Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.3e-86 321.2 157 100.0
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.2e-23 111.7 131 45.8
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.5e-19 99.0 142 41.5
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.0e-18 97.4 135 45.2
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.8e-18 95.5 131 39.7
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.9e-17 93.2 129 41.9
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 7.2e-17 91.3 147 40.8
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.8e-15 84.7 138 35.5
Mapoly0037s0069 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.4e-14 82.4 138 34.8
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 5.7e-14 81.6 137 37.2
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 9.8e-14 80.9 137 36.5
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.3e-13 80.5 133 34.6
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 1.7e-13 80.1 138 35.5
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 8.3e-13 77.8 135 33.3
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 1.1e-12 77.4 140 36.4
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 1.1e-12 77.4 139 36.0
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 1.8e-12 76.6 137 35.0
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 7.0e-12 74.7 136 36.0
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 7.0e-12 74.7 136 33.8
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 9.2e-12 74.3 138 33.3
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 9.2e-12 74.3 133 33.8
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 1.2e-11 73.9 151 33.8
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 1.6e-11 73.6 137 32.8
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 2.0e-11 73.2 144 34.0
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 2.7e-11 72.8 140 34.3
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 3.5e-11 72.4 155 32.9
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 4.5e-11 72.0 150 31.3
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 5.9e-11 71.6 144 33.3
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 7.8e-11 71.2 145 33.8
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 1.0e-10 70.9 137 32.8
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 1.0e-10 70.9 144 32.6
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 1.7e-10 70.1 145 29.7
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 2.3e-10 69.7 137 32.1
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 2.9e-10 69.3 141 32.6
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 2.9e-10 69.3 142 35.2
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 3.8e-10 68.9 134 30.6
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.8e-10 68.9 137 32.1
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 3.8e-10 68.9 137 32.1
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 3.8e-10 68.9 139 32.4
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 3.8e-10 68.9 137 31.4
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 5.0e-10 68.6 136 33.8
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 6.6e-10 68.2 135 31.1
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 6.6e-10 68.2 138 29.7
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 8.6e-10 67.8 135 31.9
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 8.6e-10 67.8 152 32.9
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 1.1e-09 67.4 136 34.6
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 1.1e-09 67.4 148 30.4
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.1e-09 67.4 139 33.1
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 1.5e-09 67.0 136 32.4
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 1.5e-09 67.0 138 29.7
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 1.5e-09 67.0 143 32.9
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 1.5e-09 67.0 138 31.9
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 1.5e-09 67.0 140 32.9
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.9e-09 66.6 137 31.4
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 1.9e-09 66.6 137 38.0
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 1.9e-09 66.6 141 34.8
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 1.9e-09 66.6 133 33.8
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 2.5e-09 66.2 139 30.9
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 2.5e-09 66.2 133 34.6
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 2.5e-09 66.2 136 33.1
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 3.3e-09 65.9 140 32.1
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 4.3e-09 65.5 136 30.9
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 4.3e-09 65.5 140 31.4
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 7.3e-09 64.7 130 36.2
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 7.3e-09 64.7 138 31.9
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 7.3e-09 64.7 132 32.6
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 9.5e-09 64.3 135 31.9
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 9.5e-09 64.3 145 28.3
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 1.2e-08 63.9 143 30.8
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.6e-08 63.5 143 29.4
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.6e-08 63.5 143 29.4
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.6e-08 63.5 140 32.1
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 1.6e-08 63.5 141 32.6
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 2.1e-08 63.2 135 32.6
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 2.1e-08 63.2 140 30.7
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.1e-08 63.2 135 31.1
