Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 0.0e+00 1125.2 554 100.0
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.6e-199 699.9 550 62.5
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 2.5e-189 666.0 545 60.2
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 3.3e-189 665.6 547 59.2
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 3.3e-189 665.6 545 59.8
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 5.6e-189 664.8 545 60.2
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 2.8e-188 662.5 546 60.1
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 3.6e-188 662.1 545 59.3
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 3.6e-188 662.1 543 59.9
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 6.2e-188 661.4 547 59.8
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 8.1e-188 661.0 546 60.1
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 1.8e-187 659.8 550 58.7
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 5.2e-187 658.3 545 58.7
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 5.2e-187 658.3 542 60.3
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 8.9e-187 657.5 545 59.4
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 8.9e-187 657.5 545 59.4
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 1.2e-186 657.1 543 59.3
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 1.2e-186 657.1 545 59.3
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 3.4e-186 655.6 552 58.3
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 4.4e-186 655.2 545 59.4
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 5.8e-186 654.8 554 58.8
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 5.8e-186 654.8 548 59.7
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 5.8e-186 654.8 544 59.2
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 1.3e-185 653.7 544 59.0
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 2.2e-185 652.9 545 59.1
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 2.2e-185 652.9 544 58.6
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 4.9e-185 651.7 545 58.7
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 4.9e-185 651.7 545 58.7
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 4.9e-185 651.7 545 58.7
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 1.1e-184 650.6 545 58.7
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 1.4e-184 650.2 541 59.1
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 3.2e-184 649.0 545 59.3
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 7.1e-184 647.9 542 59.0
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 7.1e-184 647.9 546 58.8
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 9.2e-184 647.5 545 58.3
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 3.5e-183 645.6 545 58.7
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 3.5e-183 645.6 540 58.9
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 6.0e-183 644.8 547 60.1
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 7.8e-183 644.4 546 58.2
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 7.8e-183 644.4 542 58.5
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 1.3e-182 643.7 546 58.6
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.3e-182 643.7 546 58.8
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.7e-182 643.3 530 60.0
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.7e-182 643.3 545 57.4
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 1.7e-182 643.3 546 57.9
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 3.0e-182 642.5 545 57.4
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 3.0e-182 642.5 544 57.7
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 3.0e-182 642.5 546 58.4
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 3.0e-182 642.5 546 59.3
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 3.9e-182 642.1 545 57.8
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 3.9e-182 642.1 544 58.3
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 5.1e-182 641.7 545 58.9
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 6.6e-182 641.3 541 59.1
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 8.7e-182 641.0 545 57.6
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 8.7e-182 641.0 545 58.5
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.1e-181 640.6 545 58.3
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 1.1e-181 640.6 545 57.8
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 1.5e-181 640.2 545 57.8
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 1.9e-181 639.8 551 57.9
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.9e-181 639.8 545 57.1
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.9e-181 639.8 562 56.9
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.9e-181 639.8 546 57.7
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 1.9e-181 639.8 546 57.0
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 2.5e-181 639.4 545 58.0
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 5.6e-181 638.3 546 59.2
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 7.3e-181 637.9 545 58.2
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 9.6e-181 637.5 546 58.1
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.2e-180 637.1 545 57.6
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 1.6e-180 636.7 563 56.5
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 1.6e-180 636.7 546 56.2
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 2.8e-180 636.0 545 58.0
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 2.8e-180 636.0 545 58.0
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 3.6e-180 635.6 526 59.3
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 4.7e-180 635.2 551 57.4
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 1.1e-179 634.0 544 57.0
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 1.8e-179 633.3 545 58.0
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.8e-179 633.3 545 59.1
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 1.8e-179 633.3 546 57.3
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 2.4e-179 632.9 543 57.6
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 4.0e-179 632.1 547 58.0
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 5.3e-179 631.7 545 57.2
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 1.2e-178 630.6 486 62.1
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 2.0e-178 629.8 545 58.0
