Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0146s0027 Marchantia polymorpha HOM05D003659 ORTHO05D004298 1.2e-129 466.5 221 100.0
Pp3c12_21450 Physcomitrium patens HOM05D003659 ORTHO05D004298 3.1e-82 308.9 214 67.8
Hund00440 Selenicereus undatus HOM05D003659 ORTHO05D004298 3.1e-82 308.9 219 66.7
Pp3c4_7140 Physcomitrium patens HOM05D003659 ORTHO05D004298 1.2e-81 307.0 208 67.8
SEGI_01700 Sequoiadendron giganteum HOM05D003659 ORTHO05D004298 5.9e-81 304.7 207 63.8
HPP92_004679 Vanilla planifolia HOM05D003659 ORTHO05D004298 5.0e-80 301.6 211 64.5
Nn2g12325 Nelumbo nucifera HOM05D003659 ORTHO05D004298 1.1e-79 300.4 218 63.3
Hund06525 Selenicereus undatus HOM05D003659 ORTHO05D004298 1.1e-79 300.4 218 65.1
Atru.chr7.2534 Acer truncatum HOM05D003659 ORTHO05D004298 2.5e-79 299.3 211 61.6
Cfa013072 Carpinus fangiana HOM05D003659 ORTHO05D004298 2.5e-79 299.3 211 62.1
Lj5A80T55 Lonicera japonica HOM05D003659 ORTHO05D004298 3.2e-79 298.9 211 64.9
PGR044G1948 Punica granatum HOM05D003659 ORTHO05D004298 3.2e-79 298.9 211 63.0
Sp4g04120 Schrenkiella parvula HOM05D003659 ORTHO05D004298 4.2e-79 298.5 219 63.0
AUR62026991 Chenopodium quinoa HOM05D003659 ORTHO05D004298 7.2e-79 297.7 218 64.7
AUR62030831 Chenopodium quinoa HOM05D003659 ORTHO05D004298 7.2e-79 297.7 218 62.8
TWI32G0040 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 1.2e-78 297.0 212 63.7
AT2G25110 Arabidopsis thaliana HOM05D003659 ORTHO05D004298 1.6e-78 296.6 219 63.0
CARHR116580 Cardamine hirsuta HOM05D003659 ORTHO05D004298 1.6e-78 296.6 213 64.8
Nn8g39829 Nelumbo nucifera HOM05D003659 ORTHO05D004298 1.6e-78 296.6 218 64.2
BolC8t51458H Brassica oleracea HOM05D003659 ORTHO05D004298 2.1e-78 296.2 214 64.5
CiPaw.08G006800 Carya illinoinensis HOM05D003659 ORTHO05D004298 2.1e-78 296.2 211 62.1
Eucgr.C02663 Eucalyptus grandis HOM05D003659 ORTHO05D004298 2.1e-78 296.2 211 60.7
RcHm_v2.0_Chr6g0299581 Rosa chinensis HOM05D003659 ORTHO05D004298 2.7e-78 295.8 211 64.0
Carub.0004s0471 Capsella rubella HOM05D003659 ORTHO05D004298 3.6e-78 295.4 219 62.6
Dinv23291 Davidia involucrata HOM05D003659 ORTHO05D004298 3.6e-78 295.4 214 62.6
Actinidia08946 Actinidia chinensis HOM05D003659 ORTHO05D004298 4.6e-78 295.0 211 63.0
AL4G16270 Arabidopsis lyrata HOM05D003659 ORTHO05D004298 4.6e-78 295.0 219 62.6
Glyma.06G062900 Glycine max HOM05D003659 ORTHO05D004298 4.6e-78 295.0 211 61.6
BcaB06g28036 Brassica carinata HOM05D003659 ORTHO05D004298 6.1e-78 294.7 220 62.3
ClCG05G016430 Citrullus lanatus HOM05D003659 ORTHO05D004298 6.1e-78 294.7 211 62.1
Lalb_Chr23g0268261 Lupinus albus HOM05D003659 ORTHO05D004298 6.1e-78 294.7 213 63.4
