Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0158s0001 Marchantia polymorpha HOM05D000874 ORTHO05D001049 6.9e-198 693.7 341 100.0
Mapoly0027s0138 Marchantia polymorpha HOM05D000874 ORTHO05D001049 5.8e-19 99.4 234 29.5
Cc03_g08740 Coffea canephora HOM05D000874 ORTHO05D001049 1.6e-13 81.3 216 27.8
Thhalv10012375m.g Eutrema salsugineum HOM05D000874 ORTHO05D001049 1.1e-12 78.6 196 28.6
Psat3g203040 Pisum sativum HOM05D000874 ORTHO05D001049 1.1e-12 78.6 243 28.0
Zm00001eb214660 Zea mays HOM05D000874 ORTHO05D001049 1.1e-12 78.6 204 33.3
Thecc.04G097500 Theobroma cacao HOM05D000874 ORTHO05D001049 3.1e-12 77.0 288 28.8
Cc02_g31400 Coffea canephora HOM05D000874 ORTHO05D001049 4.0e-12 76.6 192 26.6
Cc02_g38660 Coffea canephora HOM05D000874 ORTHO05D001049 8.9e-12 75.5 196 26.0
QL02p067387 Quercus lobata HOM05D000874 ORTHO05D001049 1.2e-11 75.1 222 29.7
Medtr7g015150 Medicago truncatula HOM05D000874 ORTHO05D001049 2.0e-11 74.3 175 32.0
Medtr7g015190 Medicago truncatula HOM05D000874 ORTHO05D001049 3.4e-11 73.6 208 29.3
TWI09G0140 Tripterygium wilfordii HOM05D000874 ORTHO05D001049 5.8e-11 72.8 211 27.0
TAR371G0757 Trochodendron aralioides HOM05D000874 ORTHO05D001049 5.8e-11 72.8 172 31.4
Lsat_1_v5_gn_1_14680 Lactuca sativa HOM05D000874 ORTHO05D001049 9.9e-11 72.0 203 29.1
HanXRQChr16g0521781 Helianthus annuus HOM05D000874 ORTHO05D001049 1.3e-10 71.6 204 31.4
Gohir.A09G008700 Gossypium hirsutum HOM05D000874 ORTHO05D001049 1.7e-10 71.2 311 26.4
Gohir.D09G008000 Gossypium hirsutum HOM05D000874 ORTHO05D001049 1.7e-10 71.2 346 25.4
TWI32G0665 Tripterygium wilfordii HOM05D000874 ORTHO05D001049 2.2e-10 70.9 177 31.1
VMungo1383G1838 Vigna mungo HOM05D000874 ORTHO05D001049 2.2e-10 70.9 176 31.2
Aa31LG7G3380 Aethionema arabicum HOM05D001693 ORTHO05D001588 3.8e-10 70.1 200 30.0
ECA247G2112 Erigeron canadensis HOM05D000874 ORTHO05D001049 3.8e-10 70.1 203 28.6
Medtr7g015170 Medicago truncatula HOM05D000874 ORTHO05D001049 4.9e-10 69.7 175 30.3
Phvul.008G031500 Phaseolus vulgaris HOM05D000874 ORTHO05D001049 4.9e-10 69.7 203 30.5
Nn4g23457 Nelumbo nucifera HOM05D000874 ORTHO05D001049 8.4e-10 68.9 184 30.4
Lj1g0025553 Lotus japonicus HOM05D000874 ORTHO05D001049 1.1e-09 68.6 205 28.3
TPR.G33414 Trifolium pratense HOM05D000874 ORTHO05D001049 1.1e-09 68.6 231 26.0
Ciclev10013325m.g Citrus clementina HOM05D000874 ORTHO05D001049 1.4e-09 68.2 221 26.7
Zm00001eb118130 Zea mays HOM05D000874 ORTHO05D001049 1.4e-09 68.2 283 26.9
Ca_13746_v3 Cicer arietinum L. HOM05D000874 ORTHO05D001049 1.9e-09 67.8 178 30.3
Cc00_g35250 Coffea canephora HOM05D000874 ORTHO05D001049 1.9e-09 67.8 209 24.9
Sed0001058 Sechium edule HOM05D000874 ORTHO05D001049 1.9e-09 67.8 193 26.9
Medtr7g015180 Medicago truncatula HOM05D000874 ORTHO05D001049 2.4e-09 67.4 208 29.3
Cfa007680 Carpinus fangiana HOM05D000874 ORTHO05D001049 3.2e-09 67.0 212 28.8
COL.COLO4_37968 Corchorus olitorius HOM05D000874 ORTHO05D001049 3.2e-09 67.0 259 28.6
