Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0156s0022 Marchantia polymorpha HOM05D003697 ORTHO05D005452 0.0e+00 3251.1 1644 100.0
Pp3c3_14060 Physcomitrium patens HOM05D003697 ORTHO05D005452 0.0e+00 1937.2 1651 60.3
AagrBONN_evm.TU.Sc2ySwM_362.2359 Anthoceros agrestis HOM05D003697 ORTHO05D005452 0.0e+00 1763.0 1467 60.2
SEGI_03237 Sequoiadendron giganteum HOM05D003697 ORTHO05D005452 0.0e+00 1746.5 1605 56.0
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1693.7 1663 53.6
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 0.0e+00 1692.6 1647 54.4
SMO276G0030 Selaginella moellendorffii HOM05D003697 ORTHO05D005452 0.0e+00 1692.6 1676 54.4
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 0.0e+00 1691.4 1671 53.0
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1689.5 1659 53.3
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 0.0e+00 1689.5 1672 52.9
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 0.0e+00 1687.2 1630 54.1
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 0.0e+00 1686.0 1684 53.3
Potri.003G018900 Populus trichocarpa HOM05D003697 ORTHO05D005452 0.0e+00 1682.9 1622 54.1
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 0.0e+00 1682.2 1668 53.4
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 0.0e+00 1679.5 1613 54.0
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 0.0e+00 1678.7 1660 53.6
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 0.0e+00 1677.9 1655 53.7
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1676.8 1662 53.9
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 0.0e+00 1674.8 1648 54.0
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 0.0e+00 1674.8 1646 53.8
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 0.0e+00 1674.4 1655 53.8
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 0.0e+00 1671.4 1662 54.0
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 0.0e+00 1671.4 1691 52.3
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 0.0e+00 1668.7 1664 53.1
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 0.0e+00 1668.3 1658 53.0
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 1666.4 1657 53.5
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 0.0e+00 1666.0 1673 52.6
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 0.0e+00 1665.6 1655 53.5
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1664.0 1658 53.1
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 1664.0 1654 53.7
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 0.0e+00 1663.7 1625 53.9
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 0.0e+00 1660.2 1666 52.8
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 0.0e+00 1658.3 1675 52.5
Nn1g08409 Nelumbo nucifera HOM05D003697 ORTHO05D005452 0.0e+00 1658.3 1656 52.1
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1657.9 1616 54.2
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 0.0e+00 1657.1 1669 52.8
ECA240G1790 Erigeron canadensis HOM05D003697 ORTHO05D005452 0.0e+00 1656.3 1660 53.0
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 0.0e+00 1655.6 1667 53.0
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 0.0e+00 1651.0 1662 53.5
HPP92_015204 Vanilla planifolia HOM05D003697 ORTHO05D005452 0.0e+00 1651.0 1631 53.2
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1650.2 1663 53.2
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 0.0e+00 1648.6 1656 51.9
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 0.0e+00 1646.3 1671 53.0
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 0.0e+00 1643.6 1764 50.3