Manes.03G010100 Manihot esculenta HOM05D003659 ORTHO05D004298 6.1e-78 294.7 211 60.2
Aqoxy7G01595 Aquilegia oxysepala HOM05D003659 ORTHO05D004298 7.9e-78 294.3 213 62.9
A04p19520 Brassica napus HOM05D003659 ORTHO05D004298 7.9e-78 294.3 219 62.1
BraA04t17546Z Brassica rapa HOM05D003659 ORTHO05D004298 7.9e-78 294.3 219 62.1
CSS0027457 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 7.9e-78 294.3 208 62.5
CSS0033149 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 7.9e-78 294.3 208 62.5
C04p55110 Brassica napus HOM05D003659 ORTHO05D004298 1.0e-77 293.9 217 61.3
BolC4t27050H Brassica oleracea HOM05D003659 ORTHO05D004298 1.0e-77 293.9 217 61.3
Lsat_1_v5_gn_5_8201 Lactuca sativa HOM05D003659 ORTHO05D004298 1.0e-77 293.9 221 60.6
THA.LOC104803632 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 1.0e-77 293.9 208 62.5
Cc04_g05030 Coffea canephora HOM05D003659 ORTHO05D004298 1.4e-77 293.5 192 67.7
Thhalv10000317m.g Eutrema salsugineum HOM05D003659 ORTHO05D004298 1.4e-77 293.5 217 60.8
PSO017G1057 Papaver somniferum HOM05D003659 ORTHO05D004298 1.4e-77 293.5 221 60.2
Migut.I00701 Erythranthe guttata HOM05D003659 ORTHO05D004298 1.8e-77 293.1 190 68.9
BcaC02g08370 Brassica carinata HOM05D003659 ORTHO05D004298 2.3e-77 292.7 217 60.8
MSTRG.22794 Avicennia marina HOM05D003659 ORTHO05D004298 3.0e-77 292.4 211 61.1
PSO170G6877 Papaver somniferum HOM05D003659 ORTHO05D004298 3.0e-77 292.4 221 60.2
HanXRQChr04g0098481 Helianthus annuus HOM05D003659 ORTHO05D004298 3.9e-77 292.0 185 67.6
TWI34G1103 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 3.9e-77 292.0 219 60.3
Ciclev10009450m.g Citrus clementina HOM05D003659 ORTHO05D004298 5.1e-77 291.6 211 60.7
DCAR_021366 Daucus carota HOM05D003659 ORTHO05D004298 5.1e-77 291.6 214 62.1
Lj9A494G39 Lonicera japonica HOM05D003659 ORTHO05D004298 5.1e-77 291.6 187 68.4
Aa31LG7G12130 Aethionema arabicum HOM05D003659 ORTHO05D004298 6.7e-77 291.2 217 62.2
ECA247G2368 Erigeron canadensis HOM05D003659 ORTHO05D004298 6.7e-77 291.2 213 61.0
Prupe.1G392400 Prunus persica HOM05D003659 ORTHO05D004298 6.7e-77 291.2 209 63.2
GSVIVG01034217001 Vitis vinifera HOM05D003659 ORTHO05D004298 8.8e-77 290.8 211 61.1
Actinidia25461 Actinidia chinensis HOM05D003659 ORTHO05D004298 1.1e-76 290.4 211 62.1
MSTRG.9405 Avicennia marina HOM05D003659 ORTHO05D004298 1.1e-76 290.4 184 67.9
CsaV3_4G036690 Cucumis sativus L. HOM05D003659 ORTHO05D004298 1.1e-76 290.4 187 67.4
FAN27G2887 Fragaria x ananassa HOM05D003659 ORTHO05D004298 1.1e-76 290.4 211 62.6
Oeu060128.1 Olea europaea HOM05D003659 ORTHO05D004298 1.1e-76 290.4 184 67.4