Gorai.006G009600 Gossypium raimondii HOM05D000874 ORTHO05D001049 3.2e-09 67.0 306 25.5
Cc07_g19840 Coffea canephora HOM05D000874 ORTHO05D001049 4.1e-09 66.6 193 26.4
Solyc02g065790.3 Solanum lycopersicum HOM05D000874 ORTHO05D001049 4.1e-09 66.6 196 28.6
Sopen02g016030 Solanum pennellii HOM05D000874 ORTHO05D001049 4.1e-09 66.6 196 28.6
AL5G20130 Arabidopsis lyrata HOM05D000874 ORTHO05D001049 5.4e-09 66.2 219 26.0
Cc08_g08840 Coffea canephora HOM05D000874 ORTHO05D001049 5.4e-09 66.2 152 28.9
Haze_19522 Corylus avellana HOM05D000874 ORTHO05D001049 5.4e-09 66.2 161 32.9
Glyma.18G269100 Glycine max HOM05D000874 ORTHO05D001049 5.4e-09 66.2 178 30.9
TPR.G33468 Trifolium pratense HOM05D000874 ORTHO05D001049 5.4e-09 66.2 173 30.1
VMungo0464G1171 Vigna mungo HOM05D000874 ORTHO05D001049 5.4e-09 66.2 181 28.7
Cfa016521 Carpinus fangiana HOM05D000874 ORTHO05D001049 7.1e-09 65.9 172 32.0
Lju41C2T8 Lonicera japonica HOM05D000874 ORTHO05D001049 7.1e-09 65.9 203 28.6
Lj2g0001379 Lotus japonicus HOM05D000874 ORTHO05D001049 7.1e-09 65.9 247 25.9
TPR.G31312 Trifolium pratense HOM05D000874 ORTHO05D001049 7.1e-09 65.9 172 30.2
HPP92_020452 Vanilla planifolia HOM05D000874 ORTHO05D001049 7.1e-09 65.9 171 30.4
EL10Ac7g17013 Beta vulgaris HOM05D000874 ORTHO05D001049 9.2e-09 65.5 206 29.1
PGSC0003DMG400026552 Solanum tuberosum HOM05D000874 ORTHO05D001049 9.2e-09 65.5 224 26.8
CiPaw.03G087800 Carya illinoinensis HOM05D000874 ORTHO05D001049 1.2e-08 65.1 179 27.9
Peaxi162Scf00991g00113 Petunia axillaris HOM05D000874 ORTHO05D001049 1.2e-08 65.1 176 28.4
HanXRQChr11g0351081 Helianthus annuus HOM05D000874 ORTHO05D001049 1.6e-08 64.7 179 28.5
PSO017G2036 Papaver somniferum HOM05D000874 ORTHO05D001049 1.6e-08 64.7 201 28.4
Phvul.004G037900 Phaseolus vulgaris HOM05D000874 ORTHO05D001049 2.1e-08 64.3 183 29.5
HanXRQChr02g0041441 Helianthus annuus HOM05D000874 ORTHO05D001049 2.7e-08 63.9 201 28.9
AT3G29760 Arabidopsis thaliana HOM05D000874 ORTHO05D001049 3.5e-08 63.5 217 26.3
Lj2A127G88 Lonicera japonica HOM05D000874 ORTHO05D001049 3.5e-08 63.5 170 29.4
Peaxi162Scf00991g00016 Petunia axillaris HOM05D000874 ORTHO05D001049 3.5e-08 63.5 181 28.2
QL93p0356_0092 Quercus lobata HOM05D000874 ORTHO05D001049 3.5e-08 63.5 228 31.6
CSS0021526 Camellia sinensis var. sinensis HOM05D000874 ORTHO05D001049 4.6e-08 63.2 184 27.7
CSS0038877 Camellia sinensis var. sinensis HOM05D000874 ORTHO05D001049 4.6e-08 63.2 184 27.7
Carub.0005s0832 Capsella rubella HOM05D000874 ORTHO05D001049 4.6e-08 63.2 178 28.1
Dinv34933 Davidia involucrata HOM05D000874 ORTHO05D001049 4.6e-08 63.2 235 26.8
Gohir.D11G065100 Gossypium hirsutum HOM05D000874 ORTHO05D001049 4.6e-08 63.2 184 28.3
Gorai.007G070300 Gossypium raimondii HOM05D000874 ORTHO05D001049 4.6e-08 63.2 184 28.8
Sc14g0006370 Simmondsia chinensis HOM05D000874 ORTHO05D001049 6.0e-08 62.8 179 26.3
Medtr7g015130 Medicago truncatula HOM05D000874 ORTHO05D001049 7.8e-08 62.4 176 28.4