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 0.0e+00 1642.5 1654 52.8
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 0.0e+00 1642.1 1668 52.8
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 0.0e+00 1634.8 1663 52.0
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 0.0e+00 1634.8 1605 53.3
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 0.0e+00 1634.0 1620 52.9
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1634.0 1633 53.1
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 0.0e+00 1633.6 1651 52.6
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 0.0e+00 1633.6 1642 52.4
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 0.0e+00 1631.7 1648 52.8
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 0.0e+00 1631.7 1642 52.3
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 0.0e+00 1631.7 1741 51.0
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 0.0e+00 1631.3 1671 51.8
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 0.0e+00 1629.8 1655 52.6
Sed0005890 Sechium edule HOM05D003697 ORTHO05D005452 0.0e+00 1629.0 1675 52.7
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1628.6 1724 51.2
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 0.0e+00 1628.2 1654 52.6
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 0.0e+00 1627.8 1658 52.6
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 0.0e+00 1623.2 1670 52.2
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 0.0e+00 1622.1 1667 52.2
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 0.0e+00 1622.1 1687 51.2
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 0.0e+00 1619.4 1657 52.4
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 0.0e+00 1619.0 1658 52.7
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 0.0e+00 1617.8 1660 52.3
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 0.0e+00 1607.8 1652 52.3
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 0.0e+00 1607.0 1647 52.3
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 0.0e+00 1607.0 1657 52.0
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1606.3 1659 51.4
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 0.0e+00 1604.7 1816 49.3
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 0.0e+00 1604.3 1629 51.8
Lsat_1_v5_gn_9_118481 Lactuca sativa HOM05D003697 ORTHO05D005452 0.0e+00 1604.0 1611 52.2
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 0.0e+00 1602.8 1672 52.0
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1602.8 1658 51.9
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 0.0e+00 1601.6 1621 52.8
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 0.0e+00 1600.5 1650 52.0
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 0.0e+00 1592.4 1663 52.2
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 0.0e+00 1590.5 1662 52.3
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 0.0e+00 1588.5 1656 51.3
Zm00001eb258320 Zea mays HOM05D003697 ORTHO05D005452 0.0e+00 1587.4 1612 52.3
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 0.0e+00 1584.7 1670 51.6
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1577.4 1661 51.2
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 0.0e+00 1576.2 1652 51.3
DCAR_006698 Daucus carota HOM05D003697 ORTHO05D005452 0.0e+00 1543.1 1641 50.0
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 0.0e+00 1536.2 1669 50.1
Sc02g0002740 Simmondsia chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1528.5 1547 52.0
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 0.0e+00 1522.3 1730 49.0
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 0.0e+00 1521.9 1857 47.0