Gohir.A05G058400 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.5e-76 290.0 177 69.5
QL02p019557 Quercus lobata HOM05D003659 ORTHO05D004298 1.5e-76 290.0 212 61.8
Gohir.D05G060500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 2.0e-76 289.7 177 68.9
Gorai.009G061600 Gossypium raimondii HOM05D003659 ORTHO05D004298 2.0e-76 289.7 177 68.9
Manes.16G128300 Manihot esculenta HOM05D003659 ORTHO05D004298 2.0e-76 289.7 214 60.3
Zm00001eb179820 Zea mays HOM05D003659 ORTHO05D004298 2.0e-76 289.7 208 62.5
FvH4_2g40990 Fragaria vesca HOM05D003659 ORTHO05D004298 2.6e-76 289.3 211 63.5
Sabra06G0205400 Salix brachista HOM05D003659 ORTHO05D004298 2.6e-76 289.3 211 59.7
Duzib168G1659 Durio zibethinus HOM05D003659 ORTHO05D004298 3.3e-76 288.9 177 68.9
FAN20G3050 Fragaria x ananassa HOM05D003659 ORTHO05D004298 3.3e-76 288.9 211 62.6
Zm00001eb041170 Zea mays HOM05D003659 ORTHO05D004298 3.3e-76 288.9 208 63.0
A09p55870 Brassica napus HOM05D003659 ORTHO05D004298 4.3e-76 288.5 184 69.6
BraA09t40990Z Brassica rapa HOM05D003659 ORTHO05D004298 4.3e-76 288.5 184 69.6
Duzib150G0849 Durio zibethinus HOM05D003659 ORTHO05D004298 4.3e-76 288.5 177 68.9
vmacro19047 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 4.3e-76 288.5 187 67.9
BcaC07g40890 Brassica carinata HOM05D003659 ORTHO05D004298 5.7e-76 288.1 184 69.6
C08p38860 Brassica napus HOM05D003659 ORTHO05D004298 5.7e-76 288.1 184 69.6
MELO3C016972.2 Cucumis melo HOM05D003659 ORTHO05D004298 5.7e-76 288.1 183 67.2
HanXRQChr05g0153781 Helianthus annuus HOM05D003659 ORTHO05D004298 5.7e-76 288.1 197 64.5
Potri.006G263200 Populus trichocarpa HOM05D003659 ORTHO05D004298 5.7e-76 288.1 211 59.7
SMO340G0294 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 5.7e-76 288.1 177 73.4
Gorai.001G037100 Gossypium raimondii HOM05D003659 ORTHO05D004298 7.4e-76 287.7 177 68.9
Gohir.D07G035300 Gossypium hirsutum HOM05D003659 ORTHO05D004298 9.7e-76 287.3 177 68.9
EL10Ac9g22216 Beta vulgaris HOM05D003659 ORTHO05D004298 1.3e-75 287.0 216 62.5
ECA246G1998 Erigeron canadensis HOM05D003659 ORTHO05D004298 1.7e-75 286.6 197 63.5
Gohir.A07G031500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.7e-75 286.6 177 68.9
MD15G1038400 Malus domestica HOM05D003659 ORTHO05D004298 1.7e-75 286.6 187 67.4
Oeu027829.1 Olea europaea HOM05D003659 ORTHO05D004298 1.7e-75 286.6 185 67.0
Rhsim08G0207200 Rhododendron simsii HOM05D003659 ORTHO05D004298 1.7e-75 286.6 184 68.5
CAN.G407.57 Capsicum annuum HOM05D003659 ORTHO05D004298 2.2e-75 286.2 184 67.9
Lalb_Chr08g0244391 Lupinus albus HOM05D003659 ORTHO05D004298 2.2e-75 286.2 177 70.1
GSVIVG01035892001 Vitis vinifera HOM05D003659 ORTHO05D004298 2.8e-75 285.8 211 60.7