Pp3c1_36710 Physcomitrium patens HOM05D009770 ORTHO05D015178 7.8e-08 62.4 244 26.6
Pp3c8_24140 Physcomitrium patens HOM05D000874 ORTHO05D001049 7.8e-08 62.4 165 29.7
GSVIVG01008112001 Vitis vinifera HOM05D000874 ORTHO05D001049 7.8e-08 62.4 201 27.9
Atru.chr8.481 Acer truncatum HOM05D000874 ORTHO05D001049 1.0e-07 62.0 169 30.2
Nn3g17472 Nelumbo nucifera HOM05D000874 ORTHO05D001049 1.3e-07 61.6 236 27.1
Pp3c6_22530 Physcomitrium patens HOM05D009770 ORTHO05D015178 1.3e-07 61.6 204 28.4
Psat0s4383g0040 Pisum sativum HOM05D000874 ORTHO05D001049 1.3e-07 61.6 171 29.2
Gohir.A11G061000 Gossypium hirsutum HOM05D000874 ORTHO05D001049 1.7e-07 61.2 182 28.6
Lalb_Chr02g0158871 Lupinus albus HOM05D000874 ORTHO05D001049 1.7e-07 61.2 185 28.1
Oeu062169.2 Olea europaea HOM05D000874 ORTHO05D001049 1.7e-07 61.2 179 27.4
TPR.G7022 Trifolium pratense HOM05D000874 ORTHO05D001049 1.7e-07 61.2 200 24.5
Actinidia38430 Actinidia chinensis HOM05D000874 ORTHO05D001049 2.3e-07 60.8 167 27.5
Cfa016522 Carpinus fangiana HOM05D000874 ORTHO05D001049 2.3e-07 60.8 218 25.2
ECA246G4580 Erigeron canadensis HOM05D000874 ORTHO05D001049 2.3e-07 60.8 177 31.1
RcHm_v2.0_Chr4g0442541 Rosa chinensis HOM05D000874 ORTHO05D001049 2.3e-07 60.8 180 27.2
AUR62033596 Chenopodium quinoa HOM05D000874 ORTHO05D001049 3.0e-07 60.5 178 28.1
COL.COLO4_37969 Corchorus olitorius HOM05D000874 ORTHO05D001049 3.0e-07 60.5 285 26.3
Eucgr.J01384 Eucalyptus grandis HOM05D000874 ORTHO05D001049 3.0e-07 60.5 227 25.6
Nitab4.5_0000212g0290 Nicotiana tabacum HOM05D000874 ORTHO05D001049 3.0e-07 60.5 176 26.1
QL10p019915 Quercus lobata HOM05D000874 ORTHO05D001049 3.0e-07 60.5 195 28.2
vmacro18143 Vaccinium macrocarpon HOM05D000874 ORTHO05D001049 3.0e-07 60.5 193 25.9
Cc07_g20960 Coffea canephora HOM05D000874 ORTHO05D001049 3.9e-07 60.1 155 26.5
DCAR_013957 Daucus carota HOM05D000874 ORTHO05D001049 3.9e-07 60.1 192 27.1
DCAR_010160 Daucus carota HOM05D000874 ORTHO05D001049 5.1e-07 59.7 233 24.9
Glyma.19G031600 Glycine max HOM05D000874 ORTHO05D001049 5.1e-07 59.7 181 27.1
PSO063G7126 Papaver somniferum HOM05D000874 ORTHO05D001049 5.1e-07 59.7 173 30.1
PGR042G1772 Punica granatum HOM05D000874 ORTHO05D001049 5.1e-07 59.7 225 28.9
unitig_899.g15103 Utricularia gibba HOM05D000874 ORTHO05D001049 5.1e-07 59.7 165 29.7
Ah.13g073700 Amaranthus hybridus HOM05D000874 ORTHO05D001049 6.6e-07 59.3 220 24.1
ECA232G1458 Erigeron canadensis HOM05D000874 ORTHO05D001049 6.6e-07 59.3 225 28.4
ECA232G4798 Erigeron canadensis HOM05D000874 ORTHO05D001049 6.6e-07 59.3 181 28.2
FvH4_6g17650 Fragaria vesca HOM05D000874 ORTHO05D001049 6.6e-07 59.3 169 26.0
PSO063G1181 Papaver somniferum HOM05D000874 ORTHO05D001049 6.6e-07 59.3 218 25.2
Aqoxy3G03673 Aquilegia oxysepala HOM05D000874 ORTHO05D001049 8.6e-07 58.9 182 27.5
MSTRG.23878 Avicennia marina HOM05D000874 ORTHO05D001049 8.6e-07 58.9 185 27.6
DCAR_011105 Daucus carota HOM05D000874 ORTHO05D001049 8.6e-07 58.9 219 27.9
