Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0144s0007 Marchantia polymorpha HOM05D001623 ORTHO05D001473 1.6e-100 369.4 180 100.0
Pp3c4_4730 Physcomitrium patens HOM05D001623 ORTHO05D001473 4.8e-41 171.8 143 57.3
Pp3c12_11710 Physcomitrium patens HOM05D009332 ORTHO05D001473 2.0e-39 166.4 120 62.5
EL10Ac5g10536 Beta vulgaris HOM05D001623 ORTHO05D001473 8.0e-20 101.3 134 41.0
Mapoly0036s0049 Marchantia polymorpha HOM05D001623 ORTHO05D001473 6.4e-17 91.7 123 35.8
Sc16g0007260 Simmondsia chinensis HOM05D001623 ORTHO05D001473 6.4e-17 91.7 142 36.6
AUR62028594 Chenopodium quinoa HOM05D001623 ORTHO05D001473 8.3e-17 91.3 131 38.2
Mapoly0036s0052 Marchantia polymorpha HOM05D001623 ORTHO05D001473 1.4e-16 90.5 155 34.2
Sc16g0007280 Simmondsia chinensis HOM05D001623 ORTHO05D001473 9.2e-16 87.8 131 37.4
Mapoly0036s0051 Marchantia polymorpha HOM05D001623 ORTHO05D001473 1.2e-15 87.4 121 37.2
Sc16g0007220 Simmondsia chinensis HOM05D001623 ORTHO05D001473 1.6e-15 87.0 129 35.7
A04p16650 Brassica napus HOM05D001623 ORTHO05D001473 1.0e-14 84.3 130 33.8
BcaC02g08735 Brassica carinata HOM05D001623 ORTHO05D001473 1.3e-14 84.0 130 33.8
Sc16g0007240 Simmondsia chinensis HOM05D001623 ORTHO05D001473 1.3e-14 84.0 129 37.2
BcaB06g27806 Brassica carinata HOM05D001623 ORTHO05D001473 2.3e-14 83.2 130 33.1
Atru.chr4.109 Acer truncatum HOM05D001623 ORTHO05D001473 3.0e-14 82.8 132 33.3
Manes.13G092000 Manihot esculenta HOM05D001623 ORTHO05D001473 3.0e-14 82.8 135 34.1
BcaC02g08687 Brassica carinata HOM05D001623 ORTHO05D001473 3.9e-14 82.4 130 33.8
BcaB07g29780 Brassica carinata HOM05D001623 ORTHO05D001473 5.0e-14 82.0 145 31.7
Sopen03g024170 Solanum pennellii HOM05D001623 ORTHO05D001473 5.0e-14 82.0 132 34.1
Solyc03g093360.3 Solanum lycopersicum HOM05D001623 ORTHO05D001473 6.6e-14 81.6 132 34.1
PGSC0003DMG400018856 Solanum tuberosum HOM05D001623 ORTHO05D001473 6.6e-14 81.6 132 34.1
Aqoxy2G00315 Aquilegia oxysepala HOM05D001623 ORTHO05D001473 8.6e-14 81.3 139 33.1
Hma1.2p1_0049F.1_g028180 Hydrangea macrophylla HOM05D001623 ORTHO05D001473 8.6e-14 81.3 134 37.3
Sc16g0007210 Simmondsia chinensis HOM05D001623 ORTHO05D001473 8.6e-14 81.3 129 34.1
C02p63850 Brassica napus HOM05D001623 ORTHO05D001473 1.5e-13 80.5 145 31.7
PSO541G5847 Papaver somniferum HOM05D001623 ORTHO05D001473 1.5e-13 80.5 133 33.1
PSO781G0143 Papaver somniferum HOM05D001623 ORTHO05D001473 1.5e-13 80.5 133 33.1
THA.LOC104818487 Tarenaya hassleriana HOM05D001623 ORTHO05D001473 1.5e-13 80.5 133 32.3
