Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 3.0e-43 177.9 81 100.0
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 6.8e-27 123.6 81 66.7
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 6.8e-27 123.6 81 67.9
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 2.0e-26 122.1 80 67.5
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 9.2e-24 113.2 73 69.9
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 9.2e-24 113.2 83 63.9
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 5.9e-23 110.5 83 61.4
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 7.8e-23 110.2 82 63.4
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 1.7e-22 109.0 83 63.9
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 1.7e-22 109.0 83 63.9
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 2.3e-22 108.6 83 63.9
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 3.9e-22 107.8 83 60.2
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 5.0e-22 107.5 64 73.4
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 5.0e-22 107.5 64 73.4
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 6.6e-22 107.1 83 61.4
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 6.6e-22 107.1 83 61.4
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 6.6e-22 107.1 83 61.4
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 8.6e-22 106.7 82 61.0
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 8.6e-22 106.7 84 61.9
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 8.6e-22 106.7 82 61.0
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 1.1e-21 106.3 78 65.4
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 1.5e-21 105.9 80 62.5
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 1.5e-21 105.9 76 65.8
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 1.5e-21 105.9 76 65.8
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 1.5e-21 105.9 82 61.0
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.9e-21 105.5 82 63.4
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.9e-21 105.5 82 63.4
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.9e-21 105.5 82 63.4
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 2.5e-21 105.1 76 65.8
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 2.5e-21 105.1 81 61.7
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 2.5e-21 105.1 82 61.0
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 2.5e-21 105.1 84 60.7
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 2.5e-21 105.1 82 61.0
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 3.3e-21 104.8 74 63.5
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 3.3e-21 104.8 82 59.8
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 3.3e-21 104.8 82 59.8
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 3.3e-21 104.8 82 59.8
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 3.3e-21 104.8 82 61.0
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 3.3e-21 104.8 82 62.2
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 4.3e-21 104.4 85 58.8
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 4.3e-21 104.4 81 61.7
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 4.3e-21 104.4 76 63.2
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 4.3e-21 104.4 76 63.2
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 4.3e-21 104.4 86 61.6
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 4.3e-21 104.4 83 60.2
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 4.3e-21 104.4 78 62.8
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 4.3e-21 104.4 74 63.5
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 5.6e-21 104.0 85 58.8
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 5.6e-21 104.0 85 58.8
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 5.6e-21 104.0 75 64.0
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 5.6e-21 104.0 75 64.0
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 5.6e-21 104.0 75 64.0
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 5.6e-21 104.0 75 64.0
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 5.6e-21 104.0 75 64.0
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 7.3e-21 103.6 75 65.3
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 7.3e-21 103.6 82 59.8
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 7.3e-21 103.6 86 61.6
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 7.3e-21 103.6 83 59.0
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 7.3e-21 103.6 83 60.2
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 7.3e-21 103.6 64 71.9
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 7.3e-21 103.6 62 72.6
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 7.3e-21 103.6 62 72.6
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 9.5e-21 103.2 85 57.6
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 9.5e-21 103.2 85 61.2
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 9.5e-21 103.2 61 73.8
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 1.2e-20 102.8 64 68.8
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 1.2e-20 102.8 86 58.1
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 1.2e-20 102.8 83 59.0
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 1.2e-20 102.8 78 62.8
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 1.2e-20 102.8 61 73.8
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 1.2e-20 102.8 86 59.3
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 1.6e-20 102.4 82 59.8
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 1.6e-20 102.4 78 57.7
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 2.1e-20 102.1 83 59.0
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.1e-20 102.1 82 58.5
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 2.1e-20 102.1 85 60.0
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 2.1e-20 102.1 63 71.4
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 2.8e-20 101.7 74 60.8
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 2.8e-20 101.7 74 60.8
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 2.8e-20 101.7 60 73.3
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 2.8e-20 101.7 85 60.0
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 2.8e-20 101.7 83 59.0
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 2.8e-20 101.7 64 67.2
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 2.8e-20 101.7 80 60.0
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 2.8e-20 101.7 80 60.0
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 2.8e-20 101.7 77 62.3
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 3.6e-20 101.3 80 57.5
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 3.6e-20 101.3 78 59.0
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 3.6e-20 101.3 80 57.5
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 3.6e-20 101.3 80 57.5
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 3.6e-20 101.3 80 57.5
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 3.6e-20 101.3 83 59.0
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 4.7e-20 100.9 80 57.5
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 4.7e-20 100.9 80 57.5
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 4.7e-20 100.9 80 57.5
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 4.7e-20 100.9 82 58.5
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 4.7e-20 100.9 80 57.5
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 4.7e-20 100.9 80 57.5
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 4.7e-20 100.9 80 57.5
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 4.7e-20 100.9 84 58.3
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 6.2e-20 100.5 80 57.5
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 8.0e-20 100.1 76 60.5
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 8.0e-20 100.1 83 59.0
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 8.0e-20 100.1 80 57.5
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 8.0e-20 100.1 80 57.5
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 8.0e-20 100.1 80 57.5
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 8.0e-20 100.1 76 59.2
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 8.0e-20 100.1 76 59.2
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 1.1e-19 99.8 80 57.5
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 1.1e-19 99.8 84 57.1
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 1.4e-19 99.4 80 58.8
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 1.4e-19 99.4 80 58.8
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 1.4e-19 99.4 80 58.8
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 1.4e-19 99.4 80 58.8
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 1.4e-19 99.4 80 58.8
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 1.4e-19 99.4 84 58.3
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 1.4e-19 99.4 80 58.8
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 1.8e-19 99.0 84 57.1
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 1.8e-19 99.0 84 57.1
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 1.8e-19 99.0 80 56.2
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 1.8e-19 99.0 84 57.1
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 1.8e-19 99.0 84 58.3
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 1.8e-19 99.0 80 56.2
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 2.3e-19 98.6 74 59.5
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 3.1e-19 98.2 85 57.6
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 4.0e-19 97.8 85 57.6
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 4.0e-19 97.8 81 56.8
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 5.2e-19 97.4 80 55.0
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 3.4e-18 94.7 57 70.2
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 4.4e-18 94.4 50 80.0
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 7.5e-18 93.6 74 60.8
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 9.8e-18 93.2 56 69.6
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 9.8e-18 93.2 96 50.0
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 2.9e-17 91.7 102 47.1
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 1.9e-16 89.0 50 74.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 3.2e-16 88.2 50 74.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 1.2e-15 86.3 50 72.0
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 2.7e-15 85.1 74 52.7
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 7.8e-15 83.6 49 69.4
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 3.9e-14 81.3 56 66.1
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 8.6e-14 80.1 63 52.4
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 5.4e-08 60.8 59 50.8


User provided reference genes

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