Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 4.5e-203 711.1 363 100.0
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.9e-108 396.7 361 54.0
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 3.6e-104 382.5 355 55.2
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 1.6e-99 367.1 344 54.9
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 5.1e-98 362.1 387 49.6
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 2.5e-97 359.8 355 51.5
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 2.8e-96 356.3 360 49.4
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 2.0e-94 350.1 357 49.0
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 2.6e-94 349.7 359 48.7
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 2.9e-93 346.3 355 49.0
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 3.8e-93 345.9 357 47.9
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 4.9e-93 345.5 353 49.0
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 4.9e-93 345.5 357 48.5
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 6.4e-93 345.1 360 47.5
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 1.4e-92 344.0 360 48.1
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 1.4e-92 344.0 361 47.9
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 1.9e-92 343.6 355 49.6
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 1.9e-92 343.6 357 47.6
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 4.2e-92 342.4 357 49.0
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 5.4e-92 342.0 357 47.9
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 5.4e-92 342.0 355 49.3
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 5.4e-92 342.0 355 47.9
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 9.3e-92 341.3 357 47.3
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.6e-91 340.5 360 47.5
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 2.1e-91 340.1 357 46.8
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 2.1e-91 340.1 357 47.3
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 3.5e-91 339.3 355 47.6
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 4.6e-91 339.0 357 47.6
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 6.0e-91 338.6 357 47.9
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 1.0e-90 337.8 354 47.5
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 1.8e-90 337.0 355 47.6
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 2.3e-90 336.7 359 46.2
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 2.3e-90 336.7 359 46.2
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 3.0e-90 336.3 358 47.2
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 3.9e-90 335.9 354 47.7
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 5.1e-90 335.5 360 52.5
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 6.7e-90 335.1 354 46.6
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 6.7e-90 335.1 355 50.1
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 6.7e-90 335.1 358 47.5
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 6.7e-90 335.1 355 47.9
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 8.7e-90 334.7 355 47.6
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 8.7e-90 334.7 357 46.8
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 8.7e-90 334.7 360 47.5
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 1.9e-89 333.6 355 47.6
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 3.3e-89 332.8 355 46.2
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 5.6e-89 332.0 359 46.2
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 7.4e-89 331.6 390 45.4
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.3e-88 330.9 346 50.0
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 2.1e-88 330.1 355 47.0
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 3.7e-88 329.3 355 47.0
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 4.8e-88 328.9 354 46.9
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 4.8e-88 328.9 355 47.6
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 6.2e-88 328.6 361 46.5
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 1.1e-87 327.8 358 46.4
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.4e-87 327.4 356 48.3
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.4e-87 327.4 356 48.3
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 1.8e-87 327.0 356 46.1
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 2.4e-87 326.6 355 47.6
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 6.9e-87 325.1 357 47.3
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 3.4e-86 322.8 358 46.4
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 5.8e-86 322.0 356 46.6
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 9.9e-86 321.2 355 46.2
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 2.2e-85 320.1 355 45.1
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 3.8e-85 319.3 361 46.0
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 3.8e-85 319.3 360 46.4
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 2.4e-84 316.6 355 46.5
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 4.2e-84 315.8 357 45.9
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 5.5e-84 315.5 392 43.6
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 5.5e-84 315.5 362 45.0
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 5.5e-84 315.5 360 46.9
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 7.1e-84 315.1 354 48.0
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 9.3e-84 314.7 360 45.6
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 9.3e-84 314.7 360 45.8
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 9.3e-84 314.7 365 47.1
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.2e-83 314.3 360 47.2
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 4.6e-83 312.4 355 46.2
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 1.0e-82 311.2 354 46.9
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 5.1e-82 308.9 354 46.3
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 8.7e-82 308.1 357 42.9
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 2.5e-81 306.6 360 45.6
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 3.3e-81 306.2 360 45.8
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 5.6e-81 305.4 317 46.7
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 5.6e-81 305.4 353 45.6
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 2.1e-80 303.5 356 44.4
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 4.8e-80 302.4 359 44.0
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 9.0e-79 298.1 361 45.2
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.2e-78 297.7 345 45.5
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 2.0e-78 297.0 355 45.6
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 3.4e-78 296.2 361 44.3
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.1e-76 291.2 361 44.0
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 4.2e-76 289.3 346 45.4
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 1.8e-74 283.9 355 45.9
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 6.7e-74 282.0 376 42.6
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 1.1e-73 281.2 360 41.1
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.5e-73 280.8 360 42.5
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 2.5e-73 280.0 372 41.9
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 2.8e-72 276.6 360 39.7
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 3.2e-68 263.1 363 39.9
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 8.8e-66 255.0 480 35.8
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 3.3e-65 253.1 250 49.6
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 9.1e-63 245.0 255 48.6
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 2.1e-59 233.8 250 47.6
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 2.1e-59 233.8 259 48.6
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 5.1e-58 229.2 359 36.5
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 1.7e-53 214.2 203 49.8
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 1.4e-50 204.5 299 38.5
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.2e-46 191.4 357 34.5
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 3.5e-46 189.9 198 51.0
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.8e-39 167.5 358 33.2
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 7.0e-39 165.6 404 33.2
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 4.2e-28 129.8 147 44.2
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 2.1e-27 127.5 145 45.5
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 3.5e-22 110.2 117 49.6
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 7.8e-22 109.0 181 36.5
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 5.2e-18 96.3 102 43.1
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.5e-17 94.7 105 41.9
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 2.4e-15 87.4 90 50.0
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 2.3e-13 80.9 89 41.6
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 9.5e-12 75.5 155 32.9
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 2.8e-11 73.9 100 40.0
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 4.0e-10 70.1 125 37.6
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 4.4e-09 66.6 92 39.1
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 7.5e-09 65.9 160 31.9
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 7.5e-09 65.9 160 31.9
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 2.9e-08 63.9 94 41.5
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 4.9e-08 63.2 90 37.8
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 3.2e-07 60.5 131 30.5


User provided reference genes

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