Actinidia18243 Actinidia chinensis HOM05D003659 ORTHO05D004298 3.7e-75 285.4 211 60.7
TAR625G1310 Trochodendron aralioides HOM05D003659 ORTHO05D004298 4.8e-75 285.0 183 66.1
Glyma.04G061900 Glycine max HOM05D003659 ORTHO05D004298 6.3e-75 284.6 177 68.4
HanXRQChr08g0235851 Helianthus annuus HOM05D003659 ORTHO05D004298 6.3e-75 284.6 221 58.4
arahy.Tifrunner.gnm1.ann1.48QDBJ Arachis hypogaea HOM05D003659 ORTHO05D004298 8.2e-75 284.3 182 68.7
arahy.Tifrunner.gnm1.ann1.85LDPV Arachis hypogaea HOM05D003659 ORTHO05D004298 8.2e-75 284.3 182 68.7
Lsat_1_v5_gn_1_32141 Lactuca sativa HOM05D003659 ORTHO05D004298 8.2e-75 284.3 211 59.2
Potri.018G020700 Populus trichocarpa HOM05D003659 ORTHO05D004298 8.2e-75 284.3 177 68.9
SHI18485 Sapria himalayana HOM05D003659 ORTHO05D004298 8.2e-75 284.3 188 66.5
CDE05G0949 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 1.1e-74 283.9 183 68.3
Os08g0440500 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 1.1e-74 283.9 208 62.0
Ah.01g006880 Amaranthus hybridus HOM05D003659 ORTHO05D004298 1.4e-74 283.5 251 55.8
TAR625G1087 Trochodendron aralioides HOM05D003659 ORTHO05D004298 1.4e-74 283.5 180 66.7
ATR0739G101 Amborella trichopoda HOM05D003659 ORTHO05D004298 1.8e-74 283.1 211 60.2
CSS0004565 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.8e-74 283.1 183 66.1
CSS0014874 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.8e-74 283.1 183 66.1
DCAR_025575 Daucus carota HOM05D003659 ORTHO05D004298 1.8e-74 283.1 211 61.6
Migut.D01114 Erythranthe guttata HOM05D003659 ORTHO05D004298 1.8e-74 283.1 184 66.3
Lj1g0004529 Lotus japonicus HOM05D003659 ORTHO05D004298 1.8e-74 283.1 177 68.4
Solyc03g117020.4 Solanum lycopersicum HOM05D003659 ORTHO05D004298 1.8e-74 283.1 217 59.9
Sopen03g035920 Solanum pennellii HOM05D003659 ORTHO05D004298 1.8e-74 283.1 217 59.9
Cpa.g.sc127.19 Carica papaya HOM05D003659 ORTHO05D004298 3.1e-74 282.3 177 67.8
Os08g0278900 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 3.1e-74 282.3 207 60.4
Phvul.009G088100 Phaseolus vulgaris HOM05D003659 ORTHO05D004298 3.1e-74 282.3 176 68.8
Psat5g032160 Pisum sativum HOM05D003659 ORTHO05D004298 3.1e-74 282.3 177 68.4
Sed0006058 Sechium edule HOM05D003659 ORTHO05D004298 3.1e-74 282.3 183 65.6
Thecc.09G017100 Theobroma cacao HOM05D003659 ORTHO05D004298 3.1e-74 282.3 183 63.9
vmacro16858 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 3.1e-74 282.3 211 60.7
PGSC0003DMG400014120 Solanum tuberosum HOM05D003659 ORTHO05D004298 4.1e-74 282.0 211 60.7
MSTRG.11175 Avicennia marina HOM05D003659 ORTHO05D004298 5.3e-74 281.6 211 59.2
