Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0140s0025 Marchantia polymorpha HOM05D002585 ORTHO05D002917 2.7e-277 958.0 460 100.0
Pp3c26_11640 Physcomitrium patens HOM05D002585 ORTHO05D002917 4.5e-152 542.0 455 58.7
SMO356G0713 Selaginella moellendorffii HOM05D002585 ORTHO05D002917 2.3e-148 529.6 441 58.3
AagrBONN_evm.TU.Sc2ySwM_228.740 Anthoceros agrestis HOM05D002585 ORTHO05D002917 1.4e-71 274.6 298 49.0
AagrBONN_evm.TU.Sc2ySwM_228.745 Anthoceros agrestis HOM05D002585 ORTHO05D002917 2.2e-53 214.2 232 47.4
Sopen10g033280 Solanum pennellii HOM05D002585 ORTHO05D002917 4.0e-39 166.8 457 29.1
Solyc10g083840.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 6.8e-39 166.0 457 29.1
AagrBONN_evm.TU.Sc2ySwM_344.424 Anthoceros agrestis HOM05D002585 ORTHO05D002917 9.8e-38 162.2 459 28.8
CAN.G541.44 Capsicum annuum HOM05D002585 ORTHO05D002917 2.2e-37 161.0 452 27.4
Lalb_Chr21g0315161 Lupinus albus HOM05D002585 ORTHO05D002917 2.2e-37 161.0 455 25.5
SalBow5G4367 Salvia bowleyana HOM05D002585 ORTHO05D002917 6.3e-37 159.5 457 27.1
Nitab4.5_0005208g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 8.3e-37 159.1 440 29.5
SalBow5G3646 Salvia bowleyana HOM05D002585 ORTHO05D002917 8.3e-37 159.1 457 26.9
Glyma.10G060200 Glycine max HOM05D002585 ORTHO05D002917 5.4e-36 156.4 450 26.2
Psat6g076360 Pisum sativum HOM05D002585 ORTHO05D002917 1.2e-35 155.2 375 27.7
EL10Ac7g16696 Beta vulgaris HOM05D002585 ORTHO05D002917 1.6e-35 154.8 460 29.1
vmacro07324 Vaccinium macrocarpon HOM05D002585 ORTHO05D002917 1.6e-35 154.8 453 28.7
Ca_11569_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 2.7e-35 154.1 441 27.2
Medtr1g062620 Medicago truncatula HOM05D002585 ORTHO05D002917 3.5e-35 153.7 447 26.0
ECA233G1422 Erigeron canadensis HOM05D002585 ORTHO05D002917 5.9e-35 152.9 451 28.2
QL07p042117 Quercus lobata HOM05D002585 ORTHO05D002917 1.0e-34 152.1 435 27.4
MELO3C024486.2 Cucumis melo HOM05D002585 ORTHO05D002917 1.3e-34 151.8 451 27.9
Phvul.007G152500 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 1.3e-34 151.8 449 26.7
Gohir.D04G108400 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.7e-34 151.4 447 28.0
Gohir.A04G069800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.3e-34 151.0 452 27.7
PGSC0003DMG400028277 Solanum tuberosum HOM05D002585 ORTHO05D002917 2.9e-34 150.6 448 27.7
COL.COLO4_26904 Corchorus olitorius HOM05D002585 ORTHO05D002917 3.8e-34 150.2 447 28.0
Nitab4.5_0000132g0480 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.8e-34 150.2 447 29.1
Mapoly0093s0034 Marchantia polymorpha HOM05D002585 ORTHO05D002917 8.6e-34 149.1 416 28.8
AUR62026959 Chenopodium quinoa HOM05D002585 ORTHO05D002917 1.1e-33 148.7 466 28.8
Gorai.009G412500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.1e-33 148.7 447 27.7
Psat6g075720 Pisum sativum HOM05D002585 ORTHO05D002917 1.5e-33 148.3 384 28.1
Actinidia28922 Actinidia chinensis HOM05D002585 ORTHO05D002917 1.9e-33 147.9 438 26.9
Cc06_g04600 Coffea canephora HOM05D002585 ORTHO05D002917 1.9e-33 147.9 451 27.5
Medtr0417s0020 Medicago truncatula HOM05D002585 ORTHO05D002917 2.5e-33 147.5 448 25.2
