Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0153s0022 Marchantia polymorpha HOM05D002553 ORTHO05D002767 3.7e-227 791.2 398 100.0
Pp3c27_4830 Physcomitrium patens HOM05D002553 ORTHO05D002767 2.3e-83 313.5 392 45.2
PSO210G0829 Papaver somniferum HOM05D002553 ORTHO05D002767 1.2e-60 238.0 415 34.5
PSO832G1112 Papaver somniferum HOM05D002553 ORTHO05D002767 7.9e-60 235.3 413 34.1
Pp3c6_24550 Physcomitrium patens HOM05D002553 ORTHO05D002767 3.0e-59 233.4 352 40.1
Atru.chr2.474 Acer truncatum HOM05D002553 ORTHO05D002767 1.6e-57 227.6 394 36.0
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 2.1e-57 227.3 386 35.5
Nitab4.5_0001510g0020 Nicotiana tabacum HOM05D002553 ORTHO05D002767 2.1e-57 227.3 423 37.1
Aqoxy1G02454 Aquilegia oxysepala HOM05D002553 ORTHO05D002767 2.8e-57 226.9 412 35.2
TWI56G0412 Tripterygium wilfordii HOM05D002553 ORTHO05D002767 5.3e-56 222.6 391 34.0
Sopen10g005180 Solanum pennellii HOM05D002553 ORTHO05D002767 6.9e-56 222.2 396 36.6
Potri.005G039000 Populus trichocarpa HOM05D002553 ORTHO05D002767 2.6e-55 220.3 419 33.4
Solyc10g009400.3 Solanum lycopersicum HOM05D002553 ORTHO05D002767 7.6e-55 218.8 395 35.7
Thecc.05G308100 Theobroma cacao HOM05D002553 ORTHO05D002767 1.0e-54 218.4 413 34.9
Lj1g0019778 Lotus japonicus HOM05D002553 ORTHO05D002767 1.3e-54 218.0 398 35.4
ATR0626G345 Amborella trichopoda HOM05D002553 ORTHO05D002767 2.2e-54 217.2 435 34.0
Lalb_Chr15g0077101 Lupinus albus HOM05D002553 ORTHO05D002767 4.9e-54 216.1 395 35.2
GSVIVG01000009001 Vitis vinifera HOM05D002553 ORTHO05D002767 4.9e-54 216.1 393 34.9
PGR031G3980 Punica granatum HOM05D002553 ORTHO05D002767 6.5e-54 215.7 385 34.0
Nitab4.5_0000176g0030 Nicotiana tabacum HOM05D002553 ORTHO05D002767 1.1e-53 214.9 405 35.1
THA.LOC104818678 Tarenaya hassleriana HOM05D002553 ORTHO05D002767 1.4e-53 214.5 389 33.9
CDE08G1662 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 2.5e-53 213.8 394 35.5
Gorai.004G243500 Gossypium raimondii HOM05D002553 ORTHO05D002767 2.5e-53 213.8 412 35.0
Psat3g010200 Pisum sativum HOM05D002553 ORTHO05D002767 5.5e-53 212.6 389 34.2
Manes.09G163850 Manihot esculenta HOM05D002553 ORTHO05D002767 9.3e-53 211.8 427 32.8
CSS0035336 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 1.2e-52 211.5 402 34.8
Gohir.D08G229300 Gossypium hirsutum HOM05D002553 ORTHO05D002767 2.7e-52 210.3 408 35.0
Cc02_g32700 Coffea canephora HOM05D002553 ORTHO05D002767 3.5e-52 209.9 406 35.2
RcHm_v2.0_Chr3g0454111 Rosa chinensis HOM05D002553 ORTHO05D002767 3.5e-52 209.9 406 33.5
MSTRG.16234 Avicennia marina HOM05D002553 ORTHO05D002767 1.3e-51 208.0 398 35.4
MD04G1209100 Malus domestica HOM05D002553 ORTHO05D002767 2.3e-51 207.2 399 34.1
Duzib177G0165 Durio zibethinus HOM05D002553 ORTHO05D002767 3.0e-51 206.8 411 34.1
HanXRQChr14g0445961 Helianthus annuus HOM05D002553 ORTHO05D002767 3.9e-51 206.5 394 33.8
SMO307G0066 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 6.7e-51 205.7 383 36.6
FAN05G5165 Fragaria x ananassa HOM05D002553 ORTHO05D002767 8.7e-51 205.3 407 32.4
Carub.0006s2514 Capsella rubella HOM05D002553 ORTHO05D002767 1.9e-50 204.1 385 34.0
FAN05G4192 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.9e-50 204.1 407 32.2