Rhsim12G0187700 Rhododendron simsii HOM05D003659 ORTHO05D004298 5.3e-74 281.6 185 67.0
SGA_v2.0_scaffold5G02776 Striga asiatica HOM05D003659 ORTHO05D004298 6.9e-74 281.2 190 66.8
Sed0005308 Sechium edule HOM05D003659 ORTHO05D004298 1.2e-73 280.4 179 67.0
MD08G1057800 Malus domestica HOM05D003659 ORTHO05D004298 2.0e-73 279.6 177 67.2
unitig_61.g26227 Utricularia gibba HOM05D003659 ORTHO05D004298 4.5e-73 278.5 206 60.7
Peaxi162Scf00332g00435 Petunia axillaris HOM05D003659 ORTHO05D004298 5.9e-73 278.1 184 65.8
Pp3c9_3320 Physcomitrium patens HOM05D003659 ORTHO05D004298 2.2e-72 276.2 201 68.2
Sc12g0008380 Simmondsia chinensis HOM05D003659 ORTHO05D004298 2.2e-72 276.2 190 66.3
Nitab4.5_0001454g0190 Nicotiana tabacum HOM05D003659 ORTHO05D004298 6.5e-72 274.6 199 63.3
SMO304G0007 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 6.5e-72 274.6 181 70.2
COL.COLO4_03628 Corchorus olitorius HOM05D003659 ORTHO05D004298 8.5e-72 274.2 177 68.4
CBR_g38858 Chara braunii HOM05D003659 ORTHO05D004298 1.1e-71 273.9 221 58.8
Oeu004335.5 Olea europaea HOM05D003659 ORTHO05D004298 2.5e-71 272.7 234 55.1
CDE02G2060 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 4.2e-71 271.9 172 69.2
Medtr3g106130 Medicago truncatula HOM05D003659 ORTHO05D004298 9.4e-71 270.8 197 60.9
SalBow7G4756 Salvia bowleyana HOM05D003659 ORTHO05D004298 1.6e-70 270.0 166 68.7
unitig_0.g1106 Utricularia gibba HOM05D003659 ORTHO05D004298 7.9e-70 267.7 245 51.4
Haze_21430 Corylus avellana HOM05D003659 ORTHO05D004298 1.4e-69 266.9 261 49.0
Ah.16g104980 Amaranthus hybridus HOM05D003659 ORTHO05D004298 2.0e-68 263.1 187 62.6
arahy.Tifrunner.gnm1.ann1.7GH63I Arachis hypogaea HOM05D003659 ORTHO05D004298 4.1e-66 255.4 177 63.3
arahy.Tifrunner.gnm1.ann1.Q7FMUW Arachis hypogaea HOM05D003659 ORTHO05D004298 7.0e-66 254.6 177 63.3
Lsat_1_v5_gn_4_87041 Lactuca sativa HOM05D003659 ORTHO05D004298 2.5e-63 246.1 179 62.6
HPP92_010392 Vanilla planifolia HOM05D003659 ORTHO05D004298 1.9e-55 219.9 166 58.4
Cre13.g571750 Chlamydomonas reinhardtii HOM05D003659 ORTHO05D004298 1.0e-53 214.2 184 56.0
MCO11G512 Micromonas commoda HOM05D003659 ORTHO05D004298 9.8e-52 207.6 187 54.5
TPR.G3109 Trifolium pratense HOM05D003659 ORTHO05D004298 4.8e-51 205.3 183 54.1
AUR62012468 Chenopodium quinoa HOM05D003659 ORTHO05D004298 4.5e-49 198.7 204 50.0
TAR636G3496 Trochodendron aralioides HOM05D003659 ORTHO05D004298 5.0e-48 195.3 215 47.9
AUR62031594 Chenopodium quinoa HOM05D003659 ORTHO05D004298 6.8e-45 184.9 176 50.6
Dinv21405 Davidia involucrata HOM05D003659 ORTHO05D004298 3.4e-44 182.6 118 66.9
THA.LOC104804845 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 1.2e-38 164.1 103 67.0