Sopen10g033290 Solanum pennellii HOM05D002585 ORTHO05D002917 2.5e-33 147.5 452 28.8
Duzib093G2252 Durio zibethinus HOM05D002585 ORTHO05D002917 3.3e-33 147.1 430 28.4
TWI53G0795 Tripterygium wilfordii HOM05D002585 ORTHO05D002917 3.3e-33 147.1 447 27.5
CSS0049154 Camellia sinensis var. sinensis HOM05D002585 ORTHO05D002917 4.3e-33 146.7 443 26.0
CsaV3_6G040120 Cucumis sativus L. HOM05D002585 ORTHO05D002917 4.3e-33 146.7 449 25.4
Pp3c20_2470 Physcomitrium patens HOM05D002585 ORTHO05D002917 4.3e-33 146.7 462 29.2
Thecc.05G072300 Theobroma cacao HOM05D002585 ORTHO05D002917 4.3e-33 146.7 430 28.8
MELO3C024485.2 Cucumis melo HOM05D002585 ORTHO05D002917 5.6e-33 146.4 449 25.6
Medtr1g062470 Medicago truncatula HOM05D002585 ORTHO05D002917 5.6e-33 146.4 385 29.4
CANSAT80G2890 Cannabis sativa HOM05D002585 ORTHO05D002917 7.3e-33 146.0 448 26.1
Oeu041475.1 Olea europaea HOM05D002585 ORTHO05D002917 7.3e-33 146.0 459 25.1
AUR62041382 Chenopodium quinoa HOM05D002585 ORTHO05D002917 9.5e-33 145.6 400 29.8
Psat0s3029g0040 Pisum sativum HOM05D002585 ORTHO05D002917 1.2e-32 145.2 426 26.8
ClCG04G009500 Citrullus lanatus HOM05D002585 ORTHO05D002917 1.6e-32 144.8 449 26.7
HanXRQChr05g0144541 Helianthus annuus HOM05D002585 ORTHO05D002917 2.1e-32 144.4 453 26.7
CANSAT80G1527 Cannabis sativa HOM05D002585 ORTHO05D002917 3.6e-32 143.7 448 25.9
Prupe.7G124800 Prunus persica HOM05D002585 ORTHO05D002917 3.6e-32 143.7 449 26.3
GSVIVG01033692001 Vitis vinifera HOM05D002585 ORTHO05D002917 3.6e-32 143.7 455 25.9
Ah.15g091400 Amaranthus hybridus HOM05D002585 ORTHO05D002917 6.1e-32 142.9 447 28.2
Medtr3g035970 Medicago truncatula HOM05D002585 ORTHO05D002917 8.0e-32 142.5 451 25.9
RcHm_v2.0_Chr5g0018301 Rosa chinensis HOM05D002585 ORTHO05D002917 8.0e-32 142.5 446 25.8
CsaV3_6G040130 Cucumis sativus L. HOM05D002585 ORTHO05D002917 1.0e-31 142.1 450 26.0
PSO063G7003 Papaver somniferum HOM05D002585 ORTHO05D002917 1.0e-31 142.1 454 26.9
CANSAT35G1791 Cannabis sativa HOM05D002585 ORTHO05D002917 1.4e-31 141.7 442 26.7
Sed0002653 Sechium edule HOM05D002585 ORTHO05D002917 1.4e-31 141.7 395 26.8
Migut.L01723 Erythranthe guttata HOM05D002585 ORTHO05D002917 1.8e-31 141.4 454 25.6
PGSC0003DMG400028276 Solanum tuberosum HOM05D002585 ORTHO05D002917 3.0e-31 140.6 369 30.4
DCAR_015012 Daucus carota HOM05D002585 ORTHO05D002917 4.0e-31 140.2 453 25.6
FAN02G4184 Fragaria x ananassa HOM05D002585 ORTHO05D002917 4.0e-31 140.2 455 25.9
FAN05G4117 Fragaria x ananassa HOM05D002585 ORTHO05D002917 5.2e-31 139.8 449 25.2
Cfa021472 Carpinus fangiana HOM05D002585 ORTHO05D002917 6.8e-31 139.4 456 26.1
Ciclev10011061m.g Citrus clementina HOM05D002585 ORTHO05D002917 6.8e-31 139.4 437 26.3
FvH4_6g16930 Fragaria vesca HOM05D002585 ORTHO05D002917 6.8e-31 139.4 449 25.2
FAN14G4746 Fragaria x ananassa HOM05D002585 ORTHO05D002917 6.8e-31 139.4 449 25.2
Peaxi162Scf02002g00013 Petunia axillaris HOM05D002585 ORTHO05D002917 6.8e-31 139.4 386 27.7
Hma1.2p1_0547F.1_g176480 Hydrangea macrophylla HOM05D002585 ORTHO05D002917 8.9e-31 139.0 449 25.6
Lj5g0002795 Lotus japonicus HOM05D002585 ORTHO05D002917 8.9e-31 139.0 451 25.7