Glyma.19G237200 Glycine max HOM05D002553 ORTHO05D002767 1.9e-50 204.1 400 34.2
Phvul.006G093922 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 1.9e-50 204.1 399 34.6
Ca_09373_v3 Cicer arietinum L. HOM05D002553 ORTHO05D002767 3.3e-50 203.4 404 34.9
FvH4_6g05341 Fragaria vesca HOM05D002553 ORTHO05D002767 3.3e-50 203.4 411 31.6
BcaNung02464 Brassica carinata HOM05D002553 ORTHO05D002767 4.3e-50 203.0 395 33.9
CiPaw.07G014700 Carya illinoinensis HOM05D002553 ORTHO05D002767 4.3e-50 203.0 421 33.3
ECA238G2267 Erigeron canadensis HOM05D002553 ORTHO05D002767 4.3e-50 203.0 395 33.2
AL6G39610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 5.7e-50 202.6 391 35.0
BcaNung04367 Brassica carinata HOM05D002553 ORTHO05D002767 5.7e-50 202.6 395 34.2
Migut.M00920 Erythranthe guttata HOM05D002553 ORTHO05D002767 5.7e-50 202.6 391 33.8
Aa31LG11G9180 Aethionema arabicum HOM05D002553 ORTHO05D002767 9.6e-50 201.8 384 34.9
CANSAT25G3036 Cannabis sativa HOM05D002553 ORTHO05D002767 2.1e-49 200.7 386 34.2
VMungo0540G2049 Vigna mungo HOM05D002553 ORTHO05D002767 2.8e-49 200.3 394 34.0
Haze_04234 Corylus avellana HOM05D002553 ORTHO05D002767 4.8e-49 199.5 400 34.2
Medtr7g113850 Medicago truncatula HOM05D002553 ORTHO05D002767 4.8e-49 199.5 390 33.8
FAN02G2444 Fragaria x ananassa HOM05D002553 ORTHO05D002767 6.3e-49 199.1 417 31.2
arahy.Tifrunner.gnm1.ann1.NG2XET Arachis hypogaea HOM05D002553 ORTHO05D002767 1.1e-48 198.4 387 34.4
C07p40730 Brassica napus HOM05D002553 ORTHO05D002767 1.8e-48 197.6 396 34.1
Cfa006549 Carpinus fangiana HOM05D002553 ORTHO05D002767 1.8e-48 197.6 401 33.9
MBI17_g29610_MAGBIO Magnolia biondii HOM05D002553 ORTHO05D002767 1.8e-48 197.6 397 31.5
BolC7t44601H Brassica oleracea HOM05D002553 ORTHO05D002767 3.1e-48 196.8 393 34.1
HPP92_017205 Vanilla planifolia HOM05D002553 ORTHO05D002767 4.1e-48 196.4 395 32.4
AUR62000868 Chenopodium quinoa HOM05D002553 ORTHO05D002767 5.3e-48 196.1 413 32.2
Rhsim05G0144400 Rhododendron simsii HOM05D002553 ORTHO05D002767 6.9e-48 195.7 409 33.7
AT5G27400 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 1.5e-47 194.5 385 33.8
Phvul.006G093933 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 2.6e-47 193.7 398 33.2
COL.COLO4_13516 Corchorus olitorius HOM05D002553 ORTHO05D002767 3.4e-47 193.4 348 35.1
Sp2g20630 Schrenkiella parvula HOM05D002553 ORTHO05D002767 1.3e-46 191.4 397 33.8
Actinidia19805 Actinidia chinensis HOM05D002553 ORTHO05D002767 1.7e-46 191.0 400 33.8
CARHR186000 Cardamine hirsuta HOM05D002553 ORTHO05D002767 2.2e-46 190.7 388 32.0
A06p37580 Brassica napus HOM05D002553 ORTHO05D002767 5.0e-46 189.5 393 33.8
BraA06t26677Z Brassica rapa HOM05D002553 ORTHO05D002767 5.0e-46 189.5 393 33.8
Thhalv10003627m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 5.0e-46 189.5 375 34.4
FAN14G0929 Fragaria x ananassa HOM05D002553 ORTHO05D002767 8.4e-46 188.7 398 30.4
Zm00001eb417780 Zea mays HOM05D002553 ORTHO05D002767 8.4e-46 188.7 396 31.8
QL03p004484 Quercus lobata HOM05D002553 ORTHO05D002767 1.1e-45 188.3 458 31.4
Prupe.6G330100 Prunus persica HOM05D002553 ORTHO05D002767 1.4e-45 188.0 352 34.9
