Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 5.9e-202 707.2 335 100.0
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 9.2e-70 268.1 320 45.0
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 4.6e-69 265.8 175 65.7
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 4.6e-69 265.8 175 65.7
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 2.2e-63 246.9 239 49.0
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 2.7e-61 240.0 187 56.7
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 2.7e-61 240.0 187 56.7
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 6.0e-61 238.8 187 55.6
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 1.0e-60 238.0 176 56.8
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 3.0e-60 236.5 182 58.2
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 1.9e-59 233.8 184 56.0
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 2.5e-59 233.4 180 56.1
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 4.3e-59 232.6 186 52.7
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 5.6e-59 232.3 181 53.0
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 7.3e-59 231.9 179 55.3
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.2e-58 231.1 174 57.5
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 2.1e-58 230.3 190 53.2
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 2.8e-58 229.9 187 54.0
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 2.8e-58 229.9 187 54.0
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 8.1e-58 228.4 180 55.6
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 1.4e-57 227.6 179 54.7
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 1.4e-57 227.6 180 56.1
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 1.8e-57 227.3 184 53.8
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.8e-57 227.3 173 57.2
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 1.8e-57 227.3 184 53.8
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.8e-57 227.3 181 51.9
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.8e-57 227.3 181 51.9
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 3.1e-57 226.5 184 53.8
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 4.0e-57 226.1 184 52.7
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 4.0e-57 226.1 180 53.9
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 4.0e-57 226.1 187 54.0
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 5.2e-57 225.7 174 55.7
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 5.2e-57 225.7 174 55.7
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 6.9e-57 225.3 174 54.6
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 1.2e-56 224.6 179 52.5
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 2.0e-56 223.8 182 53.8
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 2.0e-56 223.8 184 52.7
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 2.6e-56 223.4 184 53.3
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 2.6e-56 223.4 184 53.3
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 2.6e-56 223.4 171 55.6
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 3.4e-56 223.0 184 53.3
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 3.4e-56 223.0 182 53.3
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 4.4e-56 222.6 184 52.7
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 5.8e-56 222.2 180 55.0
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 7.6e-56 221.9 179 54.2
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 7.6e-56 221.9 174 54.0
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 7.6e-56 221.9 184 53.3
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 9.9e-56 221.5 180 51.1
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 1.3e-55 221.1 181 50.8
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 2.2e-55 220.3 200 48.5
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.2e-55 220.3 173 56.1
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 2.2e-55 220.3 174 55.2
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 2.2e-55 220.3 183 53.6
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 3.8e-55 219.5 179 53.6
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 4.9e-55 219.2 173 52.6
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 4.9e-55 219.2 177 54.2
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.4e-55 218.4 177 52.0
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.4e-55 218.4 177 52.5
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.4e-55 218.4 177 52.0
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 8.4e-55 218.4 184 53.3
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 1.1e-54 218.0 177 52.0
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 1.4e-54 217.6 176 52.3
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 1.9e-54 217.2 174 51.1
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.9e-54 217.2 177 52.0
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 2.4e-54 216.9 177 53.7
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 2.4e-54 216.9 169 53.8
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 3.2e-54 216.5 193 49.7
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 4.2e-54 216.1 186 50.5
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 4.2e-54 216.1 186 50.5
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 4.2e-54 216.1 180 50.6
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 5.4e-54 215.7 177 51.4
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.2e-53 214.5 173 54.3
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.2e-53 214.5 173 54.3
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 1.6e-53 214.2 176 52.3
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 1.6e-53 214.2 199 47.7
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 2.1e-53 213.8 174 53.4
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 2.7e-53 213.4 174 52.9
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 2.7e-53 213.4 184 51.6
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 3.5e-53 213.0 184 51.6
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 4.6e-53 212.6 173 50.9
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.0e-53 212.2 174 51.7
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 6.0e-53 212.2 176 52.3
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 7.8e-53 211.8 209 45.9
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 7.8e-53 211.8 180 52.8
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 1.0e-52 211.5 174 52.9
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 1.0e-52 211.5 174 51.7
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 1.0e-52 211.5 163 56.4
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 1.3e-52 211.1 174 50.6
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 1.3e-52 211.1 199 50.3
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.3e-52 211.1 179 50.3
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 1.3e-52 211.1 176 51.7
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 1.7e-52 210.7 174 51.7
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 1.7e-52 210.7 176 51.7
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 2.3e-52 210.3 187 48.1
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 2.3e-52 210.3 179 51.4
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.3e-52 210.3 184 51.1
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 5.1e-52 209.1 174 51.1
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 5.1e-52 209.1 174 51.1
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 8.7e-52 208.4 179 51.4
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 1.5e-51 207.6 174 50.6
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 1.5e-51 207.6 174 50.6
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.5e-51 207.6 179 50.8
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 2.5e-51 206.8 175 50.9
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 3.3e-51 206.5 174 50.0
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 7.3e-51 205.3 174 50.0
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 2.8e-50 203.4 155 56.1
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 2.8e-50 203.4 122 71.3
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 3.1e-49 199.9 196 48.0
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.9e-49 198.7 162 52.5
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.4e-48 196.4 200 45.5
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 7.6e-48 195.3 152 53.9
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 2.2e-47 193.7 152 53.9
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 1.4e-46 191.0 151 51.7
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 1.9e-46 190.7 161 49.1
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.2e-46 189.9 221 41.6
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 4.2e-46 189.5 221 41.2
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 9.3e-46 188.3 143 55.2
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 1.2e-45 188.0 155 52.3
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 2.7e-45 186.8 151 51.0
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 7.9e-45 185.3 191 42.9
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 3.0e-44 183.3 146 54.8
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 6.7e-44 182.2 148 52.7
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 4.3e-43 179.5 182 42.9
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 1.6e-42 177.6 142 52.1
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 1.4e-41 174.5 134 56.0
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 1.2e-40 171.4 184 42.9
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 2.6e-40 170.2 188 42.6
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 4.9e-39 166.0 183 43.7
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 1.9e-38 164.1 276 32.2
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 3.5e-37 159.8 170 41.8
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 1.8e-36 157.5 190 42.1
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.9e-36 156.4 118 55.1
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 1.3e-31 141.4 176 38.6
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 2.2e-31 140.6 195 36.9
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 3.8e-31 139.8 91 62.6
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 3.5e-29 133.3 164 37.2
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 4.3e-27 126.3 93 57.0
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.7e-26 123.2 91 54.9
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 3.4e-24 116.7 183 36.1
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 9.4e-22 108.6 104 48.1
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 9.4e-22 108.6 133 40.6
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 2.6e-16 90.5 90 43.3


User provided reference genes

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