Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 6.0e-132 474.2 239 100.0
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 4.9e-41 172.2 243 44.9
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 7.8e-39 164.9 238 43.7
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 8.7e-30 134.8 92 70.7
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 1.9e-29 133.7 101 63.4
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 1.9e-29 133.7 169 46.7
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.5e-29 133.3 137 51.8
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 3.3e-29 132.9 90 72.2
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 4.3e-29 132.5 123 57.7
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 7.4e-29 131.7 144 47.9
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 9.6e-29 131.3 91 70.3
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 9.6e-29 131.3 90 71.1
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.3e-28 131.0 160 48.1
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.3e-28 131.0 160 48.1
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 1.6e-28 130.6 138 51.4
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 1.6e-28 130.6 122 59.0
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.6e-28 130.6 122 54.1
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.6e-28 130.6 137 51.1
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 2.1e-28 130.2 172 45.3
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.1e-28 130.2 160 48.1
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 2.1e-28 130.2 137 51.8
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 3.7e-28 129.4 90 65.6
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 3.7e-28 129.4 90 65.6
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 3.7e-28 129.4 90 66.7
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 4.8e-28 129.0 136 51.5
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 4.8e-28 129.0 92 66.3
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 6.2e-28 128.6 134 53.7
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 6.2e-28 128.6 160 47.5
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 8.1e-28 128.3 89 66.3
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 8.1e-28 128.3 113 60.2
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 1.1e-27 127.9 90 68.9
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 1.1e-27 127.9 100 59.0
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 1.4e-27 127.5 90 65.6
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.4e-27 127.5 160 48.8
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 1.4e-27 127.5 139 53.2
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 1.4e-27 127.5 147 49.7
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.4e-27 126.7 127 55.1
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 2.4e-27 126.7 89 65.2
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.1e-27 126.3 92 66.3
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.1e-27 126.3 90 66.7
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 3.1e-27 126.3 133 54.1
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 3.1e-27 126.3 119 57.1
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 4.0e-27 125.9 121 55.4
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 4.0e-27 125.9 143 51.7
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 4.0e-27 125.9 139 51.8
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 5.3e-27 125.6 89 67.4
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 5.3e-27 125.6 119 54.6
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 5.3e-27 125.6 120 55.0
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 5.3e-27 125.6 120 55.0
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 5.3e-27 125.6 116 56.9
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 5.3e-27 125.6 128 52.3
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 5.3e-27 125.6 128 52.3
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 6.9e-27 125.2 90 67.8
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 6.9e-27 125.2 181 43.6
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 6.9e-27 125.2 121 53.7
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 6.9e-27 125.2 233 41.2
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 9.0e-27 124.8 144 47.2
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 9.0e-27 124.8 88 67.0
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 9.0e-27 124.8 121 52.9
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 9.0e-27 124.8 131 51.9
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 9.0e-27 124.8 137 50.4
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 9.0e-27 124.8 139 51.8
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 1.2e-26 124.4 89 64.0
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 1.2e-26 124.4 100 59.0
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 1.5e-26 124.0 118 55.1
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 1.5e-26 124.0 118 55.1
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 1.5e-26 124.0 167 46.1
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 1.5e-26 124.0 145 51.7
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 1.5e-26 124.0 138 50.0
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.5e-26 124.0 89 65.2
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 2.0e-26 123.6 90 65.6
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 2.0e-26 123.6 90 62.2
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 2.0e-26 123.6 90 65.6
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 2.6e-26 123.2 137 49.6
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 2.6e-26 123.2 118 53.4
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 2.6e-26 123.2 131 48.9
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 3.4e-26 122.9 93 64.5
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 4.5e-26 122.5 118 55.1
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 4.5e-26 122.5 141 48.9
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 5.8e-26 122.1 121 53.7
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 5.8e-26 122.1 139 51.8
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 5.8e-26 122.1 92 62.0
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 5.8e-26 122.1 140 50.7
