Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 2.0e-113 412.5 216 100.0
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 2.8e-75 285.8 216 71.3
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.4e-74 283.5 218 71.1
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 5.2e-74 281.6 217 72.4
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 6.8e-74 281.2 225 68.9
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.5e-73 280.0 229 68.1
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 2.2e-72 276.2 216 68.5
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 1.1e-68 263.8 216 68.1
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 3.3e-68 262.3 184 73.4
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 5.6e-68 261.5 193 71.0
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 5.6e-68 261.5 156 82.7
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 7.3e-68 261.2 199 69.3
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 9.5e-68 260.8 199 68.3
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 9.5e-68 260.8 192 71.9
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 1.6e-67 260.0 168 78.0
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 2.8e-67 259.2 179 74.9
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 3.6e-67 258.8 216 67.1
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 4.7e-67 258.5 192 71.4
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 4.7e-67 258.5 162 82.7
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 4.7e-67 258.5 213 65.3
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 6.2e-67 258.1 164 78.7
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 8.0e-67 257.7 189 74.6
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 8.0e-67 257.7 189 72.0
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 8.0e-67 257.7 213 65.3
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 1.0e-66 257.3 187 70.6
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 1.0e-66 257.3 179 76.5
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 1.0e-66 257.3 157 80.3
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.0e-66 257.3 192 70.3
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 1.4e-66 256.9 184 72.3
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.4e-66 256.9 171 77.2
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 1.4e-66 256.9 146 84.9
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.8e-66 256.5 179 73.2
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.8e-66 256.5 148 83.8
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.8e-66 256.5 148 83.8
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 1.8e-66 256.5 148 85.1
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.8e-66 256.5 200 70.5
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 1.8e-66 256.5 180 72.2
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 2.3e-66 256.1 148 83.1
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 2.3e-66 256.1 159 81.8
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 3.1e-66 255.8 163 77.3
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 3.1e-66 255.8 223 65.9
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 3.1e-66 255.8 164 78.7
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 3.1e-66 255.8 169 76.9
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 4.0e-66 255.4 166 78.9
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 4.0e-66 255.4 148 83.1
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 5.2e-66 255.0 164 79.9
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 5.2e-66 255.0 171 76.6
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 5.2e-66 255.0 180 74.4
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 5.2e-66 255.0 191 70.7
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 6.8e-66 254.6 183 73.2
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 6.8e-66 254.6 169 76.3
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 6.8e-66 254.6 172 75.6
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 8.9e-66 254.2 191 70.7
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 1.2e-65 253.8 164 80.5
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 1.2e-65 253.8 184 70.1
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.2e-65 253.8 157 79.6
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 1.2e-65 253.8 171 75.4
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.5e-65 253.4 171 76.0
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.5e-65 253.4 166 77.7
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 2.0e-65 253.1 140 87.9
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 2.6e-65 252.7 175 75.4
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 2.6e-65 252.7 157 78.3
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 2.6e-65 252.7 174 74.1
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 3.4e-65 252.3 156 78.8
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 3.4e-65 252.3 200 66.0
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 3.4e-65 252.3 159 79.9
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 4.4e-65 251.9 166 75.9
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 4.4e-65 251.9 205 66.8
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 5.8e-65 251.5 180 71.1
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 5.8e-65 251.5 168 76.2
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 5.8e-65 251.5 168 76.2
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 7.5e-65 251.1 193 68.4
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 9.8e-65 250.8 178 71.9
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 9.8e-65 250.8 169 74.6
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 1.3e-64 250.4 166 75.9
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 1.3e-64 250.4 193 69.4
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 1.7e-64 250.0 197 68.0
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.7e-64 250.0 185 71.9
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 2.2e-64 249.6 211 67.3
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 2.2e-64 249.6 140 86.4
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 2.2e-64 249.6 216 62.5
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 2.2e-64 249.6 161 76.4
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 2.2e-64 249.6 188 70.7
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 2.9e-64 249.2 175 73.1
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 2.9e-64 249.2 171 74.3
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.9e-64 249.2 171 74.3
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 2.9e-64 249.2 176 75.0
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 3.7e-64 248.8 144 84.0
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 3.7e-64 248.8 182 72.5
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 4.9e-64 248.4 216 63.0
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 4.9e-64 248.4 156 78.2
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 4.9e-64 248.4 215 65.6
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 4.9e-64 248.4 172 75.6
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 4.9e-64 248.4 182 72.5
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 6.4e-64 248.1 170 74.1
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 6.4e-64 248.1 212 64.2
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 6.4e-64 248.1 178 70.8
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 8.3e-64 247.7 159 78.6
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 8.3e-64 247.7 212 65.1
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 1.1e-63 247.3 209 64.1
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 1.1e-63 247.3 213 64.8
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.1e-63 247.3 185 70.8
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.1e-63 247.3 185 70.8
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 1.4e-63 246.9 208 63.9
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 1.4e-63 246.9 209 64.6
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 1.4e-63 246.9 189 69.3
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 1.9e-63 246.5 176 71.6
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 2.4e-63 246.1 192 66.7
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 3.2e-63 245.7 209 63.6
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 3.2e-63 245.7 209 64.6
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 4.1e-63 245.4 193 66.3
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 4.1e-63 245.4 209 63.2
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 4.1e-63 245.4 208 63.5
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 4.1e-63 245.4 202 65.3
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 5.4e-63 245.0 205 67.3
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 5.4e-63 245.0 150 81.3
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 5.4e-63 245.0 150 81.3
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 5.4e-63 245.0 150 81.3
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 7.0e-63 244.6 210 64.3
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 9.2e-63 244.2 210 64.8
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 9.2e-63 244.2 178 69.1
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 9.2e-63 244.2 185 70.3
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 9.2e-63 244.2 150 80.7
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 9.2e-63 244.2 189 67.2
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 1.2e-62 243.8 178 70.8
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 1.2e-62 243.8 171 72.5
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 1.2e-62 243.8 216 63.4
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.6e-62 243.4 208 63.5
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.6e-62 243.4 206 64.1
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 3.5e-62 242.3 182 69.2
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 4.6e-62 241.9 175 72.6
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 4.6e-62 241.9 205 63.9
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 7.8e-62 241.1 218 63.8
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.3e-61 240.4 216 61.6
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.1e-59 233.0 137 82.5
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 4.0e-58 228.8 173 72.3
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 5.8e-57 224.9 182 68.7
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 5.8e-57 224.9 182 68.7
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 5.8e-57 224.9 165 70.3
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 6.4e-56 221.5 163 71.2
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 8.3e-56 221.1 132 81.8
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 1.2e-54 217.2 199 59.8
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 3.0e-53 212.6 134 76.1
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 1.1e-52 210.7 156 69.9
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 2.5e-52 209.5 148 73.0
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 2.8e-43 179.5 200 55.0
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 6.2e-35 151.8 180 52.2
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 3.1e-34 149.4 153 58.2
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 6.4e-32 141.7 92 72.8
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 1.5e-28 130.6 72 87.5
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.5e-28 130.6 171 48.5
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 3.9e-13 79.3 58 65.5
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 1.5e-12 77.4 58 67.2
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 7.4e-12 75.1 58 65.5
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 5.9e-09 65.5 78 51.3


User provided reference genes

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