Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 1.7e-31 138.7 66 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2137 Anthoceros agrestis HOM05D006672 ORTHO05D007769 7.0e-22 106.7 61 78.7
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 5.6e-11 70.5 65 47.7
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 2.8e-10 68.2 59 50.8
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 3.6e-10 67.8 59 49.2
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 4.7e-10 67.4 59 45.8
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 8.0e-10 66.6 59 50.8
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 8.0e-10 66.6 59 47.5
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 8.0e-10 66.6 59 47.5
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.0e-09 66.2 65 43.1
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.0e-09 66.2 65 43.1
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.0e-09 66.2 65 43.1
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 1.0e-09 66.2 59 47.5
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 1.0e-09 66.2 59 45.8
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 1.0e-09 66.2 59 49.2
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 1.0e-09 66.2 58 48.3
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 1.0e-09 66.2 63 44.4
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 1.0e-09 66.2 65 43.1
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 1.4e-09 65.9 65 40.0
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.4e-09 65.9 65 43.1
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 1.4e-09 65.9 59 45.8
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 1.4e-09 65.9 59 45.8
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 1.4e-09 65.9 59 50.8
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.4e-09 65.9 64 43.8
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 1.8e-09 65.5 59 47.5
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 1.8e-09 65.5 65 41.5
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 2.3e-09 65.1 59 45.8
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.3e-09 65.1 62 43.5
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 2.3e-09 65.1 58 44.8
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 2.3e-09 65.1 58 44.8
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 2.3e-09 65.1 58 44.8
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 3.1e-09 64.7 59 44.1
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 3.1e-09 64.7 58 48.3
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 3.1e-09 64.7 58 48.3
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 3.1e-09 64.7 58 44.8
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 3.1e-09 64.7 65 40.0
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 3.1e-09 64.7 59 45.8
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 4.0e-09 64.3 62 43.5
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 4.0e-09 64.3 59 44.1
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 4.0e-09 64.3 59 44.1
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 4.0e-09 64.3 59 44.1
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 4.0e-09 64.3 58 43.1
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 4.0e-09 64.3 58 43.1
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 4.0e-09 64.3 59 44.1
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 5.2e-09 63.9 58 44.8
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 5.2e-09 63.9 58 44.8
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 5.2e-09 63.9 58 46.6
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 5.2e-09 63.9 58 48.3
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 6.8e-09 63.5 63 41.3
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 6.8e-09 63.5 58 48.3
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 6.8e-09 63.5 58 48.3
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 6.8e-09 63.5 58 48.3
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 6.8e-09 63.5 58 48.3
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 6.8e-09 63.5 58 43.1
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 6.8e-09 63.5 58 48.3
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 6.8e-09 63.5 58 48.3
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 6.8e-09 63.5 59 42.4
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 6.8e-09 63.5 58 43.1
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 6.8e-09 63.5 58 43.1
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 6.8e-09 63.5 58 44.8
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 6.8e-09 63.5 58 44.8
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 8.9e-09 63.2 58 48.3
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 8.9e-09 63.2 59 42.4
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 8.9e-09 63.2 58 44.8
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 8.9e-09 63.2 59 45.8
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 8.9e-09 63.2 58 44.8
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 1.2e-08 62.8 58 43.1
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 1.2e-08 62.8 58 46.6
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 1.2e-08 62.8 58 46.6
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 1.2e-08 62.8 65 40.0
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 1.5e-08 62.4 58 46.6
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 1.5e-08 62.4 58 46.6
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 2.0e-08 62.0 61 41.0
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 2.0e-08 62.0 58 46.6
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.0e-08 62.0 59 40.7
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 2.6e-08 61.6 69 40.6
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 2.6e-08 61.6 63 41.3
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 3.4e-08 61.2 58 43.1
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 3.4e-08 61.2 58 43.1
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 3.4e-08 61.2 58 43.1
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 3.4e-08 61.2 58 43.1
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 3.4e-08 61.2 58 43.1
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 3.4e-08 61.2 58 43.1
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 3.4e-08 61.2 58 44.8
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 3.4e-08 61.2 65 40.0
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 5.8e-08 60.5 58 43.1
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 5.8e-08 60.5 63 39.7
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 5.8e-08 60.5 58 43.1
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 5.8e-08 60.5 58 41.4
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 7.5e-08 60.1 58 41.4
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 7.5e-08 60.1 58 41.4
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 7.5e-08 60.1 58 41.4
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 7.5e-08 60.1 58 41.4
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 7.5e-08 60.1 58 41.4
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 7.5e-08 60.1 58 41.4
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 7.5e-08 60.1 58 41.4
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 7.5e-08 60.1 58 41.4
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 7.5e-08 60.1 58 43.1
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 7.5e-08 60.1 58 43.1
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 9.8e-08 59.7 58 41.4
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 9.8e-08 59.7 58 41.4
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 1.3e-07 59.3 58 41.4
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 4.9e-07 57.4 58 41.4
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 6.4e-07 57.0 65 35.4
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 4.1e-06 54.3 59 37.3
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 9.2e-06 53.1 50 44.0


User provided reference genes

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