arahy.Tifrunner.gnm1.ann1.Y4B2Z0 Arachis hypogaea HOM05D002553 ORTHO05D002767 2.5e-45 187.2 405 32.6
TPR.G33193 Trifolium pratense HOM05D002553 ORTHO05D002767 2.5e-45 187.2 378 34.4
DCAR_029434 Daucus carota HOM05D002553 ORTHO05D002767 1.6e-44 184.5 408 31.1
TAR633G1107 Trochodendron aralioides HOM05D002553 ORTHO05D002767 1.6e-44 184.5 380 31.6
AT5G27410 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 3.5e-44 183.3 364 34.1
SGA_v2.0_scaffold1G00162 Striga asiatica HOM05D002553 ORTHO05D002767 4.6e-44 183.0 393 32.8
ClCG02G016020 Citrullus lanatus HOM05D002553 ORTHO05D002767 1.8e-43 181.0 399 31.1
Gohir.A08G212300 Gossypium hirsutum HOM05D002553 ORTHO05D002767 5.1e-43 179.5 312 37.2
Sc09g0003350 Simmondsia chinensis HOM05D002553 ORTHO05D002767 6.7e-43 179.1 393 32.3
Lsat_1_v5_gn_2_67941 Lactuca sativa HOM05D002553 ORTHO05D002767 2.5e-42 177.2 383 32.4
Cpa.g.sc48.13 Carica papaya HOM05D002553 ORTHO05D002767 9.7e-42 175.3 351 34.5
AUR62005108 Chenopodium quinoa HOM05D002553 ORTHO05D002767 6.3e-41 172.6 345 33.0
Hund07046 Selenicereus undatus HOM05D002553 ORTHO05D002767 1.4e-40 171.4 395 32.4
Hma1.2p1_0666F.1_g199460 Hydrangea macrophylla HOM05D002553 ORTHO05D002767 1.8e-40 171.0 283 37.1
Sabra05G0037600 Salix brachista HOM05D002553 ORTHO05D002767 2.0e-39 167.5 558 26.0
Dinv40259 Davidia involucrata HOM05D002553 ORTHO05D002767 5.9e-39 166.0 290 35.5
Peaxi162Scf01441g00005 Petunia axillaris HOM05D002553 ORTHO05D002767 5.5e-37 159.5 507 28.0
Nn1g02088 Nelumbo nucifera HOM05D002553 ORTHO05D002767 2.7e-36 157.1 408 29.4
Oeu057684.1 Olea europaea HOM05D002553 ORTHO05D002767 2.2e-33 147.5 391 30.7
Sed0024851 Sechium edule HOM05D002553 ORTHO05D002767 2.8e-33 147.1 267 34.8
Lj7C475G4 Lonicera japonica HOM05D002553 ORTHO05D002767 2.0e-31 141.0 386 29.3
AagrBONN_evm.TU.Sc2ySwM_368.1399 Anthoceros agrestis HOM05D002553 ORTHO05D002767 1.4e-29 134.8 174 40.2
EL10Ac4g09309 Beta vulgaris HOM05D002553 ORTHO05D002767 9.4e-29 132.1 403 27.8
PGSC0003DMG400018888 Solanum tuberosum HOM05D002553 ORTHO05D002767 1.5e-26 124.8 400 28.8
CBR_g66786 Chara braunii HOM05D002553 ORTHO05D002767 1.6e-23 114.8 410 27.8
unitig_32.g11004 Utricularia gibba HOM05D002553 ORTHO05D002767 5.5e-21 106.3 249 30.1
vmacro19642 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 7.2e-21 105.9 235 31.1
SEGI_18575 Sequoiadendron giganteum HOM05D002553 ORTHO05D002767 6.7e-19 99.4 163 37.4
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 4.5e-15 86.7 258 29.5
MCO08G105 Micromonas commoda HOM05D002553 ORTHO05D002767 4.5e-15 86.7 418 23.7
CAN.G271.6 Capsicum annuum HOM05D000541 ORTHO05D000137 1.2e-12 78.6 167 34.1
Glyma.03G240200 Glycine max HOM05D002553 ORTHO05D002767 1.2e-12 78.6 164 29.9
Mapoly0019s0025 Marchantia polymorpha HOM05D014140 ORTHO05D015854 7.5e-10 69.3 84 44.0
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 9.8e-10 68.9 199 28.6
THA.LOC104826460 Tarenaya hassleriana HOM05D002956 ORTHO05D008031 8.3e-09 65.9 151 29.1
SEGI_17728 Sequoiadendron giganteum HOM05D014140 ORTHO05D015854 1.4e-08 65.1 135 32.6
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 4.1e-08 63.5 299 25.1
GSVIVG01037341001 Vitis vinifera HOM05D002956 ORTHO05D008031 4.1e-08 63.5 124 29.8
