Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 5.8e-275 950.3 482 100.0
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 1.8e-167 593.2 418 69.4
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 4.3e-153 545.4 408 68.9
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 3.1e-151 539.3 396 69.7
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 2.9e-149 532.7 402 67.9
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 6.4e-149 531.6 444 62.8
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 1.9e-148 530.0 404 67.8
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 3.2e-148 529.3 402 68.7
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 2.1e-147 526.6 405 66.9
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 4.6e-147 525.4 402 67.2
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 4.6e-147 525.4 413 64.9
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 6.0e-147 525.0 429 63.9
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 1.0e-146 524.2 409 66.5
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 3.0e-146 522.7 406 66.3
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 3.0e-146 522.7 414 65.9
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 3.9e-146 522.3 395 69.1
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 6.7e-146 521.5 423 64.5
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 6.7e-146 521.5 479 59.9
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 8.7e-146 521.2 434 63.8
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 1.1e-145 520.8 402 66.9
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 1.5e-145 520.4 404 67.3
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 1.9e-145 520.0 429 63.2
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 2.5e-145 519.6 405 66.9
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 2.5e-145 519.6 399 66.7
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 3.3e-145 519.2 402 66.7
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 3.3e-145 519.2 399 67.9
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 4.3e-145 518.8 415 65.5
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 4.3e-145 518.8 403 65.0
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 1.3e-144 517.3 408 65.2
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 1.3e-144 517.3 430 62.8
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 1.6e-144 516.9 405 65.2
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 2.8e-144 516.2 416 64.7
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 3.7e-144 515.8 399 66.4
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 4.8e-144 515.4 402 65.9
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 4.8e-144 515.4 400 67.2
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 1.1e-143 514.2 413 65.9
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 1.1e-143 514.2 402 66.2
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 1.4e-143 513.8 402 65.7
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 1.4e-143 513.8 424 65.3
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 3.1e-143 512.7 403 65.8
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 4.0e-143 512.3 403 64.8
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 5.3e-143 511.9 399 66.4
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 6.9e-143 511.5 402 66.4
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 6.9e-143 511.5 392 67.3
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 9.0e-143 511.1 406 65.0
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 9.0e-143 511.1 399 64.9
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 1.2e-142 510.8 389 66.1
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 3.4e-142 509.2 403 66.0
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 4.5e-142 508.8 392 67.3
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 7.6e-142 508.1 427 63.9
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 9.9e-142 507.7 435 61.8
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 1.3e-141 507.3 422 63.0
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 1.3e-141 507.3 388 67.3
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.2e-141 506.5 402 64.7
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 3.8e-141 505.8 395 67.3
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 4.2e-140 502.3 426 62.4
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 4.6e-139 498.8 444 59.9
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 6.0e-139 498.4 434 61.5
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 1.3e-138 497.3 435 62.8
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 4.3e-137 492.3 373 68.4
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 5.6e-137 491.9 389 66.3
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 7.4e-137 491.5 401 63.8
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 6.2e-136 488.4 380 66.1
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 6.9e-135 485.0 403 64.0
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 8.4e-133 478.0 414 63.0
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 8.4e-133 478.0 356 69.9
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 1.2e-131 474.2 437 59.3
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 4.6e-131 472.2 530 51.5
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 7.9e-131 471.5 381 63.5
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 7.9e-131 471.5 464 56.5
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 1.3e-128 464.2 393 63.1
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 1.4e-127 460.7 429 58.3
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 3.1e-127 459.5 406 61.8
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 2.9e-125 453.0 355 68.2
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 2.5e-124 449.9 401 60.1
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 7.2e-124 448.4 403 60.8
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 3.9e-122 442.6 405 59.5
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 2.8e-120 436.4 303 73.6
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 2.4e-119 433.3 422 57.8
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 6.9e-119 431.8 445 54.2
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 2.5e-116 423.3 400 58.2
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 2.3e-114 416.8 430 57.2
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 8.2e-112 408.3 409 53.8
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 1.1e-111 407.9 468 48.9
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.8e-111 407.1 395 55.7
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 2.4e-111 406.8 447 52.1
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 2.6e-110 403.3 398 57.0
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 2.6e-110 403.3 401 53.1
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.9e-109 399.8 403 54.8
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 5.0e-109 399.1 403 53.6
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 9.4e-108 394.8 414 54.8
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 2.8e-104 383.3 364 58.2
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 8.5e-101 371.7 306 65.4
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 8.8e-98 361.7 377 54.1
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 4.8e-96 355.9 289 66.1
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 1.4e-79 301.2 266 59.8
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 1.0e-77 295.0 267 59.2
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 2.5e-76 290.4 199 75.4
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 3.9e-69 266.5 206 69.4
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 9.5e-68 261.9 252 60.3
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 1.2e-65 255.0 193 69.9
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 5.6e-60 236.1 209 57.4
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 1.2e-57 228.4 326 43.3
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 3.7e-56 223.4 158 74.1
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 1.4e-55 221.5 139 79.9
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 9.2e-55 218.8 183 60.1
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 9.2e-55 218.8 152 73.0
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.6e-54 218.0 183 59.0
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 1.0e-53 215.3 137 76.6
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.1e-52 211.8 126 81.0
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.1e-52 211.8 177 63.8
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 1.5e-52 211.5 211 57.8
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 1.5e-52 211.5 211 57.8
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 1.5e-52 211.5 211 57.8
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 2.5e-52 210.7 188 56.4
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 3.6e-51 206.8 217 58.5
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 1.4e-50 204.9 160 67.5
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 8.4e-48 195.7 552 30.1
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 1.5e-44 184.9 163 56.4
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 3.1e-42 177.2 141 66.0
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.0e-37 162.2 106 78.3
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 4.2e-31 140.2 84 81.0
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 3.0e-29 134.0 134 49.3
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 1.5e-28 131.7 99 69.7
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 2.1e-27 127.9 110 62.7
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 3.7e-27 127.1 89 74.2
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 1.3e-24 118.6 120 50.0
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.7e-24 118.2 74 71.6
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 3.8e-24 117.1 124 54.0
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 2.5e-20 104.4 73 67.1
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 2.6e-17 94.4 144 37.5
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 3.4e-17 94.0 61 73.8
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 1.9e-15 88.2 86 53.5
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 1.4e-10 72.0 164 31.1
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 3.1e-10 70.9 181 31.5
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 7.7e-09 66.2 72 48.6
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 5.5e-07 60.1 60 46.7


User provided reference genes

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