Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 0.0e+00 1176.0 581 100.0
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 1.3e-236 823.2 549 71.8
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 2.1e-215 752.7 533 68.9
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 6.9e-198 694.5 544 64.5
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 1.1e-187 660.6 540 59.8
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 3.2e-187 659.1 536 60.4
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 3.2e-187 659.1 540 60.2
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 5.5e-187 658.3 537 58.8
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 7.2e-187 657.9 540 60.0
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 1.2e-186 657.1 537 59.2
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 1.2e-186 657.1 537 59.2
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 2.7e-186 656.0 537 59.4
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 7.9e-186 654.4 537 59.0
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 1.0e-185 654.1 550 58.5
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 2.3e-185 652.9 537 59.2
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 3.0e-185 652.5 536 59.1
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 3.0e-185 652.5 536 60.4
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 3.0e-185 652.5 537 60.1
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 1.5e-184 650.2 537 58.8
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 4.4e-184 648.7 537 60.0
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 5.7e-184 648.3 539 59.7
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 3.7e-183 645.6 537 58.5
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 4.8e-183 645.2 538 59.1
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 6.3e-183 644.8 537 57.5
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 1.1e-182 644.0 537 58.1
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 2.4e-182 642.9 536 58.6
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 3.1e-182 642.5 537 58.5
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 5.3e-182 641.7 545 56.9
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 6.9e-182 641.3 536 58.4
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 9.1e-182 641.0 536 58.8
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 2.0e-181 639.8 537 57.9
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 2.0e-181 639.8 537 57.9
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 4.5e-181 638.6 536 57.8
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 5.9e-181 638.3 545 57.6
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 1.3e-180 637.1 537 57.7
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 1.7e-180 636.7 537 57.7
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 5.0e-180 635.2 537 57.5
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 6.5e-180 634.8 599 53.1
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 8.5e-180 634.4 599 53.1
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 1.1e-179 634.0 537 57.4
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 3.2e-179 632.5 537 57.7
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 2.1e-178 629.8 574 56.6
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 3.6e-178 629.0 560 56.4
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 4.7e-178 628.6 536 57.3
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 8.0e-178 627.9 537 56.8
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 1.0e-177 627.5 537 57.4
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 3.0e-177 625.9 540 57.8
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 3.0e-177 625.9 537 57.2
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 3.9e-177 625.5 536 58.8
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 8.8e-177 624.4 536 57.8
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 2.0e-176 623.2 536 57.3
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 4.4e-176 622.1 536 58.2
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 2.8e-175 619.4 537 57.0
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 6.3e-175 618.2 536 57.1
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 8.2e-175 617.8 538 56.9
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 2.4e-174 616.3 537 56.1
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 5.3e-174 615.1 549 56.5
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 7.0e-174 614.8 536 56.3
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 9.1e-174 614.4 536 57.5
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.6e-173 613.6 537 56.6
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 2.0e-173 613.2 540 57.2
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 2.0e-173 613.2 569 53.4
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 2.0e-173 613.2 540 56.5
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 1.0e-172 610.9 536 56.0
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 1.0e-172 610.9 536 56.9
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.3e-172 610.5 538 56.1
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 1.7e-172 610.1 540 55.9
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 1.1e-171 607.4 537 57.4
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 3.2e-171 605.9 538 56.3
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 4.2e-171 605.5 538 55.9
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 5.5e-171 605.1 537 57.0
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 5.5e-171 605.1 537 56.1
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 1.6e-170 603.6 539 55.1
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 2.7e-170 602.8 538 56.1
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 1.0e-169 600.9 537 57.0
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 1.0e-169 600.9 529 56.7
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 1.4e-169 600.5 536 56.2
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 1.8e-169 600.1 551 55.4
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 2.3e-169 599.7 539 54.9
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 2.2e-167 593.2 628 50.0
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 1.3e-164 583.9 536 55.4
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 1.7e-164 583.6 536 54.9
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 1.8e-161 573.5 609 49.9
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 4.0e-161 572.4 558 51.6
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 5.9e-157 558.5 526 53.8
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 1.0e-156 557.8 536 53.7
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 2.3e-156 556.6 542 53.0
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 8.9e-153 544.7 541 52.3
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 1.8e-150 537.0 538 51.5
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 4.5e-149 532.3 537 52.0
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 2.8e-146 523.1 551 50.5
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 2.6e-144 516.5 579 47.7
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 5.4e-142 508.8 452 54.9
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 2.8e-138 496.5 536 50.7
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 5.2e-137 492.3 547 48.4
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 9.8e-136 488.0 443 54.9
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 3.2e-134 483.0 755 38.3
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 1.3e-132 477.6 624 43.6
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 8.6e-132 474.9 403 57.3
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 1.3e-127 461.1 536 46.8
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 1.3e-124 451.1 380 57.4
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 9.5e-123 444.9 543 45.1
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 3.6e-122 443.0 378 57.9
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 1.7e-116 424.1 361 57.3
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 3.5e-109 399.8 343 54.2
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 1.6e-106 391.0 374 49.5
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 2.4e-102 377.1 392 50.3
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 3.0e-100 370.2 401 48.9
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 3.7e-98 363.2 493 42.2
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 1.4e-94 351.3 265 63.4
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 2.5e-94 350.5 608 37.8
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 2.0e-75 287.7 870 28.0
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 6.3e-74 282.7 270 53.3
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 2.6e-72 277.3 559 31.7
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 7.7e-72 275.8 380 43.7
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 2.8e-66 257.3 328 44.5
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 1.3e-63 248.4 226 51.8
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 8.0e-61 239.2 273 45.8
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 1.6e-56 224.9 192 58.3
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 1.7e-55 221.5 166 65.1
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 2.9e-55 220.7 287 42.2
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.6e-53 214.9 229 52.0
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 2.7e-45 187.6 165 59.4
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 8.3e-42 176.0 156 59.6
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 1.1e-41 175.6 154 57.8
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 4.1e-41 173.7 233 44.6
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 9.1e-41 172.6 132 62.1
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 9.1e-41 172.6 159 50.3
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 5.0e-39 166.8 189 46.6
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 7.2e-38 162.9 141 59.6
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 5.2e-36 156.8 130 57.7
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 1.2e-32 145.6 184 44.6
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.9e-31 141.0 154 53.2
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 8.6e-31 139.4 154 52.6
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 9.8e-27 125.9 110 60.0
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 3.5e-24 117.5 105 57.1
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 3.3e-22 110.9 83 67.5
CBR_g34498 Chara braunii HOM05D003088 ORTHO05D006665 7.3e-22 109.8 84 65.5
SEGI_13361 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 3.6e-13 80.9 73 54.8
Rhsim12G0175500 Rhododendron simsii HOM05D005139 ORTHO05D006125 2.4e-09 68.2 105 40.0
Rhsim02G0051300 Rhododendron simsii HOM05D005139 ORTHO05D006125 5.4e-09 67.0 81 43.2
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 6.0e-08 63.5 198 24.2


User provided reference genes

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