Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 0.0e+00 2681.7 1393 100.0
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 5.4e-249 865.5 1414 39.6
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 2.3e-178 630.9 1439 33.7
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 5.2e-175 619.8 1427 31.9
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 2.2e-173 614.4 1426 32.0
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 4.9e-173 613.2 1421 31.9
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 8.3e-173 612.5 1422 32.2
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.6e-171 608.2 1432 31.9
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.6e-171 608.2 1428 31.9
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 2.7e-171 607.4 1425 32.1
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 2.3e-170 604.4 1451 31.0
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 3.9e-170 603.6 1425 31.9
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 3.9e-170 603.6 1431 31.4
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 8.6e-170 602.4 1436 32.3
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 3.3e-169 600.5 1379 32.6
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 2.8e-168 597.4 1447 31.3
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 4.7e-168 596.7 1424 32.2
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 4.7e-168 596.7 1452 32.2
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 8.0e-168 595.9 1457 32.3
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 1.0e-167 595.5 1420 31.5
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 1.0e-167 595.5 1455 31.5
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 1.4e-167 595.1 1442 31.6
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 4.0e-167 593.6 1446 31.7
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 4.0e-167 593.6 1442 31.3
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 5.8e-166 589.7 1416 31.4
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 2.2e-165 587.8 1407 32.7
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 3.7e-165 587.0 1436 32.1
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 4.9e-165 586.6 1033 37.5
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 1.1e-164 585.5 1405 31.4
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 5.4e-164 583.2 1369 32.4
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 5.4e-164 583.2 1470 31.2
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 7.0e-164 582.8 1438 30.9
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 2.0e-163 581.3 1417 31.6
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 3.5e-163 580.5 1443 31.1
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 7.8e-163 579.3 1430 31.4
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 1.0e-162 578.9 1413 31.6
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 3.0e-162 577.4 1428 31.0
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 3.9e-162 577.0 1375 32.0
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 3.9e-162 577.0 1456 32.1
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 6.6e-162 576.2 1420 30.6
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 3.3e-161 573.9 1424 31.5
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 1.2e-160 572.0 1425 30.9
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 2.8e-160 570.9 1398 31.5
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 2.6e-158 564.3 1426 31.4
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 5.8e-158 563.1 1396 30.7
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.9e-157 560.8 1413 30.9
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 6.4e-157 559.7 1455 30.8
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 4.1e-156 557.0 1395 32.1
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 3.5e-155 553.9 1433 31.1
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 1.5e-153 548.5 1428 31.1
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 1.9e-153 548.1 1375 32.1
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 3.3e-153 547.4 1399 30.6
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 2.1e-152 544.7 1438 29.6
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 4.7e-152 543.5 1425 31.2
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 1.1e-151 542.3 1403 30.9
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 1.8e-151 541.6 1485 30.8
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 3.1e-151 540.8 1505 29.5
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 5.2e-151 540.0 1415 30.6
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 1.5e-150 538.5 1212 31.6
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 5.8e-150 536.6 1484 30.6
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 7.5e-150 536.2 1408 30.4
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 6.4e-149 533.1 1410 30.5
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 1.4e-148 531.9 1376 31.1
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 1.4e-148 531.9 1371 30.9
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 7.1e-148 529.6 1430 29.5
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 4.6e-147 526.9 1408 30.0
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 4.6e-147 526.9 1383 30.7
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 1.0e-146 525.8 1386 31.7
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 3.0e-146 524.2 1430 29.5
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 5.1e-146 523.5 1387 30.4
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 5.6e-145 520.0 1421 31.0
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 1.6e-144 518.5 1399 29.7
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 5.2e-143 513.5 1412 30.3
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 3.4e-142 510.8 1583 28.6
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 2.2e-141 508.1 1282 31.1
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 5.4e-140 503.4 1411 29.6
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 1.2e-139 502.3 1404 30.3
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 4.8e-136 490.3 1452 28.9
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 6.2e-136 490.0 1376 29.6
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 1.1e-124 452.6 1591 28.2
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 1.8e-122 445.3 1048 32.1
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.5e-118 432.2 1054 32.2
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 8.4e-117 426.4 1071 30.6
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 2.1e-115 421.8 1437 27.0
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 2.5e-105 388.3 1197 28.7
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 2.0e-102 378.6 1079 29.9
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.1e-100 372.9 859 32.2
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 9.7e-97 359.8 1152 28.0
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 3.8e-93 347.8 841 31.7
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 9.7e-89 333.2 1401 25.2
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 6.5e-85 320.5 658 35.0
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 9.7e-81 306.6 849 28.9
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.8e-80 304.3 510 38.0
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 1.2e-78 299.7 776 30.3
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 8.5e-77 293.5 628 35.4
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.6e-75 289.3 557 35.2
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 8.0e-75 287.0 726 29.8
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 7.0e-71 273.9 563 34.8
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 4.2e-68 264.6 1377 23.8
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 7.7e-62 243.8 495 34.7
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 7.0e-55 220.7 366 39.3
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 5.0e-53 214.5 475 34.1
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 1.6e-46 193.0 702 27.4
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 1.5e-44 186.4 495 28.5
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 3.7e-40 171.8 435 32.4
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 1.9e-39 169.5 1098 23.6
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 1.9e-39 169.5 440 30.0
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 6.0e-38 164.5 1392 23.1
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.5e-36 159.8 442 29.0
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 8.9e-34 150.6 326 32.8
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 1.3e-29 136.7 399 29.6
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 2.1e-27 129.4 371 27.8
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 6.2e-27 127.9 219 35.6
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 5.8e-25 121.3 385 27.0
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 6.4e-24 117.9 592 26.0
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 1.9e-23 116.3 174 39.1
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.9e-23 116.3 151 40.4
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.1e-22 112.8 268 31.0
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 2.7e-22 112.5 247 33.6
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 6.6e-21 107.8 412 30.6
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.1e-20 107.1 138 37.7
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 4.0e-18 98.6 575 22.1
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 4.0e-18 98.6 137 39.4
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 4.4e-17 95.1 266 28.2
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 5.8e-17 94.7 121 40.5
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.3e-13 83.6 113 37.2
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 4.8e-11 75.1 276 26.4
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 5.3e-10 71.6 385 23.1
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 9.0e-10 70.9 78 42.3
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 1.3e-08 67.0 205 27.8
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.1e-07 63.9 95 40.0
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 3.2e-07 62.4 91 40.7


User provided reference genes

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