Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 2.3e-56 222.2 135 100.0
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 1.5e-26 123.2 71 77.5
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.5e-23 113.2 70 71.4
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 4.2e-21 105.1 71 69.0
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 4.2e-21 105.1 71 69.0
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 1.2e-20 103.6 71 69.0
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 7.9e-20 100.9 105 53.3
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 1.0e-19 100.5 71 64.8
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.3e-19 100.1 96 57.3
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 1.3e-19 100.1 71 67.6
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 3.0e-19 99.0 71 66.2
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 3.0e-19 99.0 81 61.7
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 3.9e-19 98.6 104 54.8
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 5.1e-19 98.2 108 50.9
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 5.1e-19 98.2 95 55.8
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 5.1e-19 98.2 71 66.2
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 6.7e-19 97.8 104 54.8
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 6.7e-19 97.8 71 64.8
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 6.7e-19 97.8 71 64.8
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 8.7e-19 97.4 83 57.8
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 8.7e-19 97.4 71 66.2
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 8.7e-19 97.4 71 63.4
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 8.7e-19 97.4 74 62.2
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 8.7e-19 97.4 101 53.5
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 8.7e-19 97.4 71 63.4
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 8.7e-19 97.4 71 64.8
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 8.7e-19 97.4 79 62.0
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 1.1e-18 97.1 71 64.8
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 1.1e-18 97.1 70 62.9
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 1.1e-18 97.1 70 62.9
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 1.1e-18 97.1 71 66.2
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.5e-18 96.7 101 53.5
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 1.5e-18 96.7 94 56.4
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.9e-18 96.3 80 58.8
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.9e-18 96.3 80 58.8
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 1.9e-18 96.3 80 58.8
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 1.9e-18 96.3 71 64.8
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 1.9e-18 96.3 71 64.8
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 1.9e-18 96.3 71 64.8
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 1.9e-18 96.3 71 63.4
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 2.5e-18 95.9 81 56.8
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 2.5e-18 95.9 71 63.4
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 2.5e-18 95.9 71 63.4
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 2.5e-18 95.9 71 62.0
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 2.5e-18 95.9 71 63.4
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 2.5e-18 95.9 71 63.4
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 2.5e-18 95.9 100 53.0
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 3.3e-18 95.5 98 52.0
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 3.3e-18 95.5 80 58.8
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 3.3e-18 95.5 71 62.0
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 3.3e-18 95.5 101 53.5
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 3.3e-18 95.5 71 62.0
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 3.3e-18 95.5 71 62.0
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 5.6e-18 94.7 104 48.1
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 5.6e-18 94.7 71 62.0
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 5.6e-18 94.7 71 63.4
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 5.6e-18 94.7 71 63.4
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 5.6e-18 94.7 108 48.1
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 5.6e-18 94.7 71 62.0
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 7.4e-18 94.4 71 63.4
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 7.4e-18 94.4 97 53.6
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 7.4e-18 94.4 81 59.3
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 7.4e-18 94.4 84 59.5
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 7.4e-18 94.4 71 62.0
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 9.6e-18 94.0 100 52.0
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 9.6e-18 94.0 80 60.0
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 9.6e-18 94.0 113 49.6
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 9.6e-18 94.0 113 49.6
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 9.6e-18 94.0 71 60.6
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 9.6e-18 94.0 100 49.0
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 1.3e-17 93.6 88 55.7
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 1.3e-17 93.6 88 55.7
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 1.3e-17 93.6 88 55.7
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 1.3e-17 93.6 71 62.0
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 1.3e-17 93.6 71 62.0
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.3e-17 93.6 71 60.6
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 1.6e-17 93.2 71 63.4
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.6e-17 93.2 71 60.6
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 1.6e-17 93.2 102 52.0
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 2.1e-17 92.8 87 54.0
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.1e-17 92.8 87 54.0
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.1e-17 92.8 87 54.0
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 2.1e-17 92.8 82 58.5
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 2.1e-17 92.8 95 54.7
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 2.8e-17 92.4 71 63.4
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.8e-17 92.4 71 60.6
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 2.8e-17 92.4 105 47.6
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 2.8e-17 92.4 71 64.8
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 3.6e-17 92.0 81 56.8
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 3.6e-17 92.0 97 52.6
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 3.6e-17 92.0 100 48.0
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 3.6e-17 92.0 71 62.0
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 3.6e-17 92.0 71 64.8
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 4.8e-17 91.7 81 56.8
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 4.8e-17 91.7 71 60.6
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 6.2e-17 91.3 102 49.0
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 6.2e-17 91.3 71 59.2
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 8.1e-17 90.9 71 59.2
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 8.1e-17 90.9 79 57.0
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 1.1e-16 90.5 115 47.8
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.4e-16 90.1 83 57.8
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 1.8e-16 89.7 101 48.5
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 1.8e-16 89.7 101 47.5
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 2.4e-16 89.4 80 53.8
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 2.4e-16 89.4 64 65.6
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 3.1e-16 89.0 85 54.1
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 4.0e-16 88.6 71 56.3
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 4.0e-16 88.6 71 60.6
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 5.3e-16 88.2 84 52.4
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 6.9e-16 87.8 71 54.9
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 6.9e-16 87.8 81 54.3
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 9.0e-16 87.4 83 51.8
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 9.0e-16 87.4 85 50.6
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 1.2e-15 87.0 85 49.4
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 4.5e-15 85.1 82 52.4
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 5.8e-15 84.7 79 55.7
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 9.9e-15 84.0 98 50.0
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.9e-14 82.4 88 48.9
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 6.4e-14 81.3 64 57.8
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 6.4e-14 81.3 90 46.7
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 1.4e-13 80.1 120 42.5
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.9e-13 79.7 97 52.6
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.2e-12 77.0 73 53.4
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 7.9e-12 74.3 74 52.7
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 5.1e-11 71.6 59 54.2
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.9e-10 69.7 48 66.7
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 1.9e-10 69.7 70 48.6
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 2.4e-08 62.8 77 49.4
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.4e-08 62.8 63 55.6
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 3.1e-08 62.4 78 47.4
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 4.0e-08 62.0 95 41.1
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 5.3e-08 61.6 43 58.1
MCO09G323 Micromonas commoda HOM05D005845 ORTHO05D007067 3.4e-07 58.9 63 49.2
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.5e-07 58.5 49 53.1
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.7e-06 56.6 46 56.5


User provided reference genes

Program Settings