Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 2167.9 1088 100.0
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1550.8 1009 75.0
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1472.2 1018 70.1
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1464.9 1031 68.8
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1464.1 1007 69.9
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1458.7 1015 70.0
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1455.7 1031 68.8
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1454.9 1033 68.3
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1454.1 1012 69.1
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1452.2 1014 68.7
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1451.8 1020 68.8
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1447.2 1015 69.2
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1446.0 1019 68.1
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1445.3 1014 68.5
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1444.1 1016 68.4
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1444.1 1018 68.5
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1442.6 1014 68.4
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1440.6 1027 67.3
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1439.9 1022 68.1
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1439.5 1027 67.3
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1437.6 1030 67.8
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1436.8 1027 67.1
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1436.4 982 70.4
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1435.2 1010 69.3
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1434.1 1002 69.3
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1433.3 1005 68.7
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1433.3 1023 67.8
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1432.9 1027 68.0
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1432.5 1026 67.9
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1431.0 1001 67.8
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1430.6 1035 67.4
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1429.5 1016 67.8
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1429.5 1017 67.6
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1429.1 1002 68.0
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1428.7 1021 67.1
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1426.4 1042 66.6
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1426.0 1009 67.7
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1425.6 1024 67.2
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1424.5 992 68.6
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1424.1 1021 67.4
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1424.1 1000 68.5
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1422.9 1002 67.7
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1422.9 1077 65.5
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1422.5 1002 68.3
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1421.8 1022 67.4
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1421.4 1036 67.0
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1420.6 987 68.3
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1418.7 1016 67.4
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1416.7 1025 66.5
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1416.7 1019 67.3
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1412.9 983 68.8
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1411.7 998 68.3
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1411.7 1073 64.7
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1411.4 1008 67.9
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1411.4 958 72.2
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1411.0 998 68.6
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1410.6 1016 67.0
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1409.8 1013 67.0
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1409.8 1068 65.2
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1408.7 1010 67.6
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1408.7 1031 66.1
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1407.5 1031 65.9
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1406.7 1025 66.6
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1406.7 1053 65.4
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1405.6 998 67.9
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1404.8 1052 65.7
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1404.8 1077 64.6
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1404.4 1014 67.4
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1404.0 1029 66.3
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1403.7 998 67.6
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1402.9 1054 65.8
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1401.7 1009 67.3
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1398.6 1009 67.5
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1398.6 1033 66.8
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1398.3 1070 65.2
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1397.9 1009 67.5
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1397.5 998 67.7
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1397.1 998 67.5
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1397.1 983 68.0
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1395.6 1019 66.6
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1394.4 998 67.7
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1394.4 998 67.7
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1393.6 997 67.3
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1393.3 1012 67.1
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1390.9 1055 65.8
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1385.9 1129 61.7
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1385.5 1018 65.9
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1379.8 1037 65.8
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1378.2 1024 65.0
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1377.8 1017 65.7
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1375.9 1063 64.4
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1374.4 1021 65.7
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1373.6 1020 65.8
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1371.7 1030 64.9
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1371.3 994 66.3
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1370.9 1026 65.1
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1370.9 1062 63.9
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1370.5 1022 65.9
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1368.2 1026 65.1
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1367.8 1031 66.1
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1365.1 1032 64.7
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1364.7 998 66.0
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1364.0 1037 64.3
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1359.4 1004 65.5
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1355.1 997 65.8
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1350.5 1107 61.4
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1345.5 1134 59.9
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1325.8 969 67.0
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1323.5 1024 63.0
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1316.6 1007 64.8
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1312.4 777 87.3
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1290.0 949 65.8
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1259.6 954 65.9
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1257.3 1039 60.5
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1244.6 914 66.1
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1235.3 869 67.4
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1161.0 1065 56.4
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1134.4 1004 55.6
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1133.2 1051 56.1
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1131.3 1051 56.0
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1106.3 999 55.9
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1089.7 801 65.0
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1089.3 671 84.6
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 3.8e-306 1055.0 789 65.3
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 5.9e-291 1004.6 1001 50.7
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 5.7e-286 988.0 674 71.7
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 3.7e-285 985.3 747 64.4
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 1.3e-269 933.7 722 63.4
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 5.5e-249 865.1 983 46.4
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 3.6e-248 862.4 738 57.7
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 8.9e-239 831.2 877 49.5
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 8.3e-237 824.7 824 53.5
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 6.6e-234 815.1 576 67.2
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 7.3e-209 731.9 596 60.9
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 3.9e-178 629.8 633 51.5
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 6.9e-175 619.0 405 72.8
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 5.5e-172 609.4 619 50.4
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 2.6e-161 573.9 413 70.0
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 1.3e-152 545.0 347 74.1
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 4.8e-144 516.5 529 52.4
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.7e-141 508.1 424 61.1
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 5.0e-133 479.9 347 69.7
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 1.6e-131 474.9 406 57.9
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 5.2e-130 469.9 400 60.2
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 1.8e-122 444.9 393 53.2
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.4e-121 440.7 342 62.3
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 2.8e-115 421.0 309 64.1
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 1.8e-114 418.3 351 60.4
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 7.5e-113 412.9 962 31.0
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 3.2e-111 407.5 948 31.1
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 3.5e-110 404.1 397 51.9
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.9e-103 381.7 233 83.3
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 4.2e-95 354.0 955 28.2
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.1e-94 351.7 912 30.7
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.1e-92 345.9 232 72.0
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 7.9e-78 296.6 227 62.1
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.0e-77 294.7 154 86.4
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 3.6e-54 218.0 883 22.8
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 3.9e-45 188.0 332 30.1
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 2.2e-43 182.2 463 29.2
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 1.5e-41 176.0 222 41.4
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 7.7e-41 173.7 152 57.9
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 1.4e-39 169.5 124 65.3
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 9.4e-39 166.8 304 35.2
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 6.7e-37 160.6 276 35.5
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 1.8e-34 152.5 150 48.7
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.3e-32 146.4 216 44.4
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 4.2e-31 141.4 154 49.4
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 4.0e-29 134.8 148 46.6
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 1.2e-25 123.2 132 50.8
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 3.2e-23 115.2 428 24.8
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 4.2e-23 114.8 106 52.8
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 1.6e-22 112.8 282 28.0
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 1.1e-18 100.1 78 57.7
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 1.8e-18 99.4 86 59.3
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.6e-09 69.7 83 44.6
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 3.5e-09 68.6 54 55.6
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 4.5e-09 68.2 59 55.9
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 7.3e-07 60.8 50 54.0


User provided reference genes

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