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 7.6e-26 121.7 136 47.8
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 9.9e-26 121.3 141 49.6
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 9.9e-26 121.3 130 53.1
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 1.3e-25 120.9 119 52.1
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 1.3e-25 120.9 94 62.8
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 1.7e-25 120.6 121 52.9
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.7e-25 120.6 93 63.4
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.7e-25 120.6 88 60.2
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.7e-25 120.6 134 50.0
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.7e-25 120.6 104 58.7
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 2.2e-25 120.2 144 45.8
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 2.9e-25 119.8 134 50.0
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 4.9e-25 119.0 120 54.2
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 4.9e-25 119.0 88 64.8
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 6.4e-25 118.6 92 62.0
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 6.4e-25 118.6 136 48.5
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 6.4e-25 118.6 89 61.8
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 6.4e-25 118.6 139 49.6
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 6.4e-25 118.6 90 66.7
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 8.4e-25 118.2 119 52.9
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 8.4e-25 118.2 119 52.9
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 8.4e-25 118.2 97 57.7
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.1e-24 117.9 191 41.4
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.4e-24 117.5 94 59.6
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 1.4e-24 117.5 92 64.1
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.9e-24 117.1 89 65.2
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.9e-24 117.1 124 51.6
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 2.4e-24 116.7 216 40.3
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 4.2e-24 115.9 88 59.1
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 7.1e-24 115.2 88 59.1
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 7.1e-24 115.2 88 59.1
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.2e-23 114.4 98 63.3
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 1.6e-23 114.0 89 59.6
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.6e-23 114.0 88 58.0
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 2.1e-23 113.6 88 58.0
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 7.9e-23 111.7 140 47.9
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.8e-22 110.5 108 54.6
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 2.3e-22 110.2 88 54.5
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 2.3e-22 110.2 88 54.5
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 2.3e-22 110.2 88 54.5
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 2.3e-22 110.2 107 54.2
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 2.3e-22 110.2 94 57.4
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 2.3e-22 110.2 104 58.7
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 3.9e-22 109.4 88 55.7
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 3.9e-22 109.4 88 55.7
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 6.7e-22 108.6 139 44.6
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 4.3e-21 105.9 122 46.7
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 4.3e-21 105.9 122 46.7
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 9.6e-21 104.8 127 48.0
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 9.6e-21 104.8 95 50.5
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 3.7e-20 102.8 130 44.6
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 4.8e-20 102.4 168 40.5
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 1.1e-19 101.3 130 46.9
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.4e-19 100.9 132 43.9
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.8e-19 100.5 149 44.3
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.8e-19 100.5 149 44.3
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 2.4e-19 100.1 147 40.1
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 3.1e-19 99.8 149 43.0
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.2e-18 97.8 200 35.0
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.0e-17 94.7 123 43.9
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.2e-16 89.7 119 44.5
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 1.6e-15 87.4 130 45.4
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 3.5e-15 86.3 70 58.6
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.3e-14 84.3 119 44.5
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 4.3e-13 79.3 62 56.5
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.8e-11 73.9 157 34.4
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 3.1e-11 73.2 85 44.7
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 6.9e-11 72.0 84 50.0
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 6.9e-11 72.0 46 67.4
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 9.0e-11 71.6 270 25.6
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.1e-08 64.7 47 61.7
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 2.5e-08 63.5 54 51.9
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.2e-08 62.8 75 45.3
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 7.2e-08 62.0 56 55.4
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 7.2e-08 62.0 49 61.2
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 9.4e-08 61.6 72 43.1
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 9.4e-08 61.6 49 57.1
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 1.2e-07 61.2 44 70.5
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 3.6e-07 59.7 39 61.5
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 3.6e-07 59.7 95 37.9
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 4.6e-07 59.3 44 68.2
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 4.6e-07 59.3 44 68.2


User provided reference genes

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