Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 3.3e-186 654.8 318 100.0
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 1.8e-86 323.6 254 62.6
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 3.3e-85 319.3 325 52.6
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 5.6e-85 318.5 286 54.5
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 3.0e-78 296.2 317 49.8
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 4.3e-77 292.4 280 55.4
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.6e-76 290.4 318 49.7
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 1.1e-75 287.7 279 53.0
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 1.8e-75 287.0 317 49.5
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 6.9e-75 285.0 313 48.2
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 9.0e-75 284.6 317 48.9
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.5e-74 283.9 317 48.6
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 1.5e-74 283.9 319 50.2
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 2.0e-74 283.5 313 49.2
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 2.0e-74 283.5 279 51.6
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 2.6e-74 283.1 312 48.7
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 2.6e-74 283.1 299 50.2
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 3.4e-74 282.7 324 47.5
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 3.4e-74 282.7 315 48.3
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 4.5e-74 282.3 277 52.7
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 1.3e-73 280.8 280 52.5
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 2.2e-73 280.0 277 52.0
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 2.2e-73 280.0 266 54.5
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 2.9e-73 279.6 276 52.2
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 2.9e-73 279.6 314 48.4
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 6.5e-73 278.5 312 47.8
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 8.5e-73 278.1 229 59.4
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 1.9e-72 276.9 313 47.9
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 2.5e-72 276.6 276 52.5
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 2.5e-72 276.6 321 48.3
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 3.2e-72 276.2 277 50.9
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 4.2e-72 275.8 277 51.6
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 4.2e-72 275.8 315 47.9
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 5.5e-72 275.4 238 57.6
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 5.5e-72 275.4 314 47.1
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 7.2e-72 275.0 276 51.4
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 1.6e-71 273.9 281 50.5
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 2.1e-71 273.5 283 50.9
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 2.7e-71 273.1 278 52.5
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 3.6e-71 272.7 271 51.3
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 4.6e-71 272.3 274 50.4
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 6.1e-71 271.9 274 49.3
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 7.9e-71 271.6 292 50.0
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.0e-70 271.2 272 51.5
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 1.4e-70 270.8 325 46.8
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.4e-70 270.8 265 52.1
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 1.8e-70 270.4 326 46.6
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 3.9e-70 269.2 281 50.2
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 3.9e-70 269.2 318 47.5
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 3.9e-70 269.2 272 50.4
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 5.1e-70 268.9 278 50.4
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 5.1e-70 268.9 321 47.7
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 5.1e-70 268.9 271 51.3
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 6.7e-70 268.5 277 49.5
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 8.8e-70 268.1 315 47.6
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 1.1e-69 267.7 276 50.0
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 1.5e-69 267.3 234 55.6
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 2.0e-69 266.9 251 53.4
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 2.0e-69 266.9 268 52.2
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 2.0e-69 266.9 324 46.9
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 2.5e-69 266.5 273 49.5
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 2.5e-69 266.5 272 50.4
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 2.5e-69 266.5 281 49.8
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 3.3e-69 266.2 279 49.5
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 3.3e-69 266.2 325 47.7
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 4.3e-69 265.8 281 49.5
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 4.3e-69 265.8 277 49.5
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 7.4e-69 265.0 284 50.7
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 9.7e-69 264.6 321 45.8
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 9.7e-69 264.6 249 53.4
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 9.7e-69 264.6 278 50.4
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 9.7e-69 264.6 278 50.4
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 1.3e-68 264.2 285 49.5
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 2.2e-68 263.5 281 48.8
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 2.2e-68 263.5 281 49.8
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 4.8e-68 262.3 278 50.0
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 8.2e-68 261.5 314 47.1
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.4e-67 260.8 276 48.6
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 1.8e-67 260.4 281 48.8
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 3.1e-67 259.6 287 50.5
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 2.0e-66 256.9 316 44.9
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 2.6e-66 256.5 268 51.1
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 2.9e-65 253.1 288 47.9
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 3.8e-65 252.7 232 53.9
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 6.5e-65 251.9 325 45.8
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 2.5e-64 250.0 269 49.4
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 1.4e-62 244.2 235 54.5
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.8e-62 243.8 270 48.1
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 2.3e-62 243.4 238 48.3
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 3.0e-62 243.0 245 50.6
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 2.6e-61 240.0 240 50.8
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 9.7e-61 238.0 367 40.1
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 4.8e-60 235.7 246 49.6
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 1.4e-59 234.2 236 52.1
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 8.8e-54 214.9 246 48.0
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 2.6e-53 213.4 250 45.6
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 5.7e-53 212.2 167 59.9
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 2.4e-51 206.8 217 48.4
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 5.3e-51 205.7 289 41.9
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.2e-50 204.5 312 39.7
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 1.0e-49 201.4 253 45.8
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 2.2e-49 200.3 280 40.7
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 1.1e-48 198.0 220 48.6
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 3.6e-47 193.0 158 57.6
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 6.1e-47 192.2 192 49.0
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 9.7e-45 184.9 329 36.8
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 2.8e-44 183.3 159 56.6
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 1.2e-42 177.9 169 53.3
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 2.0e-42 177.2 236 44.5
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 3.8e-41 172.9 410 30.5
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 6.5e-41 172.2 232 42.7
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 8.0e-39 165.2 315 37.5
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.2e-37 161.4 173 51.4
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 9.8e-37 158.3 128 59.4
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 4.8e-36 156.0 129 57.4
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 2.4e-35 153.7 222 41.0
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 2.7e-34 150.2 172 45.3
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.2e-26 124.8 240 33.3
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 1.9e-24 117.5 105 57.1
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.6e-23 114.4 99 51.5
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 9.8e-21 105.1 149 40.3
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 1.9e-19 100.9 100 50.0
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.6e-15 87.8 124 39.5
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 2.8e-15 87.0 75 57.3
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 1.4e-11 74.7 66 48.5
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 7.3e-08 62.4 38 71.1
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 1.2e-07 61.6 62 51.6
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 1.2e-07 61.6 49 59.2
MCO01G569 Micromonas commoda HOM05D005657 ORTHO05D007104 8.1e-07 58.9 43 60.5
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 8.1e-07 58.9 58 44.8
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 1.4e-06 58.2 31 80.6
Cfa025678 Carpinus fangiana HOM05D005657 ORTHO05D122708 2.3e-06 57.4 159 33.3
SGA_v2.0_scaffold118G32549 Striga asiatica HOM05D005657 ORTHO05D007104 6.8e-06 55.8 39 69.2


User provided reference genes

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