BcaC03g18309 Brassica carinata HOM05D001623 ORTHO05D001473 1.9e-13 80.1 145 31.7
BolC2t12452H Brassica oleracea HOM05D001623 ORTHO05D001473 1.9e-13 80.1 145 31.7
Medtr3g087490 Medicago truncatula HOM05D001623 ORTHO05D001473 1.9e-13 80.1 133 34.6
SMO367G0597 Selaginella moellendorffii HOM05D001623 ORTHO05D001473 1.9e-13 80.1 129 39.5
A02p43710 Brassica napus HOM05D001623 ORTHO05D001473 2.5e-13 79.7 136 31.6
BraA02t09295Z Brassica rapa HOM05D001623 ORTHO05D001473 2.5e-13 79.7 136 31.6
Gorai.007G240400 Gossypium raimondii HOM05D001623 ORTHO05D001473 2.5e-13 79.7 132 33.3
COL.COLO4_14093 Corchorus olitorius HOM05D001623 ORTHO05D001473 3.3e-13 79.3 132 34.1
Thhalv10000335m.g Eutrema salsugineum HOM05D001623 ORTHO05D001473 3.3e-13 79.3 130 31.5
Manes.12G136400 Manihot esculenta HOM05D001623 ORTHO05D001473 3.3e-13 79.3 132 33.3
Potri.007G091000 Populus trichocarpa HOM05D001623 ORTHO05D001473 3.3e-13 79.3 132 34.1
Actinidia13590 Actinidia chinensis HOM05D001623 ORTHO05D001473 4.3e-13 79.0 139 33.8
Aqoxy2G00318 Aquilegia oxysepala HOM05D001623 ORTHO05D001473 4.3e-13 79.0 133 31.6
PSO541G0174 Papaver somniferum HOM05D001623 ORTHO05D001473 5.6e-13 78.6 139 31.7
Thecc.03G152500 Theobroma cacao HOM05D001623 ORTHO05D001473 5.6e-13 78.6 133 32.3
Duzib084G1212 Durio zibethinus HOM05D001623 ORTHO05D001473 9.5e-13 77.8 133 31.6
Mapoly0117s0046 Marchantia polymorpha HOM05D001623 ORTHO05D001473 9.5e-13 77.8 132 34.1
CDE11G0762 Ceratophyllum demersum HOM05D001623 ORTHO05D001473 1.2e-12 77.4 129 33.3
MELO3C007767.2 Cucumis melo HOM05D001623 ORTHO05D001473 1.2e-12 77.4 130 33.1
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 1.2e-12 77.4 132 32.6
PSO781G0252 Papaver somniferum HOM05D001623 ORTHO05D001473 1.2e-12 77.4 139 31.7
Psat5g089440 Pisum sativum HOM05D001623 ORTHO05D001473 1.2e-12 77.4 132 31.8
Sc16g0010970 Simmondsia chinensis HOM05D001623 ORTHO05D001473 1.6e-12 77.0 131 35.1
C04p51200 Brassica napus HOM05D001623 ORTHO05D001473 3.6e-12 75.9 130 32.3
CDE05G0546 Ceratophyllum demersum HOM05D001623 ORTHO05D001473 3.6e-12 75.9 131 30.5
Manes.12G136500 Manihot esculenta HOM05D001623 ORTHO05D001473 3.6e-12 75.9 131 33.6
Ah.03g143410 Amaranthus hybridus HOM05D001623 ORTHO05D001473 4.7e-12 75.5 131 30.5
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 4.7e-12 75.5 132 32.6
SMO147G0143 Selaginella moellendorffii HOM05D001623 ORTHO05D001473 4.7e-12 75.5 123 32.5
CAN.G485.4 Capsicum annuum HOM05D001623 ORTHO05D001473 6.2e-12 75.1 132 32.6