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 0.0e+00 1496.9 1656 49.5
CBR_g48619 Chara braunii HOM05D003697 ORTHO05D005452 0.0e+00 1471.1 1705 48.2
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 0.0e+00 1459.9 1679 48.1
FAN13G2190 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1453.0 1690 47.9
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 0.0e+00 1450.6 1674 47.4
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 0.0e+00 1446.0 1334 56.1
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 0.0e+00 1426.4 1376 55.3
Ah.04g162670 Amaranthus hybridus HOM05D003697 ORTHO05D005452 0.0e+00 1417.5 1655 47.7
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 0.0e+00 1362.1 1644 46.5
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 0.0e+00 1302.3 1667 45.1
ECA233G0288 Erigeron canadensis HOM05D003697 ORTHO05D005452 0.0e+00 1164.8 1619 43.4
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 0.0e+00 1156.4 1118 54.4
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 0.0e+00 1124.8 1078 54.2
Gorai.008G028000 Gossypium raimondii HOM05D003697 ORTHO05D005452 0.0e+00 1121.3 1296 48.1
unitig_749.g14126 Utricularia gibba HOM05D003697 ORTHO05D005452 0.0e+00 1082.0 1506 42.2
Dinv19381 Davidia involucrata HOM05D003697 ORTHO05D005452 2.0e-258 897.1 962 50.5
PRCOL_00004479 Prasinoderma coloniale HOM05D003697 ORTHO05D005452 4.7e-252 875.9 1669 36.3
ClCG05G009590 Citrullus lanatus HOM05D003697 ORTHO05D005452 3.1e-251 873.2 720 61.4
CAN.G798.13 Capsicum annuum HOM05D003697 ORTHO05D005452 2.3e-246 857.1 630 67.6
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 8.4e-225 785.4 1069 44.2
Psat1g220480 Pisum sativum HOM05D003697 ORTHO05D005452 1.6e-220 771.2 553 69.3
MCO01G725 Micromonas commoda HOM05D003697 ORTHO05D005452 4.3e-213 746.5 1753 32.2
CAN.G798.12 Capsicum annuum HOM05D003697 ORTHO05D005452 2.2e-209 734.2 1223 37.3
ClCG05G009570 Citrullus lanatus HOM05D003697 ORTHO05D005452 4.2e-208 729.9 930 45.3
SHI16668 Sapria himalayana HOM05D003697 ORTHO05D005452 3.3e-189 667.2 974 41.2
Cfa024915 Carpinus fangiana HOM05D003697 ORTHO05D005452 1.1e-179 635.6 1622 30.9
BcaB03g14881 Brassica carinata HOM05D003697 ORTHO05D005452 2.4e-179 634.4 874 42.0
Psat1g220520 Pisum sativum HOM05D003697 ORTHO05D005452 3.3e-160 570.9 736 43.5
Gorai.008G027900 Gossypium raimondii HOM05D003697 ORTHO05D005452 4.4e-149 533.9 321 78.5
Psat7g198520 Pisum sativum HOM05D003697 ORTHO05D005452 1.7e-145 521.9 752 39.8
Os02g0664100 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 2.1e-138 498.4 528 49.8
Actinidia06460 Actinidia chinensis HOM05D003697 ORTHO05D005452 3.5e-138 497.7 284 81.7
Lj5A253T35 Lonicera japonica HOM05D003697 ORTHO05D005452 8.6e-137 493.0 597 45.6
Gohir.D12G027400 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.9e-136 491.9 298 77.2
Cc02_g22690 Coffea canephora HOM05D003697 ORTHO05D005452 4.7e-135 487.3 533 47.5
Cre05.g233303 Chlamydomonas reinhardtii HOM05D003697 ORTHO05D005452 4.0e-134 484.2 1795 26.6
Eucgr.H01580 Eucalyptus grandis HOM05D003697 ORTHO05D005452 2.7e-130 471.5 314 73.2
Duzib132G0461 Durio zibethinus HOM05D003697 ORTHO05D005452 2.9e-116 424.9 265 75.5
Atru.chr6.584 Acer truncatum HOM05D003697 ORTHO05D005452 8.4e-116 423.3 1587 25.6
Os02g0664200 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 3.5e-114 417.9 242 81.0
Eucgr.H01552 Eucalyptus grandis HOM05D003697 ORTHO05D005452 2.5e-99 368.6 265 68.7
Cpa.g.sc30.4 Carica papaya HOM05D003697 ORTHO05D005452 9.4e-83 313.5 547 36.6
Lalb_Chr20g0123551 Lupinus albus HOM05D003697 ORTHO05D005452 3.0e-81 308.5 303 50.5
