Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 2.6e-278 961.4 493 100.0
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 1.8e-130 470.3 404 60.1
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 3.2e-127 459.5 290 75.5
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 2.6e-121 439.9 368 62.0
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 5.8e-121 438.7 369 62.1
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 9.9e-121 438.0 365 62.2
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.3e-120 437.6 368 62.2
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 8.4e-120 434.9 366 60.7
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 1.4e-119 434.1 367 61.9
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.9e-119 433.7 367 61.6
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 3.2e-119 433.0 366 61.5
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 4.2e-119 432.6 366 62.0
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 5.4e-119 432.2 390 57.9
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 1.6e-118 430.6 399 57.1
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 3.5e-118 429.5 367 61.3
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 3.5e-118 429.5 404 55.9
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 6.0e-118 428.7 373 59.0
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 7.8e-118 428.3 365 60.5
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 1.0e-117 427.9 400 58.2
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 5.1e-117 425.6 388 58.5
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 5.1e-117 425.6 371 59.3
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 8.7e-117 424.9 376 58.0
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.5e-116 424.1 387 57.9
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.5e-116 424.1 370 59.5
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 3.3e-116 422.9 368 58.4
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 7.3e-116 421.8 365 59.5
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 1.6e-115 420.6 367 58.3
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 2.8e-115 419.9 393 58.0
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 3.6e-115 419.5 363 59.5
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 4.8e-115 419.1 368 58.7
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 4.8e-115 419.1 287 70.0
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 6.2e-115 418.7 366 59.3
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 8.1e-115 418.3 370 59.2
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 2.4e-114 416.8 373 59.0
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 1.2e-113 414.5 396 55.6
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 2.0e-113 413.7 376 58.5
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 4.5e-113 412.5 372 58.3
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 5.8e-113 412.1 287 70.0
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 5.8e-113 412.1 359 61.8
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 7.6e-113 411.8 364 58.2
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 9.9e-113 411.4 372 58.3
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 9.9e-113 411.4 368 59.5
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 1.3e-112 411.0 387 56.1
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 1.3e-112 411.0 369 58.8
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 1.7e-112 410.6 287 67.9
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 2.9e-112 409.8 366 59.3
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 3.8e-112 409.5 386 57.0
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 3.8e-112 409.5 367 58.3
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 3.8e-112 409.5 291 67.7
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 4.9e-112 409.1 358 62.6
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 4.9e-112 409.1 367 58.3
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 6.4e-112 408.7 379 58.3
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 8.4e-112 408.3 355 58.0
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 1.1e-111 407.9 370 58.1
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 1.4e-111 407.5 368 57.1
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 4.2e-111 406.0 396 54.0
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 4.2e-111 406.0 378 57.7
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 4.2e-111 406.0 395 54.9
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 5.4e-111 405.6 364 58.2
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 9.3e-111 404.8 395 57.7
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 9.3e-111 404.8 363 57.6
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 1.6e-110 404.1 392 55.1
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 3.5e-110 402.9 372 55.9
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 3.5e-110 402.9 366 58.2
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 3.5e-110 402.9 388 56.4
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 4.6e-110 402.5 378 57.1
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 7.9e-110 401.7 369 58.0
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 1.3e-109 401.0 375 57.1
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 2.3e-109 400.2 388 55.7
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 2.3e-109 400.2 388 55.2
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 5.1e-109 399.1 365 57.3
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 1.9e-108 397.1 367 58.0
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 2.5e-108 396.7 363 56.5
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 5.6e-108 395.6 292 65.1
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 5.6e-108 395.6 365 55.9
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 7.4e-108 395.2 363 57.0
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 7.4e-108 395.2 365 56.2
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 2.1e-107 393.7 363 56.7
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 2.8e-107 393.3 368 56.8
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 4.8e-107 392.5 390 53.8
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.8e-106 390.6 393 54.2
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 4.0e-106 389.4 367 55.9
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 9.0e-106 388.3 370 54.3
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 9.0e-106 388.3 364 56.9
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 9.0e-106 388.3 363 54.0
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 1.5e-105 387.5 398 53.3
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 2.0e-105 387.1 363 55.9
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 9.9e-105 384.8 366 55.5
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 9.9e-105 384.8 366 55.5
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 1.3e-104 384.4 371 55.5
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 6.4e-104 382.1 403 53.3
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 1.1e-103 381.3 399 53.1
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 1.9e-103 380.6 381 54.1
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 7.1e-103 378.6 368 57.1
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 2.1e-102 377.1 365 54.0
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 3.5e-102 376.3 363 53.2
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 4.6e-102 375.9 365 53.2
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 7.9e-102 375.2 286 64.7
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 3.0e-101 373.2 365 53.4
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 6.7e-101 372.1 367 55.6
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.1e-100 371.3 366 55.7
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.5e-100 370.9 373 54.2
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 5.6e-100 369.0 365 53.7
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.6e-99 367.5 369 56.1
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 2.8e-99 366.7 333 56.8
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 3.7e-99 366.3 367 55.0
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 4.8e-99 365.9 363 52.6
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 8.2e-99 365.2 383 53.5
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 1.4e-98 364.4 383 53.0
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.4e-98 364.4 377 52.5
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 1.8e-98 364.0 383 52.7
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.8e-98 364.0 363 55.6
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 4.0e-98 362.8 366 54.4
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 4.0e-98 362.8 374 53.2
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 5.3e-98 362.5 350 55.7
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 5.3e-98 362.5 364 53.0
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 5.3e-98 362.5 364 53.0
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 6.9e-98 362.1 365 52.3
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 6.9e-98 362.1 371 52.8
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.2e-97 361.3 363 52.9
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 2.6e-97 360.1 363 52.9
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 7.6e-97 358.6 368 54.6
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 7.6e-97 358.6 366 53.3
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 1.0e-96 358.2 364 52.7
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 1.1e-95 354.8 383 51.7
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 1.1e-95 354.8 383 51.7
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 3.2e-95 353.2 389 51.4
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 3.2e-95 353.2 387 51.2
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 3.2e-95 353.2 387 51.2
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 2.1e-94 350.5 383 51.2
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.7e-94 350.1 334 55.7
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 3.5e-94 349.7 382 52.4
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.5e-92 344.4 507 41.2
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 6.3e-91 339.0 333 53.2
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 1.1e-87 328.2 287 58.5
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 9.7e-84 315.1 303 55.1
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.1e-82 311.6 247 63.2
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 5.3e-82 309.3 372 48.4
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 6.8e-61 239.2 160 70.0
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 3.8e-56 223.4 368 38.6
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 8.8e-53 212.2 171 62.0
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 2.0e-52 211.1 293 41.0
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 7.0e-50 202.6 160 61.9
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 1.2e-38 165.2 244 41.0
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 2.3e-32 144.4 274 36.5
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 4.7e-30 136.7 189 42.3
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 9.9e-20 102.4 72 63.9
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 5.4e-18 96.7 173 35.8
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 5.6e-15 86.7 279 28.3
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.4e-13 82.0 120 42.5
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 3.4e-12 77.4 119 43.7
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 9.9e-12 75.9 56 69.6
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 2.3e-08 64.7 112 38.4


User provided reference genes

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