Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 3.0e-207 724.9 369 100.0
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 5.0e-93 345.5 317 57.7
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 6.1e-83 312.0 304 55.6
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 4.4e-81 305.8 249 61.0
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 2.8e-75 286.6 258 57.8
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 4.7e-75 285.8 258 57.4
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 1.0e-74 284.6 264 58.0
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 1.8e-74 283.9 253 59.3
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 1.8e-74 283.9 250 58.8
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 3.1e-74 283.1 280 55.7
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 3.1e-74 283.1 280 55.7
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 3.1e-74 283.1 269 58.4
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 3.1e-74 283.1 258 56.6
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 4.0e-74 282.7 272 55.5
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.2e-73 281.2 253 59.3
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 1.2e-73 281.2 281 55.2
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 1.5e-73 280.8 272 54.8
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 2.0e-73 280.4 254 54.3
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 2.6e-73 280.0 285 53.0
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 4.4e-73 279.3 261 57.9
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 9.8e-73 278.1 256 55.9
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 9.8e-73 278.1 248 58.5
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 1.3e-72 277.7 253 55.7
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 1.3e-72 277.7 265 54.7
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.7e-72 277.3 257 56.8
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 1.7e-72 277.3 252 56.7
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 1.7e-72 277.3 253 57.7
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 3.7e-72 276.2 250 56.4
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 4.9e-72 275.8 253 55.7
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 4.9e-72 275.8 277 54.5
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 4.9e-72 275.8 251 57.8
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 6.4e-72 275.4 250 57.6
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 6.4e-72 275.4 263 56.7
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 8.3e-72 275.0 250 58.4
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.1e-71 274.6 258 57.4
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 1.1e-71 274.6 254 57.5
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 1.4e-71 274.2 264 55.3
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 1.9e-71 273.9 267 55.4
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 2.4e-71 273.5 253 55.3
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 2.4e-71 273.5 275 53.1
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 3.2e-71 273.1 259 54.4
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 3.2e-71 273.1 253 56.1
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 4.1e-71 272.7 275 54.9
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 5.4e-71 272.3 275 54.9
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 7.0e-71 271.9 254 54.3
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 9.2e-71 271.6 275 53.8
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.2e-70 271.2 259 54.8
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.2e-70 271.2 264 53.4
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 1.2e-70 271.2 258 55.4
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 1.6e-70 270.8 257 55.6
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 2.7e-70 270.0 250 56.0
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 3.5e-70 269.6 294 52.0
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 3.5e-70 269.6 258 55.8
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 4.6e-70 269.2 250 56.8
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 4.6e-70 269.2 252 54.0
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 1.3e-69 267.7 261 54.4
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.7e-69 267.3 250 56.8
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 2.3e-69 266.9 275 51.3
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 3.0e-69 266.5 299 51.5
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 5.0e-69 265.8 295 48.5
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 6.6e-69 265.4 253 56.1
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 8.6e-69 265.0 261 54.4
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 8.6e-69 265.0 254 53.5
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 8.6e-69 265.0 252 55.2
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.1e-68 264.6 253 54.2
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 1.1e-68 264.6 234 58.5
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 1.1e-68 264.6 250 56.0
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.5e-68 264.2 289 50.5
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 1.5e-68 264.2 254 55.5
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 1.9e-68 263.8 268 52.6
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 2.5e-68 263.5 270 53.0
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 2.5e-68 263.5 275 51.6
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 3.3e-68 263.1 253 54.5
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 3.3e-68 263.1 254 55.9
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 3.3e-68 263.1 268 53.7
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 4.3e-68 262.7 253 54.2
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 5.6e-68 262.3 255 52.9
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 1.2e-67 261.2 253 54.5
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 1.6e-67 260.8 270 52.6
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 2.1e-67 260.4 270 52.2
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 2.1e-67 260.4 270 52.2
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 2.1e-67 260.4 270 52.2
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 2.8e-67 260.0 253 53.8