Migut.H00613 Erythranthe guttata HOM05D000874 ORTHO05D001049 8.6e-07 58.9 274 25.5
Lalb_Chr20g0112271 Lupinus albus HOM05D000874 ORTHO05D001049 8.6e-07 58.9 201 26.9
Manes.09G060716 Manihot esculenta HOM05D000874 ORTHO05D001049 8.6e-07 58.9 206 25.2
PSO017G1675 Papaver somniferum HOM05D000874 ORTHO05D001049 8.6e-07 58.9 183 27.9
Potri.004G116400 Populus trichocarpa HOM05D000874 ORTHO05D001049 8.6e-07 58.9 183 26.2
BcaC04g23833 Brassica carinata HOM05D000874 ORTHO05D001049 1.1e-06 58.5 189 26.5
Cc00_g03500 Coffea canephora HOM05D000874 ORTHO05D001049 1.1e-06 58.5 177 28.2
EL10Ac3g06049 Beta vulgaris HOM05D000874 ORTHO05D001049 1.5e-06 58.2 184 26.6
ClCG07G016520 Citrullus lanatus HOM05D000874 ORTHO05D001049 1.5e-06 58.2 189 25.4
Pp3c11_15200 Physcomitrium patens HOM05D009770 ORTHO05D015178 1.5e-06 58.2 227 24.2
CAN.G93.56 Capsicum annuum HOM05D000874 ORTHO05D001049 1.9e-06 57.8 175 27.4
FAN02G0261 Fragaria x ananassa HOM05D000874 ORTHO05D001049 1.9e-06 57.8 154 28.6
Lsat_1_v5_gn_3_96140 Lactuca sativa HOM05D000874 ORTHO05D001049 1.9e-06 57.8 170 27.6
Duzib147G0129 Durio zibethinus HOM05D000874 ORTHO05D001049 2.5e-06 57.4 200 27.5
Lj1g0019370 Lotus japonicus HOM05D000874 ORTHO05D001049 2.5e-06 57.4 168 27.4
BcaB04g19518 Brassica carinata HOM05D000874 ORTHO05D001049 3.3e-06 57.0 182 26.4
AUR62038217 Chenopodium quinoa HOM05D000874 ORTHO05D001049 3.3e-06 57.0 180 27.2
SalBow1G1712 Salvia bowleyana HOM05D000874 ORTHO05D001049 3.3e-06 57.0 196 25.0
SGA_v2.0_scaffold4G02371 Striga asiatica HOM05D000874 ORTHO05D001049 3.3e-06 57.0 173 28.3
THA.LOC104823468 Tarenaya hassleriana HOM05D000874 ORTHO05D001049 3.3e-06 57.0 178 26.4
AUR62030089 Chenopodium quinoa HOM05D000874 ORTHO05D001049 4.3e-06 56.6 175 27.4
Oeu025532.3 Olea europaea HOM05D000874 ORTHO05D001049 4.3e-06 56.6 176 27.3
Pp3s52_80 Physcomitrium patens HOM05D009770 ORTHO05D015178 4.3e-06 56.6 246 25.2
Potri.010G244200 Populus trichocarpa HOM05D000874 ORTHO05D001049 4.3e-06 56.6 169 26.0
FvH4_6g18040 Fragaria vesca HOM05D000874 ORTHO05D001049 7.3e-06 55.8 198 25.3
HanXRQChr16g0522161 Helianthus annuus HOM05D000874 ORTHO05D001049 7.3e-06 55.8 179 27.4
Actinidia17590 Actinidia chinensis HOM05D000874 ORTHO05D001049 9.6e-06 55.5 199 26.6
Aa31LG2G3850 Aethionema arabicum HOM05D000874 ORTHO05D001049 9.6e-06 55.5 176 26.1
C09p04330 Brassica napus HOM05D000874 ORTHO05D001049 9.6e-06 55.5 179 26.3
BolC9t53365H Brassica oleracea HOM05D000874 ORTHO05D001049 9.6e-06 55.5 179 26.3
Os07g0109300 Oryza sativa ssp. japonica HOM05D000874 ORTHO05D001049 9.6e-06 55.5 133 30.8
Pp3c5_28230 Physcomitrium patens HOM05D009770 ORTHO05D015178 9.6e-06 55.5 249 25.7
Sed0009455 Sechium edule HOM05D000874 ORTHO05D001049 9.6e-06 55.5 185 25.9
unitig_0.g606 Utricularia gibba HOM05D000874 ORTHO05D001049 9.6e-06 55.5 192 28.6


User provided reference genes

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