Gohir.D12G027466 Gossypium hirsutum HOM05D003697 ORTHO05D005452 9.1e-78 297.0 258 58.1
Psat7g240960 Pisum sativum HOM05D003697 ORTHO05D005452 3.6e-66 258.5 221 62.4
Duzib132G0509 Durio zibethinus HOM05D003697 ORTHO05D005452 2.0e-64 252.7 322 44.7
Cpa.g.sc30.3 Carica papaya HOM05D003697 ORTHO05D005452 5.7e-64 251.1 319 43.6
Gohir.D12G027532 Gossypium hirsutum HOM05D003697 ORTHO05D005452 3.5e-61 241.9 218 52.3
Psat5g210320 Pisum sativum HOM05D003697 ORTHO05D005452 1.6e-45 189.9 103 85.4
Psat7g199600 Pisum sativum HOM05D003697 ORTHO05D023078 2.2e-39 169.5 315 36.8
Psat5g210280 Pisum sativum HOM05D003697 ORTHO05D005452 1.4e-38 166.8 85 88.2
FAN13G1565 Fragaria x ananassa HOM05D003697 ORTHO05D024366 8.6e-36 157.5 118 67.8
Lj6g0025593 Lotus japonicus HOM05D003697 ORTHO05D024366 1.2e-34 153.7 118 66.1
Psat5g083120 Pisum sativum HOM05D003697 ORTHO05D002190 4.0e-33 148.7 180 45.6
Cpa.g.sc30.5 Carica papaya HOM05D003697 ORTHO05D005452 6.4e-31 141.4 118 58.5
Psat0s1016g0040 Pisum sativum HOM05D003697 ORTHO05D005452 1.2e-29 137.1 87 72.4
Psat0s3298g0040 Pisum sativum HOM05D003697 ORTHO05D005452 8.6e-28 131.0 87 70.1
Psat7g198480 Pisum sativum HOM05D003697 ORTHO05D005452 2.5e-27 129.4 142 45.8
C06p46180 Brassica napus HOM05D003697 ORTHO05D033244 5.6e-27 128.3 152 45.4
C06p46230 Brassica napus HOM05D003697 ORTHO05D033244 5.6e-27 128.3 152 45.4
unitig_749.g14125 Utricularia gibba HOM05D003697 ORTHO05D005452 2.1e-26 126.3 67 82.1
Psat3g186600 Pisum sativum HOM05D003697 ORTHO05D005452 3.8e-23 115.5 60 83.3
Psat0s5727g0040 Pisum sativum HOM05D003697 ORTHO05D033244 1.4e-22 113.6 114 48.2
Psat1g065720 Pisum sativum HOM05D003697 ORTHO05D002190 2.4e-22 112.8 129 45.0
BraA07t30719Z Brassica rapa HOM05D003697 ORTHO05D005452 3.2e-22 112.5 76 69.7
A07p30820 Brassica napus HOM05D003697 ORTHO05D005452 3.0e-20 105.9 54 81.5
Psat4g083840 Pisum sativum HOM05D003697 ORTHO05D014541 5.6e-19 101.7 139 38.1
Duzib132G0723 Durio zibethinus HOM05D003697 ORTHO05D005452 1.2e-16 94.0 121 42.1
Psat6g132920 Pisum sativum HOM05D003697 ORTHO05D005452 1.5e-16 93.6 66 63.6
Psat0s4378g0040 Pisum sativum HOM05D012210 ORTHO05D005452 1.3e-15 90.5 57 71.9
Psat0s625g0080 Pisum sativum HOM05D001068 ORTHO05D002190 2.9e-15 89.4 114 44.7
Psat1g073840 Pisum sativum HOM05D012210 ORTHO05D005452 4.9e-15 88.6 48 79.2
Psat3g096360 Pisum sativum HOM05D003697 ORTHO05D323777 8.1e-10 71.2 36 80.6
Actinidia06459 Actinidia chinensis HOM05D003697 ORTHO05D003490 3.1e-09 69.3 120 35.0
VMungo0251G1240 Vigna mungo HOM05D000087 ORTHO05D012327 4.0e-09 68.9 56 58.9
Psat1g055240 Pisum sativum HOM05D003697 ORTHO05D023078 1.3e-07 63.9 164 30.5
Psat5g201760 Pisum sativum HOM05D003697 ORTHO05D023078 2.2e-07 63.2 157 29.9
Psat1g072720 Pisum sativum HOM05D003697 ORTHO05D005452 3.8e-07 62.4 31 80.6
Psat6g235600 Pisum sativum HOM05D012210 ORTHO05D005452 3.8e-07 62.4 31 80.6
Psat5g078760 Pisum sativum HOM05D002636 ORTHO05D003490 4.9e-07 62.0 109 32.1
Medtr1g089820 Medicago truncatula HOM05D000488 ORTHO05D000347 1.9e-06 60.1 195 28.7
TPR.G13304 Trifolium pratense HOM05D000488 ORTHO05D000347 1.9e-06 60.1 184 27.7
Lalb_Chr20g0123541 Lupinus albus HOM05D003697 ORTHO05D005452 7.1e-06 58.2 60 43.3
arahy.Tifrunner.gnm1.ann1.HC7Y8U Arachis hypogaea HOM05D000488 ORTHO05D000347 9.3e-06 57.8 193 26.4
arahy.Tifrunner.gnm1.ann1.I3B6LB Arachis hypogaea HOM05D000488 ORTHO05D000347 9.3e-06 57.8 193 26.4
Duzib151G0826 Durio zibethinus HOM05D000488 ORTHO05D000347 9.3e-06 57.8 175 25.7


User provided reference genes

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