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 6.2e-67 258.8 287 51.6
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 8.0e-67 258.5 279 49.5
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 8.0e-67 258.5 328 44.8
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 1.4e-66 257.7 307 49.2
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.4e-66 257.7 288 50.3
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 1.8e-66 257.3 312 48.1
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 3.1e-66 256.5 250 55.6
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 8.9e-66 255.0 253 53.8
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 1.5e-65 254.2 326 43.6
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 1.5e-65 254.2 253 53.8
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 7.5e-65 251.9 261 52.1
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 3.2e-63 246.5 225 56.4
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 2.1e-62 243.8 280 48.6
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 7.8e-62 241.9 264 47.0
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 8.6e-61 238.4 253 49.0
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 3.3e-60 236.5 264 46.6
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 3.3e-60 236.5 278 45.0
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 4.3e-60 236.1 252 46.4
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 4.3e-60 236.1 252 46.4
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 1.6e-59 234.2 264 46.2
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 2.8e-59 233.4 253 49.0
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 3.6e-59 233.0 253 47.8
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 8.1e-59 231.9 253 48.6
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 1.4e-58 231.1 216 56.0
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.8e-58 230.7 219 56.6
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.1e-58 229.9 220 56.8
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 6.8e-58 228.8 253 48.6
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 8.9e-58 228.4 251 51.4
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 1.2e-57 228.0 264 45.1
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.0e-57 227.3 256 47.7
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 4.4e-57 226.1 251 48.2
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 3.7e-56 223.0 262 43.9
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 4.9e-56 222.6 252 44.4
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.9e-56 222.6 252 44.4
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 8.3e-56 221.9 252 44.4
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 7.1e-55 218.8 192 58.3
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 2.1e-54 217.2 248 46.8
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 2.7e-54 216.9 280 45.7
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 3.5e-54 216.5 253 45.8
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 8.6e-53 211.8 214 52.3
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 1.5e-52 211.1 214 51.4
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 3.3e-52 209.9 162 64.2
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 4.3e-52 209.5 253 46.2
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 7.3e-52 208.8 230 47.4
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 2.1e-51 207.2 170 62.4
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.8e-50 204.1 223 47.5
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.5e-49 201.1 253 43.9
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 3.4e-49 199.9 232 44.4
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 9.9e-49 198.4 249 44.6
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 3.2e-47 193.4 264 43.6
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 3.2e-47 193.4 264 43.6
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.3e-45 188.0 236 45.8
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 5.6e-44 182.6 188 50.5
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 4.0e-42 176.4 163 54.6
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 5.4e-39 166.0 283 40.6
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 1.2e-38 164.9 236 41.5
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 3.5e-38 163.3 222 43.7
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 2.3e-37 160.6 158 53.2
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 7.3e-36 155.6 255 37.6
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.1e-34 151.8 184 42.9
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 4.9e-32 142.9 261 36.0
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 8.4e-32 142.1 393 30.0
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 3.2e-31 140.2 160 48.1
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.5e-28 131.3 166 39.8
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 2.0e-25 120.9 205 41.0
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 3.4e-25 120.2 175 40.6
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 2.7e-22 110.5 96 54.2
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 2.5e-20 104.0 110 51.8
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.1e-18 98.6 186 32.8
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 1.4e-15 88.2 113 44.2
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 3.2e-15 87.0 177 35.0
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 5.5e-15 86.3 67 67.2
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.6e-14 84.7 122 38.5
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 2.1e-14 84.3 181 33.7
AagrBONN_evm.TU.Sc2ySwM_344.3329 Anthoceros agrestis HOM05D003990 ORTHO05D071624 1.3e-13 81.6 260 30.0
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 4.1e-10 70.1 67 55.2
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.5e-09 68.2 109 33.9
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 2.2e-08 64.3 59 57.6
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 2.9e-08 63.9 43 74.4
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 5.5e-07 59.7 66 45.5
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 7.2e-07 59.3 68 50.0


User provided reference genes

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