PRCOL_00006403 Prasinoderma coloniale HOM05D003659 ORTHO05D004298 6.8e-37 158.3 184 41.3
Nitab4.5_0026787g0010 Nicotiana tabacum HOM05D003659 ORTHO05D004298 9.8e-36 154.5 103 66.0
Cc07_g20440 Coffea canephora HOM05D003659 ORTHO05D004298 1.7e-32 143.7 92 66.3
arahy.Tifrunner.gnm1.ann1.K0Y0BK Arachis hypogaea HOM05D003659 ORTHO05D004298 3.0e-32 142.9 108 59.3
Cc10_g09910 Coffea canephora HOM05D003659 ORTHO05D004298 3.0e-32 142.9 119 55.5
Cc00_g05940 Coffea canephora HOM05D003659 ORTHO05D004298 8.6e-32 141.4 87 69.0
Cc05_g03490 Coffea canephora HOM05D003659 ORTHO05D004298 2.5e-31 139.8 92 65.2
Cc08_g06110 Coffea canephora HOM05D003659 ORTHO05D004298 3.3e-31 139.4 119 54.6
Cc10_g10650 Coffea canephora HOM05D003659 ORTHO05D004298 4.3e-31 139.0 84 70.2
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 1.2e-30 137.5 108 58.3
TPR.G40670 Trifolium pratense HOM05D003659 ORTHO05D004298 3.1e-29 132.9 88 64.8
Actinidia36884 Actinidia chinensis HOM05D003659 ORTHO05D004298 5.8e-28 128.6 108 54.6
Cc05_g01640 Coffea canephora HOM05D003659 ORTHO05D004298 7.5e-28 128.3 93 61.3
Cc08_g07620 Coffea canephora HOM05D003659 ORTHO05D004298 2.9e-27 126.3 74 71.6
EL10Ac2g04128 Beta vulgaris HOM05D003659 ORTHO05D004298 3.5e-25 119.4 141 44.0
Cc00_g06440 Coffea canephora HOM05D003659 ORTHO05D004298 3.9e-24 115.9 72 66.7
Cc00_g21920 Coffea canephora HOM05D003659 ORTHO05D004298 8.6e-24 114.8 74 68.9
AagrBONN_evm.TU.Sc2ySwM_117.1898 Anthoceros agrestis HOM05D003659 ORTHO05D004298 9.5e-23 111.3 80 63.8
BraA10t44716Z Brassica rapa HOM05D001880 ORTHO05D004730 1.8e-21 107.1 77 61.0
Ca_15770_v3 Cicer arietinum L. HOM05D003659 ORTHO05D004298 2.6e-20 103.2 62 69.4
HPP92_010427 Vanilla planifolia HOM05D003659 ORTHO05D004298 3.4e-20 102.8 101 50.5
Haze_27667 Corylus avellana HOM05D003659 ORTHO05D004298 1.3e-19 100.9 116 42.2
FvH4_3g15950 Fragaria vesca HOM05D003659 ORTHO05D004298 1.3e-16 90.9 82 56.1
Hma1.2p1_0302F.1_g118750 Hydrangea macrophylla HOM05D003659 ORTHO05D004298 6.8e-13 78.6 66 56.1
FAN11G3099 Fragaria x ananassa HOM05D003659 ORTHO05D004298 1.2e-12 77.8 73 54.8
Cfa024316 Carpinus fangiana HOM05D003659 ORTHO05D124421 1.7e-11 73.9 196 29.6
Cfa026278 Carpinus fangiana HOM05D003659 ORTHO05D121859 1.1e-10 71.2 208 28.4
Cfa024390 Carpinus fangiana HOM05D003659 ORTHO05D125208 3.0e-08 63.2 135 34.8
SHI37098 Sapria himalayana HOM05D003659 ORTHO05D004298 7.3e-07 58.5 43 58.1
SHI20750 Sapria himalayana HOM05D003659 ORTHO05D004298 2.1e-06 57.0 54 51.9
SHI48633 Sapria himalayana HOM05D003659 ORTHO05D004298 6.2e-06 55.5 48 56.2


User provided reference genes

Program Settings