Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 2.5e-68 261.9 128 100.0
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 4.1e-18 95.1 55 74.5
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 1.3e-16 90.1 106 45.3
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 5.0e-16 88.2 60 61.7
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 5.0e-16 88.2 122 38.5
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 6.5e-16 87.8 55 67.3
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 6.5e-16 87.8 84 50.0
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 1.1e-15 87.0 50 72.0
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.5e-15 86.7 74 54.1
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.5e-15 86.7 115 42.6
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.5e-15 86.7 60 63.3
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.9e-15 86.3 84 54.8
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 1.9e-15 86.3 64 60.9
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.9e-15 86.3 51 70.6
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.9e-15 86.3 50 72.0
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.9e-15 86.3 68 54.4
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 1.9e-15 86.3 68 54.4
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 1.9e-15 86.3 106 45.3
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.5e-15 85.9 51 68.6
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.5e-15 85.9 51 68.6
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 2.5e-15 85.9 63 58.7
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 3.2e-15 85.5 50 70.0
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 3.2e-15 85.5 106 43.4
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 3.2e-15 85.5 84 48.8
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 3.2e-15 85.5 60 63.3
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 3.2e-15 85.5 60 63.3
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 3.2e-15 85.5 77 49.4
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 4.2e-15 85.1 84 48.8
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 4.2e-15 85.1 51 68.6
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 4.2e-15 85.1 97 46.4
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 4.2e-15 85.1 83 50.6
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 5.5e-15 84.7 50 72.0
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 5.5e-15 84.7 89 46.1
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 5.5e-15 84.7 85 52.9
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 5.5e-15 84.7 85 52.9
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 5.5e-15 84.7 50 70.0
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 5.5e-15 84.7 51 68.6
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 7.2e-15 84.3 51 66.7
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 7.2e-15 84.3 100 41.0
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 7.2e-15 84.3 68 54.4
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 7.2e-15 84.3 58 60.3
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 7.2e-15 84.3 51 68.6
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 7.2e-15 84.3 50 68.0
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 9.4e-15 84.0 90 46.7
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 9.4e-15 84.0 51 70.6
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 9.4e-15 84.0 50 70.0
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.2e-14 83.6 51 64.7
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 1.2e-14 83.6 51 68.6
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 1.6e-14 83.2 51 66.7
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 1.6e-14 83.2 51 66.7
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.6e-14 83.2 51 68.6
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.6e-14 83.2 50 68.0
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 1.6e-14 83.2 51 66.7
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 1.6e-14 83.2 50 68.0
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 1.6e-14 83.2 104 41.3
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 2.1e-14 82.8 70 54.3
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 2.1e-14 82.8 50 68.0
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 2.1e-14 82.8 103 42.7
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 2.7e-14 82.4 103 42.7
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 2.7e-14 82.4 51 62.7
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 2.7e-14 82.4 51 68.6
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 3.6e-14 82.0 51 66.7
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 3.6e-14 82.0 51 66.7
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 3.6e-14 82.0 51 66.7
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 3.6e-14 82.0 50 66.0
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 3.6e-14 82.0 51 66.7
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 3.6e-14 82.0 102 45.1
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 3.6e-14 82.0 51 64.7
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 4.7e-14 81.6 52 65.4
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 4.7e-14 81.6 87 46.0
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 6.1e-14 81.3 51 62.7
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 6.1e-14 81.3 50 66.0
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 6.1e-14 81.3 51 64.7
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 8.0e-14 80.9 51 66.7
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 8.0e-14 80.9 51 66.7
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 8.0e-14 80.9 51 64.7
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 8.0e-14 80.9 51 64.7
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 8.0e-14 80.9 50 66.0
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 8.0e-14 80.9 51 66.7
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 1.0e-13 80.5 67 53.7
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.0e-13 80.5 54 59.3
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.0e-13 80.5 54 59.3
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 1.0e-13 80.5 51 62.7
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 1.0e-13 80.5 51 64.7
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 1.0e-13 80.5 51 60.8
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 1.0e-13 80.5 51 62.7
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 1.4e-13 80.1 51 62.7
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 1.4e-13 80.1 51 62.7
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 1.4e-13 80.1 51 62.7
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 1.4e-13 80.1 51 62.7
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 1.4e-13 80.1 51 62.7
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.4e-13 80.1 50 66.0
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.4e-13 80.1 51 64.7
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 1.4e-13 80.1 51 64.7
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.8e-13 79.7 51 62.7
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 1.8e-13 79.7 51 60.8
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.8e-13 79.7 51 62.7
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 1.8e-13 79.7 51 62.7
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 1.8e-13 79.7 102 42.2
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 2.3e-13 79.3 51 64.7
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 2.3e-13 79.3 51 62.7
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 3.0e-13 79.0 51 62.7
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 3.0e-13 79.0 51 62.7
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 3.0e-13 79.0 51 62.7
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 3.0e-13 79.0 51 62.7
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 4.0e-13 78.6 51 60.8
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 4.0e-13 78.6 51 62.7
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 5.2e-13 78.2 50 64.0
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 5.2e-13 78.2 51 60.8
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 5.2e-13 78.2 51 62.7
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 6.8e-13 77.8 54 61.1
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 8.8e-13 77.4 50 68.0
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 8.8e-13 77.4 53 58.5
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 8.8e-13 77.4 63 57.1
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 1.5e-12 76.6 51 62.7
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 1.5e-12 76.6 51 62.7
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 1.5e-12 76.6 50 64.0
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 1.5e-12 76.6 58 58.6
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 4.4e-12 75.1 53 58.5
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 8.3e-11 70.9 51 54.9
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 2.4e-10 69.3 42 69.0
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 4.1e-10 68.6 94 39.4
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 1.2e-09 67.0 50 60.0
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 2.0e-09 66.2 55 52.7
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 3.5e-09 65.5 42 61.9
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.3e-08 63.5 117 34.2
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 1.7e-08 63.2 49 53.1
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 6.5e-08 61.2 54 53.7
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 4.7e-06 55.1 84 36.9
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 8.0e-06 54.3 39 56.4


User provided reference genes

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