Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 1.1e-284 982.6 513 100.0
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.5e-103 380.9 510 43.7
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 8.5e-99 365.2 525 44.0
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.4e-93 347.1 335 51.9
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.7e-91 340.9 312 54.2
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.0e-83 315.1 308 51.9
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.8e-83 313.2 297 54.2
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 1.4e-80 304.7 461 38.4
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.6e-76 291.2 391 42.2
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.5e-74 283.9 321 47.7
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 4.7e-73 279.6 455 36.9
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 2.3e-72 277.3 508 38.2
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 1.2e-71 275.0 418 39.7
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 1.7e-70 271.2 388 41.2
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.7e-70 271.2 383 41.3
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 7.0e-69 265.8 458 38.2
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 1.0e-67 261.9 368 41.0
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 1.3e-67 261.5 369 39.6
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 1.3e-67 261.5 392 40.1
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 2.9e-67 260.4 447 36.9
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.9e-67 260.4 405 38.8
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 3.8e-67 260.0 319 46.1
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 5.0e-67 259.6 430 37.7
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.1e-66 258.5 465 36.1
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 1.5e-66 258.1 470 37.2
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.3e-66 256.9 375 38.9
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.3e-66 256.9 375 38.9
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 4.3e-66 256.5 370 39.5
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 4.3e-66 256.5 415 38.8
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 7.3e-66 255.8 396 39.9
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 7.3e-66 255.8 452 36.3
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.6e-65 254.6 431 37.6
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.6e-65 254.6 431 37.6
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.1e-65 254.2 490 35.1
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 2.8e-65 253.8 444 38.7
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 3.6e-65 253.4 463 35.6
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 3.6e-65 253.4 422 39.6
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 4.7e-65 253.1 490 34.3
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 8.0e-65 252.3 437 38.0
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 1.0e-64 251.9 372 38.4
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.0e-64 251.9 398 40.5
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 1.0e-64 251.9 458 36.5
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 2.3e-64 250.8 442 34.2
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 4.0e-64 250.0 364 40.1
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 6.8e-64 249.2 429 37.8
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.2e-63 248.4 457 33.9
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 1.2e-63 248.4 386 38.1
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 1.2e-63 248.4 411 36.7
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.2e-63 248.4 328 44.2
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.5e-63 248.1 380 40.5
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 3.4e-63 246.9 390 36.9
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 4.4e-63 246.5 429 37.8
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 4.4e-63 246.5 390 37.4
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 5.7e-63 246.1 321 43.0
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 5.7e-63 246.1 391 38.6
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 1.7e-62 244.6 440 36.1
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.7e-62 244.6 393 39.2
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 3.7e-62 243.4 313 45.7
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 4.9e-62 243.0 416 36.5
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 6.4e-62 242.7 443 38.4
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 8.3e-62 242.3 325 44.6
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 1.4e-61 241.5 456 36.6
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.8e-61 241.1 366 40.2
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.4e-61 240.7 430 35.8
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 3.2e-61 240.4 315 42.2
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 3.2e-61 240.4 314 42.4
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 5.4e-61 239.6 315 42.5
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 5.4e-61 239.6 325 43.7
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 5.4e-61 239.6 311 45.7
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 7.0e-61 239.2 462 36.1
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 1.2e-60 238.4 450 36.2
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 1.6e-60 238.0 397 38.5
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.7e-60 237.3 459 33.6
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 2.7e-60 237.3 457 36.8
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 2.7e-60 237.3 395 37.2
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 4.6e-60 236.5 314 45.2
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 4.6e-60 236.5 441 35.1
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 4.6e-60 236.5 369 37.9
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 5.9e-60 236.1 315 41.6
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 7.8e-60 235.7 310 43.2
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 1.0e-59 235.3 321 43.0
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 1.0e-59 235.3 321 41.7
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.3e-59 235.0 457 37.0
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 1.7e-59 234.6 331 40.8
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 1.7e-59 234.6 457 35.4
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.7e-59 234.6 318 42.1
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 1.7e-59 234.6 351 40.2
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 1.7e-59 234.6 321 42.1