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 5.4e-08 63.2 199 25.6
Zm00001eb329010 Zea mays HOM05D002956 ORTHO05D008031 7.0e-08 62.8 98 37.8
Prupe.4G260400 Prunus persica HOM05D002956 ORTHO05D008031 9.1e-08 62.4 203 27.6
Nn7g36838 Nelumbo nucifera HOM05D002956 ORTHO05D008031 1.6e-07 61.6 202 25.7
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 2.7e-07 60.8 161 29.8
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 2.7e-07 60.8 199 27.6
vmacro19643 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 2.7e-07 60.8 189 27.0
HanXRQChr12g0380421 Helianthus annuus HOM05D002956 ORTHO05D008031 3.5e-07 60.5 126 31.7
Sed0014482 Sechium edule HOM05D002956 ORTHO05D008031 3.5e-07 60.5 124 29.8
Lj2g0007566 Lotus japonicus HOM05D006745 ORTHO05D008449 4.5e-07 60.1 193 26.9
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 5.9e-07 59.7 199 25.6
MCO10G274 Micromonas commoda HOM05D014557 ORTHO05D017305 7.7e-07 59.3 124 31.5
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 7.7e-07 59.3 202 26.7
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 1.0e-06 58.9 182 29.1
Sp4g08660 Schrenkiella parvula HOM05D002956 ORTHO05D008031 1.3e-06 58.5 154 28.6
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 1.7e-06 58.2 151 27.8
CiPaw.14G111000 Carya illinoinensis HOM05D002956 ORTHO05D008031 1.7e-06 58.2 199 25.1
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 2.2e-06 57.8 155 27.7
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 2.2e-06 57.8 167 27.5
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 2.9e-06 57.4 128 29.7
Aqoxy2G00442 Aquilegia oxysepala HOM05D002956 ORTHO05D008031 2.9e-06 57.4 134 26.1
ECA233G6038 Erigeron canadensis HOM05D002956 ORTHO05D008031 2.9e-06 57.4 126 30.2
PSO339G2954 Papaver somniferum HOM05D002956 ORTHO05D008031 2.9e-06 57.4 151 26.5
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 3.8e-06 57.0 206 24.8
CSS0028745 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 3.8e-06 57.0 140 30.0
PGR119G0612 Punica granatum HOM05D002956 ORTHO05D008031 3.8e-06 57.0 205 26.3
Sc06g0004740 Simmondsia chinensis HOM05D002956 ORTHO05D008031 5.0e-06 56.6 76 36.8
GSVIVG01013248001 Vitis vinifera HOM05D001602 ORTHO05D001470 5.0e-06 56.6 118 32.2
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 6.5e-06 56.2 144 29.2
ClCG02G022710 Citrullus lanatus HOM05D002956 ORTHO05D008031 6.5e-06 56.2 252 24.6
Duzib150G0193 Durio zibethinus HOM05D002956 ORTHO05D008031 6.5e-06 56.2 200 26.5
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 6.5e-06 56.2 167 25.7
Lj6g0022582 Lotus japonicus HOM05D002956 ORTHO05D008031 6.5e-06 56.2 124 29.8
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 6.5e-06 56.2 136 27.2
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 8.5e-06 55.8 282 24.8
CSS0006448 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D008031 8.5e-06 55.8 158 24.7
Gorai.001G135400 Gossypium raimondii HOM05D002956 ORTHO05D008031 8.5e-06 55.8 70 38.6
MD00G1134600 Malus domestica HOM05D002956 ORTHO05D008031 8.5e-06 55.8 124 30.6


User provided reference genes

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