CARHR157960 Cardamine hirsuta HOM05D001623 ORTHO05D001473 8.0e-12 74.7 130 33.1
PSO063G5929 Papaver somniferum HOM05D001623 ORTHO05D001473 8.0e-12 74.7 137 30.7
Cpa.g.sc1516.1 Carica papaya HOM05D001623 ORTHO05D001473 1.1e-11 74.3 129 32.6
GSVIVG01029982001 Vitis vinifera HOM05D001623 ORTHO05D001473 1.1e-11 74.3 133 29.3
Aa31LG1G16820 Aethionema arabicum HOM05D001623 ORTHO05D001473 1.4e-11 73.9 133 30.8
Gohir.D11G222800 Gossypium hirsutum HOM05D001623 ORTHO05D001473 1.4e-11 73.9 132 31.8
CDE09G0066 Ceratophyllum demersum HOM05D001623 ORTHO05D001473 1.8e-11 73.6 129 31.8
COL.COLO4_09943 Corchorus olitorius HOM05D001623 ORTHO05D001473 1.8e-11 73.6 131 30.5
MCO05G464 Micromonas commoda HOM05D009332 ORTHO05D011893 1.8e-11 73.6 126 36.5
AUR62003780 Chenopodium quinoa HOM05D001623 ORTHO05D001473 2.3e-11 73.2 131 32.1
Os06g0221300 Oryza sativa ssp. japonica HOM05D001623 ORTHO05D001473 2.3e-11 73.2 130 33.1
CAN.G813.11 Capsicum annuum HOM05D001623 ORTHO05D001473 3.1e-11 72.8 132 30.3
AUR62002021 Chenopodium quinoa HOM05D001623 ORTHO05D001473 3.1e-11 72.8 131 32.1
PSO782G2592 Papaver somniferum HOM05D001623 ORTHO05D001473 3.1e-11 72.8 137 29.2
Peaxi162Scf00478g00048 Petunia axillaris HOM05D001623 ORTHO05D001473 3.1e-11 72.8 132 30.3
Migut.L00110 Erythranthe guttata HOM05D001623 ORTHO05D001473 4.0e-11 72.4 131 31.3
QL02p025687 Quercus lobata HOM05D001623 ORTHO05D001473 4.0e-11 72.4 131 30.5
SalBow5G1073 Salvia bowleyana HOM05D001623 ORTHO05D001473 4.0e-11 72.4 131 31.3
SalBow5G5269 Salvia bowleyana HOM05D001623 ORTHO05D001473 4.0e-11 72.4 131 31.3
SMO147G0399 Selaginella moellendorffii HOM05D001623 ORTHO05D001473 4.0e-11 72.4 125 35.2
SEGI_22646 Sequoiadendron giganteum HOM05D001623 ORTHO05D001473 4.0e-11 72.4 139 30.9
SEGI_39204 Sequoiadendron giganteum HOM05D001623 ORTHO05D001473 4.0e-11 72.4 139 30.9
CDE05G0072 Ceratophyllum demersum HOM05D001623 ORTHO05D001473 5.2e-11 72.0 131 29.0
Gohir.A12G197500 Gossypium hirsutum HOM05D001623 ORTHO05D001473 5.2e-11 72.0 128 31.2
EL10Ac2g02756 Beta vulgaris HOM05D001623 ORTHO05D001473 6.8e-11 71.6 121 34.7
BcaB03g12264 Brassica carinata HOM05D001623 ORTHO05D001473 6.8e-11 71.6 130 32.3
BcaB04g17429 Brassica carinata HOM05D001623 ORTHO05D001473 6.8e-11 71.6 132 34.1
Sc16g0010980 Simmondsia chinensis HOM05D001623 ORTHO05D001473 6.8e-11 71.6 126 36.5
Cre10.g436000 Chlamydomonas reinhardtii HOM05D009332 ORTHO05D011893 8.9e-11 71.2 123 35.0
ClCG01G018880 Citrullus lanatus HOM05D001623 ORTHO05D001473 8.9e-11 71.2 130 31.5