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.3e-59 234.2 457 36.5
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.0e-59 233.8 459 35.7
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 3.9e-59 233.4 494 35.2
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 5.0e-59 233.0 318 41.8
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 6.6e-59 232.6 461 34.7
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 6.6e-59 232.6 487 35.1
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 6.6e-59 232.6 396 37.1
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.9e-58 231.1 457 35.0
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.9e-58 231.1 446 35.4
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.3e-58 230.3 311 40.5
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 4.3e-58 229.9 318 41.2
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 5.6e-58 229.6 397 35.0
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 7.3e-58 229.2 491 34.6
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 9.5e-58 228.8 400 37.0
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 9.5e-58 228.8 393 35.1
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.2e-57 228.4 459 35.3
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.2e-57 228.4 402 36.8
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.2e-57 228.4 315 40.0
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 1.6e-57 228.0 398 34.7
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 3.6e-57 226.9 391 35.5
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 3.6e-57 226.9 336 37.8
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 6.2e-57 226.1 347 37.8
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 6.2e-57 226.1 449 35.0
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 8.0e-57 225.7 451 33.9
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 1.4e-56 224.9 500 34.8
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.8e-56 224.6 372 36.8
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 2.3e-56 224.2 334 39.5
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 8.9e-56 222.2 311 42.4
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 8.9e-56 222.2 311 41.2
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 8.9e-56 222.2 470 34.5
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.5e-55 221.5 399 34.8
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.5e-55 221.5 399 34.8
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 2.0e-55 221.1 308 40.3
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 7.5e-55 219.2 312 41.0
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 7.5e-55 219.2 317 39.4
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.3e-54 218.4 438 34.2
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 1.3e-54 218.4 460 34.6
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 6.4e-54 216.1 455 33.2
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 8.3e-54 215.7 329 38.0
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 8.3e-54 215.7 442 32.8
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 1.1e-53 215.3 423 34.5
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 1.9e-53 214.5 355 36.9
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 5.4e-53 213.0 318 40.3
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 7.0e-53 212.6 286 42.0
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 7.0e-53 212.6 408 34.6
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 3.5e-52 210.3 556 29.1
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 7.8e-52 209.1 317 37.9
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 5.0e-51 206.5 324 38.6
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 6.6e-51 206.1 324 38.3
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.1e-50 205.3 317 38.2
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 4.3e-50 203.4 318 37.4
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 6.8e-48 196.1 422 34.1
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 6.8e-48 196.1 454 31.9
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 9.8e-47 192.2 547 29.6
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 3.7e-46 190.3 210 50.0
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 1.1e-45 188.7 212 48.1
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 9.2e-45 185.7 322 36.3
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 4.6e-44 183.3 269 39.0
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.3e-43 181.8 348 35.9
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 3.9e-43 180.3 304 38.2
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 2.1e-41 174.5 315 38.4
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 1.7e-38 164.9 202 45.0
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 2.3e-35 154.5 348 34.5
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 2.3e-35 154.5 137 55.5
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 3.0e-35 154.1 208 41.3
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.1e-34 152.1 330 33.3
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 1.1e-32 145.6 235 40.0
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.4e-32 145.2 216 37.5
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 4.0e-32 143.7 275 33.8
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.0e-31 141.4 444 28.2
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 3.8e-30 137.1 267 34.8
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 8.7e-27 125.9 140 45.0
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 3.3e-26 124.0 277 29.2
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 1.1e-24 119.0 422 28.7
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 1.4e-24 118.6 289 30.8
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 5.3e-24 116.7 200 36.5
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 9.0e-24 115.9 204 38.2
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 2.0e-23 114.8 194 37.1
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 7.1e-21 106.3 231 36.8
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 2.1e-20 104.8 366 25.7
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 6.9e-16 89.7 105 44.8
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.2e-14 84.7 94 45.7
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.4e-13 82.0 178 33.1
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 7.4e-10 69.7 64 46.9
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.6e-09 68.6 67 47.8
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 2.8e-09 67.8 77 44.2
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 9.0e-08 62.8 82 43.9


User provided reference genes

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