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 2.6e-178 629.4 534 58.6
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 2.9e-177 625.9 544 58.1
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 1.4e-176 623.6 522 58.6
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 1.9e-176 623.2 536 57.3
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 2.4e-176 622.9 545 58.0
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 2.4e-176 622.9 547 56.9
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 5.4e-176 621.7 545 57.4
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 7.1e-176 621.3 548 57.7
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 1.6e-175 620.2 545 56.3
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 2.7e-175 619.4 564 55.3
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 3.5e-175 619.0 546 56.4
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 7.8e-175 617.8 547 57.4
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 1.3e-174 617.1 546 55.9
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 2.3e-174 616.3 544 56.4
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 6.6e-174 614.8 548 57.7
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.9e-173 613.2 563 55.2
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 3.3e-173 612.5 539 56.8
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 5.6e-173 611.7 547 56.7
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 5.6e-173 611.7 546 55.9
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 9.6e-173 610.9 553 55.7
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 1.3e-172 610.5 541 56.7
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 1.1e-171 607.4 520 57.7
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.4e-171 606.3 572 54.7
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 1.3e-169 600.5 551 57.7
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 1.1e-168 597.4 534 56.6
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 2.4e-168 596.3 544 54.4
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 8.7e-166 587.8 484 59.9
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.9e-165 586.6 588 51.7
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 4.3e-165 585.5 552 55.4
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 2.8e-164 582.8 556 54.1
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 1.4e-163 580.5 551 54.4
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 2.4e-163 579.7 555 53.9
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 4.0e-163 578.9 542 54.6
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 4.0e-163 578.9 484 58.7
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 6.4e-161 571.6 538 54.3
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 2.5e-160 569.7 543 53.4
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 3.2e-160 569.3 484 59.1
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 4.2e-160 568.9 434 62.9
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.4e-155 553.9 588 50.5
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 2.6e-154 549.7 538 53.0
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 3.4e-154 549.3 545 52.8
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 8.5e-145 518.1 386 63.0
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 2.5e-144 516.5 551 50.5
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 2.5e-144 516.5 383 64.0
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.7e-143 513.1 423 60.5
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 1.2e-135 487.6 383 61.6
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 6.7e-126 455.3 331 64.4
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 1.3e-105 387.9 300 62.7
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.6e-95 354.4 281 61.6
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 8.3e-92 342.0 317 55.2
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 9.2e-91 338.6 316 52.5
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 6.0e-90 335.9 333 51.4
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 2.8e-87 327.0 286 55.6
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 3.1e-86 323.6 238 66.0
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 3.7e-84 316.6 261 58.2
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 1.1e-80 305.1 297 55.2
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 4.0e-78 296.6 230 63.9
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 3.0e-73 280.4 269 52.0
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 3.3e-72 276.9 264 52.3
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 6.4e-68 262.7 240 53.8
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 1.2e-42 178.7 140 63.6
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.7e-42 177.6 136 61.8
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 8.7e-41 172.6 136 60.3
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 9.6e-40 169.1 136 58.8
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.8e-38 164.9 136 57.4
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.4e-37 160.6 128 60.2
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 1.4e-35 155.2 202 43.1
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 1.0e-28 132.5 98 65.3
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 1.6e-26 125.2 98 62.2
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 3.1e-22 110.9 483 25.9
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 9.4e-19 99.4 427 26.0
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 4.7e-18 97.1 56 67.9
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 2.6e-16 91.3 63 57.1
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 4.4e-16 90.5 63 55.6
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 5.7e-16 90.1 236 29.2
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 9.7e-16 89.4 63 55.6
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 2.2e-15 88.2 71 47.9
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 4.8e-15 87.0 65 63.1
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 8.2e-15 86.3 105 45.7
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 8.2e-15 86.3 65 63.1
PRCOL_00006907 Prasinoderma coloniale HOM05D013921 ORTHO05D014814 1.7e-12 78.6 510 24.1
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 1.6e-10 72.0 54 53.7
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 1.3e-07 62.4 54 51.9


User provided reference genes

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