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 2.8e-08 62.8 140 30.0
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 2.8e-08 62.8 133 30.8
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 2.8e-08 62.8 132 31.8
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 3.6e-08 62.4 131 31.3
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 3.6e-08 62.4 133 30.8
Rhsim10G0205800 Rhododendron simsii HOM05D003374 ORTHO05D009470 3.6e-08 62.4 106 35.8
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 3.6e-08 62.4 133 30.8
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 4.7e-08 62.0 135 30.4
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 4.7e-08 62.0 125 31.2
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 6.1e-08 61.6 130 29.2
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 8.0e-08 61.2 137 29.9
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 8.0e-08 61.2 136 30.9
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.0e-07 60.8 136 30.1
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 1.0e-07 60.8 132 31.1
Dinv08548 Davidia involucrata HOM05D003374 ORTHO05D009470 1.4e-07 60.5 101 38.6
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.4e-07 60.5 152 30.9
Gohir.D03G005500 Gossypium hirsutum HOM05D003374 ORTHO05D009470 1.4e-07 60.5 113 32.7
Gorai.003G005900 Gossypium raimondii HOM05D003374 ORTHO05D009470 1.4e-07 60.5 113 32.7
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 1.4e-07 60.5 141 29.8
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 1.4e-07 60.5 130 26.9
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 1.8e-07 60.1 135 32.6
Thecc.01G011500 Theobroma cacao HOM05D003374 ORTHO05D009470 1.8e-07 60.1 107 37.4
Gohir.A02G174300 Gossypium hirsutum HOM05D003374 ORTHO05D009470 2.3e-07 59.7 113 33.6
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 3.0e-07 59.3 133 30.1
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 3.0e-07 59.3 134 28.4
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 3.0e-07 59.3 131 29.0
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.0e-07 59.3 136 30.1
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 4.0e-07 58.9 123 30.9
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 5.2e-07 58.5 131 29.8
Duzib145G0002 Durio zibethinus HOM05D003374 ORTHO05D009470 5.2e-07 58.5 112 33.0
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 5.2e-07 58.5 154 29.9
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 6.8e-07 58.2 131 29.8
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 8.9e-07 57.8 131 32.1
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 8.9e-07 57.8 130 27.7
Cfa007029 Carpinus fangiana HOM05D003374 ORTHO05D009470 8.9e-07 57.8 117 32.5
Sabra05G0088300 Salix brachista HOM05D003374 ORTHO05D009470 1.2e-06 57.4 111 34.2
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.5e-06 57.0 132 28.8
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 1.5e-06 57.0 140 28.6
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 1.5e-06 57.0 130 26.2
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 1.5e-06 57.0 138 29.7
Duzib147G0965 Durio zibethinus HOM05D003374 ORTHO05D009470 2.0e-06 56.6 107 32.7
PSO541G4788 Papaver somniferum HOM05D003374 ORTHO05D009470 2.0e-06 56.6 99 35.4
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 2.0e-06 56.6 149 29.5
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 2.0e-06 56.6 149 28.9
vmacro20496 Vaccinium macrocarpon HOM05D003374 ORTHO05D009470 2.0e-06 56.6 101 32.7
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 2.0e-06 56.6 130 32.3
EL10Ac9g21336 Beta vulgaris HOM05D003374 ORTHO05D009470 2.6e-06 56.2 109 33.9
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 2.6e-06 56.2 130 28.5
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 2.6e-06 56.2 130 28.5
PSO675G4674 Papaver somniferum HOM05D003374 ORTHO05D009470 2.6e-06 56.2 99 35.4
VMungo1215G1047 Vigna mungo HOM05D003374 ORTHO05D009470 2.6e-06 56.2 105 38.1
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 3.4e-06 55.8 131 27.5
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 3.4e-06 55.8 132 27.3
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 3.4e-06 55.8 138 29.7
Potri.005G107800 Populus trichocarpa HOM05D003374 ORTHO05D009470 3.4e-06 55.8 111 33.3
Ciclev10026638m.g Citrus clementina HOM05D003374 ORTHO05D009470 4.4e-06 55.5 104 29.8
Phvul.002G104800 Phaseolus vulgaris HOM05D003374 ORTHO05D009470 4.4e-06 55.5 104 35.6
Prupe.7G175000 Prunus persica HOM05D003374 ORTHO05D009470 4.4e-06 55.5 108 35.2
QL06p052079 Quercus lobata HOM05D003374 ORTHO05D009470 4.4e-06 55.5 103 35.9
Atru.chr3.907 Acer truncatum HOM05D003374 ORTHO05D009470 5.8e-06 55.1 102 31.4
CSS0026426 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 5.8e-06 55.1 106 34.0
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 5.8e-06 55.1 130 26.9
Haze_03703 Corylus avellana HOM05D003374 ORTHO05D009415 5.8e-06 55.1 104 33.7
FvH4_1g11080 Fragaria vesca HOM05D003374 ORTHO05D009470 5.8e-06 55.1 118 33.1
FAN26G1101 Fragaria x ananassa HOM05D003374 ORTHO05D009470 5.8e-06 55.1 117 34.2
Manes.02G110400 Manihot esculenta HOM05D003374 ORTHO05D009470 5.8e-06 55.1 102 37.3
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 5.8e-06 55.1 140 28.6
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 5.8e-06 55.1 140 28.6
RcHm_v2.0_Chr2g0098351 Rosa chinensis HOM05D003374 ORTHO05D009470 5.8e-06 55.1 114 35.1
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 7.5e-06 54.7 119 26.9
Sp3g31120 Schrenkiella parvula HOM05D003374 ORTHO05D009470 7.5e-06 54.7 103 33.0
FAN23G1041 Fragaria x ananassa HOM05D003374 ORTHO05D009470 9.8e-06 54.3 118 33.1
FAN28G2426 Fragaria x ananassa HOM05D003374 ORTHO05D009470 9.8e-06 54.3 118 33.1


User provided reference genes

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