Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1308.9 669 100.0
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1202.6 669 93.6
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1090.1 671 84.6
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 5.1e-237 824.7 671 63.3
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 1.0e-232 810.4 669 62.3
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 1.8e-226 789.6 671 59.3
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 2.4e-226 789.3 671 59.3
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 4.5e-225 785.0 671 58.9
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 7.6e-225 784.3 671 59.3
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 2.2e-224 782.7 671 58.9
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 2.9e-224 782.3 671 59.0
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 1.9e-223 779.6 671 58.7
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 7.2e-223 777.7 671 58.7
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 2.1e-222 776.2 671 59.0
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 2.7e-222 775.8 671 58.6
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 2.7e-222 775.8 671 58.6
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 2.3e-221 772.7 671 58.3
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 2.3e-221 772.7 671 58.6
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 3.9e-221 771.9 671 57.8
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 5.1e-221 771.5 671 58.3
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 8.7e-221 770.8 671 58.0
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 1.1e-220 770.4 671 58.1
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 1.1e-220 770.4 671 58.0
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 1.1e-220 770.4 671 57.5
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 1.5e-220 770.0 671 58.0
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 1.5e-220 770.0 671 58.0
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 1.5e-220 770.0 671 57.7
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 1.9e-220 769.6 671 58.0
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 1.9e-220 769.6 671 58.0
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 1.9e-220 769.6 671 58.3
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 3.3e-220 768.8 671 58.0
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 3.3e-220 768.8 671 57.7
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 4.3e-220 768.5 671 58.0
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 5.7e-220 768.1 671 57.7
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 5.7e-220 768.1 671 58.0
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 5.7e-220 768.1 671 57.2
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 9.7e-220 767.3 671 58.0
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 9.7e-220 767.3 671 57.2
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 1.3e-219 766.9 671 57.4
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 3.7e-219 765.4 681 57.4
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 6.3e-219 764.6 671 57.1
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 6.3e-219 764.6 671 58.0
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 1.1e-218 763.8 671 57.1
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 1.4e-218 763.5 671 57.4
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 1.4e-218 763.5 671 57.4
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 1.8e-218 763.1 671 56.6
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 1.8e-218 763.1 671 57.8
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 2.4e-218 762.7 671 57.4
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 2.4e-218 762.7 671 57.5
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 2.4e-218 762.7 671 57.8
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 2.4e-218 762.7 670 57.5
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 3.1e-218 762.3 671 57.7
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 3.1e-218 762.3 671 57.5
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 6.9e-218 761.1 671 57.1
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 6.9e-218 761.1 671 56.9
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 9.1e-218 760.8 671 57.7
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 9.1e-218 760.8 671 57.4
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 1.2e-217 760.4 671 57.4
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 1.2e-217 760.4 671 57.2
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 2.6e-217 759.2 671 56.5
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 3.4e-217 758.8 671 57.2
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 3.4e-217 758.8 671 56.3
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 4.5e-217 758.4 671 57.2
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 5.9e-217 758.1 671 56.8
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 7.7e-217 757.7 671 57.2
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 7.7e-217 757.7 671 56.9
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 1.0e-216 757.3 671 57.5
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 2.2e-216 756.1 671 58.0
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 3.8e-216 755.4 671 56.8
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 8.5e-216 754.2 671 56.6
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 1.1e-215 753.8 671 56.8
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 1.4e-215 753.4 671 56.6
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 2.5e-215 752.7 671 57.1
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 3.2e-215 752.3 671 56.5
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 5.5e-215 751.5 671 56.0
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 9.4e-215 750.7 671 56.3
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 9.4e-215 750.7 671 56.8
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 1.2e-214 750.4 671 56.8
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 2.7e-214 749.2 671 56.0
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 4.6e-214 748.4 671 56.8
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 7.9e-214 747.7 671 56.3
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 1.4e-213 746.9 671 55.6
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 1.8e-213 746.5 670 57.2