Os02g0753300 Oryza sativa ssp. japonica HOM05D001623 ORTHO05D001473 8.9e-11 71.2 132 32.6
Eucgr.K00174 Eucalyptus grandis HOM05D001623 ORTHO05D001473 1.2e-10 70.9 131 28.2
SMO353G0115 Selaginella moellendorffii HOM05D001623 ORTHO05D001473 1.2e-10 70.9 108 31.5
Migut.F00499 Erythranthe guttata HOM05D001623 ORTHO05D001473 1.5e-10 70.5 131 30.5
Gohir.D12G200000 Gossypium hirsutum HOM05D001623 ORTHO05D001473 1.5e-10 70.5 128 30.5
Medtr3g087510 Medicago truncatula HOM05D001623 ORTHO05D001473 1.5e-10 70.5 136 30.1
Solyc04g054980.3 Solanum lycopersicum HOM05D001623 ORTHO05D001473 1.5e-10 70.5 132 30.3
Cpa.g.sc283.2 Carica papaya HOM05D001623 ORTHO05D001473 2.6e-10 69.7 130 30.0
Thhalv10000731m.g Eutrema salsugineum HOM05D001623 ORTHO05D001473 2.6e-10 69.7 130 30.0
Sopen04g024830 Solanum pennellii HOM05D001623 ORTHO05D001473 2.6e-10 69.7 132 29.5
BolC3t20078H Brassica oleracea HOM05D001623 ORTHO05D001473 3.4e-10 69.3 130 33.1
Aa31LG6G15530 Aethionema arabicum HOM05D001623 ORTHO05D001473 4.4e-10 68.9 130 33.1
CARHR113320 Cardamine hirsuta HOM05D001623 ORTHO05D001473 4.4e-10 68.9 130 30.8
EL10Ac6g15088 Beta vulgaris HOM05D001623 ORTHO05D001473 5.8e-10 68.6 130 28.5
BcaB01g02286 Brassica carinata HOM05D001623 ORTHO05D001473 5.8e-10 68.6 132 30.3
Cc07_g15370 Coffea canephora HOM05D001623 ORTHO05D001473 5.8e-10 68.6 130 30.0
Sopen04g024820 Solanum pennellii HOM05D001623 ORTHO05D001473 5.8e-10 68.6 132 29.5
Thhalv10026128m.g Eutrema salsugineum HOM05D001623 ORTHO05D001473 7.5e-10 68.2 130 33.1
Hund21784 Selenicereus undatus HOM05D001623 ORTHO05D001473 7.5e-10 68.2 135 31.9
Hund21785 Selenicereus undatus HOM05D001623 ORTHO05D001473 7.5e-10 68.2 135 31.9
CARHR246990 Cardamine hirsuta HOM05D001623 ORTHO05D001473 9.8e-10 67.8 138 30.4
Potri.003G107100 Populus trichocarpa HOM05D001623 ORTHO05D001473 9.8e-10 67.8 129 29.5
SMO147G0230 Selaginella moellendorffii HOM05D001623 ORTHO05D001473 9.8e-10 67.8 91 37.4
AT2G22170 Arabidopsis thaliana HOM05D001623 ORTHO05D001473 1.3e-09 67.4 130 29.2
BcaB08g35047 Brassica carinata HOM05D001623 ORTHO05D001473 1.3e-09 67.4 138 27.5
BcaC02g08686 Brassica carinata HOM05D001623 ORTHO05D001473 1.3e-09 67.4 130 29.2
BolC4t26710H Brassica oleracea HOM05D001623 ORTHO05D001473 1.3e-09 67.4 130 29.2
Nitab4.5_0000104g0210 Nicotiana tabacum HOM05D001623 ORTHO05D001473 1.3e-09 67.4 130 29.2
Nitab4.5_0001929g0070 Nicotiana tabacum HOM05D001623 ORTHO05D001473 1.3e-09 67.4 132 28.8
unitig_0.g1886 Utricularia gibba HOM05D001623 ORTHO05D001473 1.3e-09 67.4 133 30.1