VMungo0720G3162 Vigna mungo HOM05D002585 ORTHO05D002917 8.9e-31 139.0 503 24.1
Dinv35818 Davidia involucrata HOM05D002585 ORTHO05D002917 1.2e-30 138.7 374 28.1
RcHm_v2.0_Chr3g0470971 Rosa chinensis HOM05D002585 ORTHO05D002917 1.2e-30 138.7 448 26.3
Hund20555 Selenicereus undatus HOM05D002585 ORTHO05D002917 1.2e-30 138.7 449 26.7
FAN05G4263 Fragaria x ananassa HOM05D002585 ORTHO05D002917 1.5e-30 138.3 449 24.9
Sed0005893 Sechium edule HOM05D002585 ORTHO05D002917 1.5e-30 138.3 394 25.9
CiPaw.09G003100 Carya illinoinensis HOM05D002585 ORTHO05D002917 2.0e-30 137.9 447 25.7
Atru.chr8.1743 Acer truncatum HOM05D002585 ORTHO05D002917 2.6e-30 137.5 442 27.4
MSTRG.26675 Avicennia marina HOM05D002585 ORTHO05D002917 2.6e-30 137.5 454 25.8
Carub.0005s1971 Capsella rubella HOM05D002585 ORTHO05D002917 3.4e-30 137.1 446 26.2
Cfa026822 Carpinus fangiana HOM05D002585 ORTHO05D002917 4.4e-30 136.7 472 26.7
Thhalv10010120m.g Eutrema salsugineum HOM05D002585 ORTHO05D002917 4.4e-30 136.7 446 26.2
Pp3c1_32960 Physcomitrium patens HOM05D002585 ORTHO05D002917 4.4e-30 136.7 447 24.8
Nn6g35210 Nelumbo nucifera HOM05D002585 ORTHO05D002917 7.5e-30 136.0 403 27.0
Dinv37345 Davidia involucrata HOM05D002585 ORTHO05D002917 1.7e-29 134.8 455 25.5
Eucgr.A01617 Eucalyptus grandis HOM05D002585 ORTHO05D002917 1.7e-29 134.8 442 24.9
Peaxi162Scf00837g00009 Petunia axillaris HOM05D002585 ORTHO05D002917 1.7e-29 134.8 443 26.4
HPP92_008392 Vanilla planifolia HOM05D002585 ORTHO05D002917 1.7e-29 134.8 455 25.1
Lsat_1_v5_gn_8_145640 Lactuca sativa HOM05D002585 ORTHO05D002917 2.9e-29 134.0 437 25.9
Aa31LG10G8350 Aethionema arabicum HOM05D002585 ORTHO05D002917 3.7e-29 133.7 394 26.9
Medtr1g062430 Medicago truncatula HOM05D002585 ORTHO05D002917 6.4e-29 132.9 407 26.3
BolC6t37286H Brassica oleracea HOM05D002585 ORTHO05D002917 8.3e-29 132.5 442 26.0
BraA07t29828Z Brassica rapa HOM05D002585 ORTHO05D002917 8.3e-29 132.5 442 26.0
PSO339G5475 Papaver somniferum HOM05D002585 ORTHO05D002917 8.3e-29 132.5 454 26.4
BcaC08g44624 Brassica carinata HOM05D002585 ORTHO05D002917 1.1e-28 132.1 442 26.0
C06p21020 Brassica napus HOM05D002585 ORTHO05D002917 1.1e-28 132.1 442 26.0
unitig_8.g4719 Utricularia gibba HOM05D002585 ORTHO05D002917 1.1e-28 132.1 462 24.2
Zm00001eb046790 Zea mays HOM05D002585 ORTHO05D002917 1.1e-28 132.1 465 25.8
ATR0043G008 Amborella trichopoda HOM05D002585 ORTHO05D002917 1.4e-28 131.7 448 27.0
BcaB01g00304 Brassica carinata HOM05D002585 ORTHO05D002917 1.4e-28 131.7 394 26.9
Gohir.D01G129800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.4e-28 131.7 450 25.3
Pp3c14_19260 Physcomitrium patens HOM05D002585 ORTHO05D002917 1.8e-28 131.3 454 23.8
PRCOL_00005521 Prasinoderma coloniale HOM05D002585 ORTHO05D002917 1.8e-28 131.3 467 25.7
TAR369G0251 Trochodendron aralioides HOM05D002585 ORTHO05D002917 1.8e-28 131.3 451 25.9
AL5G34060 Arabidopsis lyrata HOM05D002585 ORTHO05D002917 2.4e-28 131.0 397 27.7
A07p21410 Brassica napus HOM05D002585 ORTHO05D002917 2.4e-28 131.0 446 26.5
arahy.Tifrunner.gnm1.ann1.7YQ2TW Arachis hypogaea HOM05D002585 ORTHO05D002917 3.2e-28 130.6 419 25.8
A09p46170 Brassica napus HOM05D002585 ORTHO05D002917 3.2e-28 130.6 445 25.4
