisum sativum HOM05D003215 ORTHO05D003735 1.5e-38 164.5 275 33.1
Migut.D01937 Erythranthe guttata HOM05D003215 ORTHO05D003735 2.0e-38 164.1 289 32.5
Mapoly0091s0012 Marchantia polymorpha HOM05D003215 ORTHO05D003735 2.6e-38 163.7 325 33.5
SalBow6G4532 Salvia bowleyana HOM05D003215 ORTHO05D003735 2.6e-38 163.7 323 31.0
Gorai.013G268300 Gossypium raimondii HOM05D003215 ORTHO05D003735 4.4e-38 162.9 286 31.1
Thecc.09G346500 Theobroma cacao HOM05D003215 ORTHO05D003735 4.4e-38 162.9 275 32.4
Atru.chr3.3575 Acer truncatum HOM05D003215 ORTHO05D003735 7.5e-38 162.2 244 36.1
Gohir.D13G237500 Gossypium hirsutum HOM05D003215 ORTHO05D003735 1.7e-37 161.0 286 31.1
Lsat_1_v5_gn_7_104201 Lactuca sativa HOM05D003215 ORTHO05D003735 2.2e-37 160.6 310 32.6
Prupe.6G106700 Prunus persica HOM05D003215 ORTHO05D003735 6.4e-37 159.1 358 29.9
Hund25131 Selenicereus undatus HOM05D003215 ORTHO05D003735 6.4e-37 159.1 337 30.0
PSO210G2437 Papaver somniferum HOM05D003215 ORTHO05D003735 8.3e-37 158.7 276 33.0
PSO210G0114 Papaver somniferum HOM05D003215 ORTHO05D003735 2.4e-36 157.1 246 33.7
Aa31LG9G1030 Aethionema arabicum HOM05D003215 ORTHO05D003735 3.2e-36 156.8 277 34.7
SGA_v2.0_scaffold114G31828 Striga asiatica HOM05D003215 ORTHO05D003735 3.2e-36 156.8 272 32.4
PSO210G2801 Papaver somniferum HOM05D003215 ORTHO05D003735 4.1e-36 156.4 276 32.6
PSO170G2126 Papaver somniferum HOM05D003215 ORTHO05D003735 9.2e-36 155.2 276 33.0
Duzib168G1098 Durio zibethinus HOM05D003215 ORTHO05D003735 2.0e-35 154.1 327 29.7
FAN16G3289 Fragaria x ananassa HOM05D003215 ORTHO05D003735 2.0e-35 154.1 350 31.4
SHI08388 Sapria himalayana HOM05D003215 ORTHO05D003735 3.5e-35 153.3 286 31.5
SGA_v2.0_scaffold124G33628 Striga asiatica HOM05D003215 ORTHO05D003735 3.5e-35 153.3 332 28.9
Gohir.A13G231900 Gossypium hirsutum HOM05D003215 ORTHO05D003735 4.6e-35 152.9 249 31.7
Prupe.6G210800 Prunus persica HOM05D003215 ORTHO05D003735 4.6e-35 152.9 327 29.7
RcHm_v2.0_Chr5g0058161 Rosa chinensis HOM05D003215 ORTHO05D003735 6.0e-35 152.5 349 30.4
Mapoly0057s0043 Marchantia polymorpha HOM05D003215 ORTHO05D003735 7.8e-35 152.1 243 37.4
FAN21G3495 Fragaria x ananassa HOM05D003215 ORTHO05D003735 1.0e-34 151.8 348 30.7
FvH4_3g31460 Fragaria vesca HOM05D003215 ORTHO05D003735 1.3e-34 151.4 349 30.4
FAN11G0613 Fragaria x ananassa HOM05D003215 ORTHO05D003735 1.3e-34 151.4 349 30.4
CANSAT54G0322 Cannabis sativa HOM05D003215 ORTHO05D003735 2.3e-34 150.6 339 29.2
Lj3g0014709 Lotus japonicus HOM05D003215 ORTHO05D003735 3.0e-34 150.2 275 30.9
Peaxi162Scf00102g00926 Petunia axillaris HOM05D003215 ORTHO05D003735 1.9e-33 147.5 224 34.8