A08p23420 Brassica napus HOM05D001623 ORTHO05D001473 1.7e-09 67.0 130 32.3
C03p78150 Brassica napus HOM05D001623 ORTHO05D001473 1.7e-09 67.0 130 32.3
Carub.0007s0161 Capsella rubella HOM05D001623 ORTHO05D001473 1.7e-09 67.0 130 31.5
Sp7g36160 Schrenkiella parvula HOM05D001623 ORTHO05D001473 1.7e-09 67.0 131 30.5
SMO147G0051 Selaginella moellendorffii HOM05D001623 ORTHO05D001473 1.7e-09 67.0 91 37.4
Sc16g0007270 Simmondsia chinensis HOM05D001623 ORTHO05D001473 1.7e-09 67.0 92 38.0
AT4G39730 Arabidopsis thaliana HOM05D001623 ORTHO05D001473 2.2e-09 66.6 130 31.5
BcaC07g41011 Brassica carinata HOM05D001623 ORTHO05D001473 2.2e-09 66.6 132 30.3
BcaC07g41091 Brassica carinata HOM05D001623 ORTHO05D001473 2.2e-09 66.6 138 27.5
A09p57720 Brassica napus HOM05D001623 ORTHO05D001473 2.2e-09 66.6 138 27.5
C04p51210 Brassica napus HOM05D001623 ORTHO05D001473 2.2e-09 66.6 130 28.5
C08p40150 Brassica napus HOM05D001623 ORTHO05D001473 2.2e-09 66.6 132 30.3
C08p40930 Brassica napus HOM05D001623 ORTHO05D001473 2.2e-09 66.6 138 27.5
BolC8t51585H Brassica oleracea HOM05D001623 ORTHO05D001473 2.2e-09 66.6 132 30.3
BraA09t41165Z Brassica rapa HOM05D001623 ORTHO05D001473 2.2e-09 66.6 138 27.5
Peaxi162Scf00295g00091 Petunia axillaris HOM05D001623 ORTHO05D001473 2.2e-09 66.6 130 29.2
Sabra03G0073900 Salix brachista HOM05D001623 ORTHO05D001473 2.2e-09 66.6 129 28.7
SGA_v2.0_scaffold54G19491 Striga asiatica HOM05D001623 ORTHO05D001473 2.2e-09 66.6 130 30.8
ATR0057G017 Amborella trichopoda HOM05D001623 ORTHO05D001473 2.9e-09 66.2 132 30.3
BcaC01g00313 Brassica carinata HOM05D001623 ORTHO05D001473 2.9e-09 66.2 130 30.8
BraA04t17301Z Brassica rapa HOM05D001623 ORTHO05D001473 2.9e-09 66.2 130 28.5
Sp4g01230 Schrenkiella parvula HOM05D001623 ORTHO05D001473 2.9e-09 66.2 138 29.0
SMO367G1173 Selaginella moellendorffii HOM05D001623 ORTHO05D001473 2.9e-09 66.2 105 30.5
Aa31LG7G14560 Aethionema arabicum HOM05D001623 ORTHO05D001473 3.7e-09 65.9 130 32.3
AL7G11930 Arabidopsis lyrata HOM05D001623 ORTHO05D001473 3.7e-09 65.9 130 31.5
THA.LOC104807705 Tarenaya hassleriana HOM05D001623 ORTHO05D001473 3.7e-09 65.9 130 31.5
Carub.0004s0133 Capsella rubella HOM05D001623 ORTHO05D001473 4.9e-09 65.5 130 28.5
CAN.G337.131 Capsicum annuum HOM05D001623 ORTHO05D001473 4.9e-09 65.5 132 26.5
Nitab4.5_0006836g0010 Nicotiana tabacum HOM05D001623 ORTHO05D001473 4.9e-09 65.5 132 28.0
Zm00001eb194190 Zea mays HOM05D001623 ORTHO05D001473 4.9e-09 65.5 134 31.3
BraA09t41105Z Brassica rapa HOM05D001623 ORTHO05D001473 6.4e-09 65.1 136 29.4