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 2.3e-213 746.1 671 56.6
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 3.0e-213 745.7 670 56.4
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 3.0e-213 745.7 672 56.1
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 3.0e-213 745.7 672 56.1
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 3.9e-213 745.3 671 56.3
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 5.1e-213 745.0 671 55.3
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 5.1e-213 745.0 672 56.0
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 6.7e-213 744.6 671 56.2
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 1.5e-212 743.4 671 56.0
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 2.0e-212 743.0 672 56.4
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 2.6e-212 742.7 672 57.1
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 2.6e-212 742.7 671 56.0
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 3.3e-212 742.3 668 56.0
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 3.3e-212 742.3 671 55.9
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 3.3e-212 742.3 671 55.9
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 3.3e-212 742.3 671 56.2
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 4.4e-212 741.9 699 54.9
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 5.7e-212 741.5 671 56.0
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 7.4e-212 741.1 672 55.1
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 9.7e-212 740.7 671 55.7
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 1.3e-211 740.3 721 53.4
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 4.8e-211 738.4 696 54.7
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 6.3e-211 738.0 671 55.1
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 5.3e-210 734.9 671 55.7
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 6.9e-210 734.6 671 55.9
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 1.2e-209 733.8 671 55.7
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 2.6e-209 732.6 671 56.3
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 8.5e-208 727.6 671 56.5
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 1.1e-207 727.2 671 55.7
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 1.6e-206 723.4 671 56.2
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 2.3e-205 719.5 663 56.1
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 2.9e-200 702.6 667 53.2
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 2.0e-196 689.9 751 49.3
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 4.4e-196 688.7 599 57.6
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 1.7e-192 676.8 653 52.7
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 1.7e-192 676.8 781 47.1
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 5.7e-188 661.8 677 52.7
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 1.7e-176 623.6 689 49.1
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.5e-172 610.5 596 53.2
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 8.9e-165 584.7 673 47.1
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 1.2e-164 584.3 683 47.9
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 2.2e-163 580.1 669 46.9
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 4.9e-163 578.9 670 46.3
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 1.1e-162 577.8 669 46.8
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 1.2e-161 574.3 665 46.0
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 1.9e-154 550.4 636 46.5
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 1.9e-151 540.4 633 46.0
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 6.2e-142 508.8 619 44.3
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 6.9e-133 478.8 676 40.8
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 3.8e-131 473.0 436 54.8
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.4e-116 423.3 341 62.5
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 1.6e-113 414.5 340 62.1
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.1e-113 414.1 529 44.8
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 1.3e-107 394.8 337 61.4
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 5.7e-95 352.8 393 45.3
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.7e-94 351.3 328 54.0
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 7.7e-92 342.4 297 55.6
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 3.3e-87 327.0 395 45.1
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 1.3e-86 325.1 315 54.0
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 1.2e-79 302.0 268 55.2
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 2.6e-63 247.7 227 53.7
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 4.7e-57 226.9 231 50.2
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 3.3e-50 204.1 679 26.7
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.4e-45 188.0 649 25.6
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 1.0e-43 182.6 306 32.7
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 8.6e-43 179.5 645 25.9
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 2.8e-41 174.5 304 35.9
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 3.0e-35 154.5 226 38.1
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 2.8e-33 147.9 124 58.1
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.1e-29 136.0 216 41.2
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 7.1e-29 133.3 637 22.4
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 7.8e-20 103.2 288 24.3
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 1.3e-19 102.4 112 47.3
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 8.7e-19 99.8 670 19.6
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 4.8e-17 94.0 106 45.3
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 6.9e-16 90.1 266 29.3
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 9.9e-15 86.3 118 40.7
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 5.4e-13 80.5 66 56.1
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 5.4e-13 80.5 66 56.1
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 7.4e-10 70.1 59 57.6
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.8e-09 68.2 53 58.5
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 8.1e-09 66.6 61 52.5


User provided reference genes

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