HPP92_007494 Vanilla planifolia HOM05D003215 ORTHO05D003735 3.3e-33 146.7 332 31.0
PSO675G7906 Papaver somniferum HOM05D003215 ORTHO05D003735 1.6e-32 144.4 250 32.0
Medtr8g077990 Medicago truncatula HOM05D003215 ORTHO05D003735 1.4e-31 141.4 280 30.4
PSO210G4537 Papaver somniferum HOM05D003215 ORTHO05D003735 1.4e-31 141.4 247 32.4
Solyc03g019800.4 Solanum lycopersicum HOM05D003215 ORTHO05D003735 1.4e-31 141.4 202 37.6
BolC5t32818H Brassica oleracea HOM05D003215 ORTHO05D003735 8.9e-31 138.7 207 35.3
C05p40730 Brassica napus HOM05D003215 ORTHO05D003735 1.2e-30 138.3 207 35.3
Haze_25499 Corylus avellana HOM05D003215 ORTHO05D003735 1.3e-29 134.8 287 29.3
PSO210G4587 Papaver somniferum HOM05D003215 ORTHO05D003735 7.0e-28 129.0 300 29.7
Cre14.g632176 Chlamydomonas reinhardtii HOM05D003215 ORTHO05D003735 1.0e-26 125.2 348 27.0
TPR.G12921 Trifolium pratense HOM05D003215 ORTHO05D003735 3.9e-26 123.2 317 28.1
RcHm_v2.0_Chr7g0227601 Rosa chinensis HOM05D003215 ORTHO05D003735 6.8e-23 112.5 305 29.2
EL10Ac6g13885 Beta vulgaris HOM05D003215 ORTHO05D003735 8.9e-23 112.1 323 27.9
MCO03G213 Micromonas commoda HOM05D003215 ORTHO05D003735 3.4e-22 110.2 339 26.8
C04p48090 Brassica napus HOM05D003215 ORTHO05D003735 1.3e-21 108.2 230 31.7
TPR.G20272 Trifolium pratense HOM05D003215 ORTHO05D003735 4.6e-19 99.8 283 27.2
Sed0019703 Sechium edule HOM05D003215 ORTHO05D003735 2.3e-18 97.4 340 25.9
BolC1t01455H Brassica oleracea HOM05D003215 ORTHO05D003735 6.6e-18 95.9 126 37.3
C01p15060 Brassica napus HOM05D003215 ORTHO05D003735 1.1e-17 95.1 126 37.3
RcHm_v2.0_Chr7g0222761 Rosa chinensis HOM05D003215 ORTHO05D003735 2.1e-16 90.9 117 41.0
PSO357G0671 Papaver somniferum HOM05D003215 ORTHO05D003735 1.1e-15 88.6 162 32.7
Os06g0303700 Oryza sativa ssp. japonica HOM05D003215 ORTHO05D003735 1.4e-12 78.2 116 34.5
ATR0751G201 Amborella trichopoda HOM05D003215 ORTHO05D003735 5.4e-12 76.3 92 39.1
Medtr1g076600 Medicago truncatula HOM05D003215 ORTHO05D003735 2.3e-10 70.9 97 34.0
BcaC09g51258 Brassica carinata HOM05D003215 ORTHO05D003735 2.8e-08 63.9 86 37.2
SEGI_39348 Sequoiadendron giganteum HOM05D003215 ORTHO05D003735 4.7e-08 63.2 58 50.0
AL3G31260 Arabidopsis lyrata HOM05D005181 ORTHO05D006086 1.4e-07 61.6 221 26.7
BcaNung03843 Brassica carinata HOM05D003215 ORTHO05D003735 6.9e-07 59.3 89 38.2
Medtr7g029435 Medicago truncatula HOM05D003215 ORTHO05D003735 2.0e-06 57.8 86 32.6
Peaxi162Scf00413g00068 Petunia axillaris HOM05D003215 ORTHO05D003735 2.6e-06 57.4 150 26.7


User provided reference genes

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