arahy.Tifrunner.gnm1.ann1.YR6AFM Arachis hypogaea HOM05D002585 ORTHO05D002917 5.4e-28 129.8 420 26.4
BraA09t40081Z Brassica rapa HOM05D002585 ORTHO05D002917 5.4e-28 129.8 445 25.2
PGR004G2132 Punica granatum HOM05D002585 ORTHO05D002917 5.4e-28 129.8 450 25.3
Manes.08G013700 Manihot esculenta HOM05D002585 ORTHO05D002917 7.0e-28 129.4 442 24.4
BcaC07g39674 Brassica carinata HOM05D002585 ORTHO05D002917 9.2e-28 129.0 395 26.8
BolC8t50450H Brassica oleracea HOM05D002585 ORTHO05D002917 9.2e-28 129.0 446 25.3
Sed0022969 Sechium edule HOM05D002585 ORTHO05D002917 1.2e-27 128.6 400 26.8
Solyc10g083850.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.2e-27 128.6 436 27.3
C08p28400 Brassica napus HOM05D002585 ORTHO05D002917 1.6e-27 128.3 445 24.9
Manes.08G013600 Manihot esculenta HOM05D002585 ORTHO05D002917 7.8e-27 125.9 449 24.9
Aqoxy195s007 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 1.0e-26 125.6 467 24.2
Aqoxy1G01087 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 1.0e-26 125.6 467 24.2
AT3G53180 Arabidopsis thaliana HOM05D002585 ORTHO05D002917 1.0e-26 125.6 446 25.8
SGA_v2.0_scaffold224G42925 Striga asiatica HOM05D002585 ORTHO05D002917 1.3e-26 125.2 456 24.6
CARHR163130 Cardamine hirsuta HOM05D002585 ORTHO05D002917 2.3e-26 124.4 447 24.8
ClCG04G009510 Citrullus lanatus HOM05D002585 ORTHO05D002917 5.0e-26 123.2 353 27.8
Sed0005462 Sechium edule HOM05D002585 ORTHO05D002917 8.6e-26 122.5 450 24.7
QL07p042139 Quercus lobata HOM05D002585 ORTHO05D002917 1.9e-25 121.3 444 25.2
SMO367G0811 Selaginella moellendorffii HOM05D002585 ORTHO05D002917 2.5e-25 120.9 441 25.2
Peaxi162Scf00163g00216 Petunia axillaris HOM05D002585 ORTHO05D002917 4.3e-25 120.2 444 24.1
Haze_19443 Corylus avellana HOM05D002585 ORTHO05D002917 5.6e-25 119.8 385 27.5
Peaxi162Scf00110g00619 Petunia axillaris HOM05D002585 ORTHO05D002917 5.6e-25 119.8 285 30.5
Sopen06g005510 Solanum pennellii HOM05D002585 ORTHO05D002917 5.6e-25 119.8 438 25.6
THA.LOC104825825 Tarenaya hassleriana HOM05D002585 ORTHO05D002917 5.6e-25 119.8 394 25.9
arahy.Tifrunner.gnm1.ann1.7710RN Arachis hypogaea HOM05D002585 ORTHO05D002917 7.3e-25 119.4 377 25.5
Sed0020289 Sechium edule HOM05D002585 ORTHO05D002917 7.3e-25 119.4 389 25.2
arahy.Tifrunner.gnm1.ann1.SIB7C5 Arachis hypogaea HOM05D002585 ORTHO05D002917 1.2e-24 118.6 378 26.2
Medtr1g062650 Medicago truncatula HOM05D002585 ORTHO05D002917 3.6e-24 117.1 453 23.6
Potri.006G121000 Populus trichocarpa HOM05D002585 ORTHO05D002917 8.0e-24 115.9 446 25.6
Mapoly0010s0006 Marchantia polymorpha HOM05D002585 ORTHO05D002917 1.8e-23 114.8 442 25.8
PGSC0003DMG400028171 Solanum tuberosum HOM05D002585 ORTHO05D002917 1.8e-23 114.8 469 23.9
Lj3A991G23 Lonicera japonica HOM05D002585 ORTHO05D002917 2.3e-23 114.4 366 25.4
Psat6g071560 Pisum sativum HOM05D002585 ORTHO05D002917 2.3e-23 114.4 366 24.0
Gorai.002G160800 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.1e-23 114.0 458 24.7
MBI17_g25733_MAGBIO Magnolia biondii HOM05D002585 ORTHO05D002917 3.1e-23 114.0 469 24.5
Rhsim03G0088700 Rhododendron simsii HOM05D002585 ORTHO05D002917 3.1e-23 114.0 481 23.9
