Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 2.8e-73 278.5 136 100.0
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 1.5e-42 176.4 123 69.9
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 1.3e-41 173.3 115 70.4
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 3.0e-35 152.1 115 64.3
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 3.7e-33 145.2 115 56.5
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 6.2e-33 144.4 114 55.3
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 6.2e-33 144.4 111 57.7
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 8.2e-33 144.1 115 59.1
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.1e-32 143.7 116 57.8
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 1.8e-32 142.9 115 57.4
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 3.1e-32 142.1 116 57.8
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 3.1e-32 142.1 115 59.1
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 3.1e-32 142.1 112 57.1
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 4.0e-32 141.7 114 56.1
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 6.9e-32 141.0 115 53.9
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 6.9e-32 141.0 115 54.8
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 1.2e-31 140.2 115 57.4
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 1.5e-31 139.8 115 57.4
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 1.5e-31 139.8 115 57.4
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 1.5e-31 139.8 115 57.4
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 1.5e-31 139.8 115 53.9
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 1.5e-31 139.8 115 54.8
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 2.0e-31 139.4 115 55.7
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 2.0e-31 139.4 115 54.8
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 2.0e-31 139.4 116 56.0
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 2.0e-31 139.4 116 56.0
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 2.6e-31 139.0 112 56.2
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 2.6e-31 139.0 114 54.4
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 2.6e-31 139.0 115 56.5
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 3.4e-31 138.7 112 56.2
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 3.4e-31 138.7 115 54.8
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 3.4e-31 138.7 115 54.8
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 3.4e-31 138.7 115 54.8
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 3.4e-31 138.7 115 54.8
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 4.5e-31 138.3 115 55.7
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 4.5e-31 138.3 115 53.9
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 4.5e-31 138.3 114 55.3
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 4.5e-31 138.3 114 54.4
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 4.5e-31 138.3 114 54.4
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 5.8e-31 137.9 115 54.8
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 5.8e-31 137.9 115 54.8
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 5.8e-31 137.9 115 54.8
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 5.8e-31 137.9 115 53.9
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 5.8e-31 137.9 115 56.5
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 5.8e-31 137.9 115 53.9
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 5.8e-31 137.9 115 53.9
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 5.8e-31 137.9 115 56.5
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 7.6e-31 137.5 115 53.9
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 7.6e-31 137.5 115 53.9
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 7.6e-31 137.5 115 54.8
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 7.6e-31 137.5 115 54.8
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 7.6e-31 137.5 115 54.8
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 7.6e-31 137.5 115 54.8
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 7.6e-31 137.5 115 54.8
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 7.6e-31 137.5 115 54.8
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 1.0e-30 137.1 115 54.8
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.0e-30 137.1 114 55.3
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 1.0e-30 137.1 115 53.9
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 1.0e-30 137.1 115 53.0
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 1.3e-30 136.7 114 54.4
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 1.3e-30 136.7 114 54.4
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.3e-30 136.7 115 53.0
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 2.2e-30 136.0 115 53.0
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 2.2e-30 136.0 115 53.9
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 2.2e-30 136.0 114 55.3
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 2.2e-30 136.0 115 55.7
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 2.9e-30 135.6 115 53.0
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 2.9e-30 135.6 115 53.0
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 2.9e-30 135.6 115 53.0
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 2.9e-30 135.6 117 54.7
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 2.9e-30 135.6 115 55.7
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 3.8e-30 135.2 115 53.0
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 3.8e-30 135.2 115 53.9
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 3.8e-30 135.2 115 53.9
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 3.8e-30 135.2 115 53.9
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 3.8e-30 135.2 112 53.6
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 3.8e-30 135.2 114 55.3
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 3.8e-30 135.2 115 53.9
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 4.9e-30 134.8 116 56.0
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 4.9e-30 134.8 115 53.0
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 4.9e-30 134.8 122 52.5
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 4.9e-30 134.8 114 55.3
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 6.5e-30 134.4 116 55.2
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 6.5e-30 134.4 115 54.8
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 6.5e-30 134.4 115 54.8
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 6.5e-30 134.4 116 55.2
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 6.5e-30 134.4 115 54.8
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 6.5e-30 134.4 116 53.4
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 6.5e-30 134.4 116 53.4
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 6.5e-30 134.4 116 53.4
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 8.4e-30 134.0 114 54.4
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 8.4e-30 134.0 115 53.9
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 1.1e-29 133.7 115 55.7
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 1.1e-29 133.7 116 53.4
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 1.1e-29 133.7 125 48.8
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 1.4e-29 133.3 115 52.2
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 1.9e-29 132.9 114 51.8
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 1.9e-29 132.9 122 51.6
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 2.5e-29 132.5 115 52.2
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 3.2e-29 132.1 115 53.9
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 3.2e-29 132.1 115 53.9
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 7.1e-29 131.0 115 53.0
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 7.1e-29 131.0 114 51.8
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 9.3e-29 130.6 115 54.8
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 1.6e-28 129.8 115 53.9
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.6e-28 129.8 116 52.6
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 2.1e-28 129.4 116 50.0
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 2.1e-28 129.4 115 52.2
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.1e-28 129.4 115 53.0
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 2.1e-28 129.4 115 55.7
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 3.5e-28 128.6 115 49.6
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 4.6e-28 128.3 115 49.6
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 4.6e-28 128.3 115 49.6
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 6.0e-28 127.9 114 50.0
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 6.0e-28 127.9 114 51.8
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 1.0e-27 127.1 115 52.2
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 1.1e-26 123.6 115 51.3
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 1.5e-26 123.2 115 50.4
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 5.7e-26 121.3 164 38.4
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 2.2e-25 119.4 129 45.7
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 2.8e-25 119.0 96 56.2
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 1.4e-24 116.7 131 44.3
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 4.1e-24 115.2 115 49.6
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 1.5e-23 113.2 133 45.1
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 2.0e-23 112.8 116 48.3
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.7e-22 109.8 98 51.0
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 8.5e-22 107.5 101 49.5
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 1.9e-21 106.3 99 52.5
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 7.2e-21 104.4 105 48.6
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.2e-20 103.6 97 49.5
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 2.1e-20 102.8 100 46.0
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 2.7e-20 102.4 122 41.8
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 6.1e-20 101.3 98 49.0
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 6.1e-20 101.3 98 46.9
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 6.1e-20 101.3 98 46.9
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 6.1e-20 101.3 96 50.0
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 1.4e-19 100.1 158 36.7
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 6.9e-16 87.8 56 67.9
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 2.6e-15 85.9 58 63.8
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 3.4e-15 85.5 57 61.4
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 4.5e-15 85.1 56 66.1
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 5.9e-15 84.7 57 63.2
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 1.0e-14 84.0 59 61.0
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.3e-14 83.6 57 61.4
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 1.3e-14 83.6 60 60.0
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 1.3e-14 83.6 57 63.2
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 3.8e-14 82.0 53 64.2
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 6.5e-14 81.3 68 55.9
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 1.1e-13 80.5 116 39.7
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 1.6e-12 76.6 90 43.3
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 1.4e-11 73.6 74 45.9
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 1.4e-11 73.6 105 41.0
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 6.7e-11 71.2 85 45.9
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 3.7e-09 65.5 52 55.8
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 6.3e-09 64.7 117 33.3
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 5.3e-08 61.6 51 51.0
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 9.1e-08 60.8 52 50.0
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 1.0e-06 57.4 69 42.0
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 5.0e-06 55.1 38 60.5


User provided reference genes

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