CARHR254590 Cardamine hirsuta HOM05D001623 ORTHO05D001473 6.4e-09 65.1 130 30.8
PGR142G0133 Punica granatum HOM05D001623 ORTHO05D001473 6.4e-09 65.1 129 28.7
CSS0028578 Camellia sinensis var. sinensis HOM05D001623 ORTHO05D001473 8.3e-09 64.7 130 27.7
PGSC0003DMG400020623 Solanum tuberosum HOM05D001623 ORTHO05D001473 8.3e-09 64.7 132 28.8
Nitab4.5_0000104g0230 Nicotiana tabacum HOM05D001623 ORTHO05D001473 1.4e-08 63.9 132 27.3
A04p16670 Brassica napus HOM05D001623 ORTHO05D001473 1.9e-08 63.5 144 27.8
CARHR000100 Cardamine hirsuta HOM05D001623 ORTHO05D001473 1.9e-08 63.5 133 30.8
HanXRQChr10g0289401 Helianthus annuus HOM05D001623 ORTHO05D001473 2.4e-08 63.2 130 29.2
SGA_v2.0_scaffold111G31524 Striga asiatica HOM05D001623 ORTHO05D001473 2.4e-08 63.2 130 28.5
ECA247G1213 Erigeron canadensis HOM05D001623 ORTHO05D001473 3.2e-08 62.8 130 28.5
Mapoly0117s0048 Marchantia polymorpha HOM05D001623 ORTHO05D001473 3.2e-08 62.8 133 30.1
PRCOL_00002702 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 3.2e-08 62.8 84 36.9
Hund24734 Selenicereus undatus HOM05D001623 ORTHO05D001473 5.4e-08 62.0 134 31.3
AUR62031733 Chenopodium quinoa HOM05D001623 ORTHO05D001473 7.0e-08 61.6 70 42.9
Nitab4.5_0002712g0010 Nicotiana tabacum HOM05D001623 ORTHO05D001473 7.0e-08 61.6 130 27.7
Solyc03g096540.3 Solanum lycopersicum HOM05D001623 ORTHO05D001473 9.2e-08 61.2 130 28.5
Thhalv10000329m.g Eutrema salsugineum HOM05D001623 ORTHO05D001473 1.2e-07 60.8 133 30.1
Peaxi162Scf00271g00085 Petunia axillaris HOM05D001623 ORTHO05D001473 2.7e-07 59.7 128 28.1
SalBow3G0264 Salvia bowleyana HOM05D001623 ORTHO05D001473 2.7e-07 59.7 130 27.7
SMO353G0188 Selaginella moellendorffii HOM05D049588 ORTHO05D050859 2.7e-07 59.7 88 36.4
Nitab4.5_0004173g0010 Nicotiana tabacum HOM05D001623 ORTHO05D001473 3.5e-07 59.3 130 26.9
Ah.10g029950 Amaranthus hybridus HOM05D001623 ORTHO05D001473 4.6e-07 58.9 70 44.3
AUR62006305 Chenopodium quinoa HOM05D001623 ORTHO05D001473 4.6e-07 58.9 134 28.4
AUR62032616 Chenopodium quinoa HOM05D001623 ORTHO05D001473 4.6e-07 58.9 70 40.0
AUR62032618 Chenopodium quinoa HOM05D001623 ORTHO05D001473 4.6e-07 58.9 70 40.0
Oeu031399.1 Olea europaea HOM05D001623 ORTHO05D001473 1.0e-06 57.8 86 33.7
AUR62026349 Chenopodium quinoa HOM05D001623 ORTHO05D001473 1.3e-06 57.4 133 27.1
SEGI_17058 Sequoiadendron giganteum HOM05D001120 ORTHO05D002447 8.6e-06 54.7 100 32.0


User provided reference genes

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