Sp5g09150 Schrenkiella parvula HOM05D002585 ORTHO05D002917 2.0e-22 111.3 442 23.8
Sabra06G0095200 Salix brachista HOM05D002585 ORTHO05D002917 2.6e-22 110.9 377 25.2
Sopen10g033020 Solanum pennellii HOM05D002585 ORTHO05D002917 4.4e-22 110.2 444 22.7
Solyc10g083550.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 7.5e-22 109.4 380 23.9
SHI27841 Sapria himalayana HOM05D002585 ORTHO05D002917 1.7e-21 108.2 362 28.2
Pp3c21_9940 Physcomitrium patens HOM05D002585 ORTHO05D002917 2.2e-21 107.8 434 24.9
CAN.G1138.22 Capsicum annuum HOM05D002585 ORTHO05D002917 2.9e-21 107.5 378 24.3
Nitab4.5_0000963g0030 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.9e-21 107.5 442 23.8
Pp3c22_1270 Physcomitrium patens HOM05D002585 ORTHO05D002917 3.2e-20 104.0 443 24.4
FAN09G3171 Fragaria x ananassa HOM05D002585 ORTHO05D002917 4.6e-19 100.1 244 27.9
AagrBONN_evm.TU.Sc2ySwM_228.744 Anthoceros agrestis HOM05D002585 ORTHO05D002917 1.0e-18 99.0 124 43.5
Cre03.g146627 Chlamydomonas reinhardtii HOM05D002585 ORTHO05D002917 1.0e-18 99.0 555 21.4
Peaxi162Scf00110g00034 Petunia axillaris HOM05D002585 ORTHO05D002917 1.0e-18 99.0 333 25.8
Peaxi162Scf00837g00515 Petunia axillaris HOM05D002585 ORTHO05D002917 1.7e-18 98.2 254 28.3
MD00G1214800 Malus domestica HOM05D002585 ORTHO05D002917 3.0e-18 97.4 246 27.6
Cpa.g.sc5.155 Carica papaya HOM05D002585 ORTHO05D002917 5.0e-18 96.7 258 27.1
Nitab4.5_0000181g0090 Nicotiana tabacum HOM05D002585 ORTHO05D002917 6.6e-18 96.3 342 25.7
Sopen01g019530 Solanum pennellii HOM05D002585 ORTHO05D002917 6.2e-16 89.7 287 27.5
CBR_g37575 Chara braunii HOM05D002585 ORTHO05D002917 8.1e-16 89.4 314 23.9
Cfa024801 Carpinus fangiana HOM05D002585 ORTHO05D002917 5.8e-14 83.2 442 22.6
Peaxi162Scf00529g00035 Petunia axillaris HOM05D002585 ORTHO05D002917 1.3e-13 82.0 241 27.4
Solyc06g011330.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.3e-13 82.0 308 24.0
TPR.G21005 Trifolium pratense HOM05D002585 ORTHO05D002917 1.3e-13 82.0 237 27.4
Peaxi162Scf00110g00514 Petunia axillaris HOM05D002585 ORTHO05D002917 3.7e-13 80.5 247 24.7
Nitab4.5_0000132g0100 Nicotiana tabacum HOM05D002585 ORTHO05D002917 6.4e-13 79.7 447 22.1
ClCG00G006000 Citrullus lanatus HOM05D002585 ORTHO05D002917 3.2e-12 77.4 174 29.3
TPR.G30717 Trifolium pratense HOM05D002585 ORTHO05D002917 3.5e-11 73.9 205 25.4
CAN.G1006.10 Capsicum annuum HOM05D002585 ORTHO05D008991 1.7e-10 71.6 200 25.5
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.7e-10 71.6 124 29.8
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.3e-10 71.2 124 29.8
ClCG00G005960 Citrullus lanatus HOM05D002585 ORTHO05D002917 3.9e-10 70.5 173 29.5
Solyc01g056450.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 4.3e-09 67.0 255 24.3
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 7.3e-09 66.2 117 29.1
CBR_g51525 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-08 64.7 147 28.6
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.1e-08 64.7 117 28.2
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.5e-06 58.5 117 28.2


User provided reference genes

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