Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0138s0005 Marchantia polymorpha HOM05D006418 ORTHO05D008063 1.2e-199 699.5 335 100.0
Pp3c15_5030 Physcomitrium patens HOM05D006418 ORTHO05D008063 2.7e-130 469.2 315 68.9
AagrBONN_evm.TU.Sc2ySwM_344.2134 Anthoceros agrestis HOM05D006418 ORTHO05D008063 2.0e-125 453.0 298 69.5
arahy.Tifrunner.gnm1.ann1.K1NG1D Arachis hypogaea HOM05D006418 ORTHO05D008063 5.0e-124 448.4 292 72.3
TPR.G17586 Trifolium pratense HOM05D006418 ORTHO05D008063 1.1e-123 447.2 289 72.7
Potri.002G153100 Populus trichocarpa HOM05D006418 ORTHO05D008063 1.9e-123 446.4 299 69.9
Dinv32422 Davidia involucrata HOM05D006418 ORTHO05D008063 2.5e-123 446.0 292 70.9
Sabra02G0121400 Salix brachista HOM05D006418 ORTHO05D008063 4.2e-123 445.3 299 69.2
GSVIVG01027527001 Vitis vinifera HOM05D006418 ORTHO05D008063 1.6e-122 443.4 310 68.1
TAR375G0873 Trochodendron aralioides HOM05D006418 ORTHO05D008063 2.7e-122 442.6 292 70.5
FvH4_7g13130 Fragaria vesca HOM05D006418 ORTHO05D008063 7.9e-122 441.0 304 67.4
FAN06G0540 Fragaria x ananassa HOM05D006418 ORTHO05D008063 7.9e-122 441.0 304 67.4
FAN06G3976 Fragaria x ananassa HOM05D006418 ORTHO05D008063 7.9e-122 441.0 304 67.4
ClCG05G001910 Citrullus lanatus HOM05D006418 ORTHO05D008063 1.0e-121 440.7 304 68.4
THA.LOC104827683 Tarenaya hassleriana HOM05D006418 ORTHO05D008063 1.0e-121 440.7 307 67.8
FAN10G2923 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.4e-121 440.3 304 67.1
vmacro13338 Vaccinium macrocarpon HOM05D006418 ORTHO05D008063 1.4e-121 440.3 292 70.2
Lj3g0006580 Lotus japonicus HOM05D006418 ORTHO05D008063 1.8e-121 439.9 292 71.6
CSS0035566 Camellia sinensis var. sinensis HOM05D006418 ORTHO05D008063 3.0e-121 439.1 292 70.2
FAN03G2411 Fragaria x ananassa HOM05D006418 ORTHO05D008063 5.2e-121 438.3 304 66.8
Glyma.03G017600 Glycine max HOM05D006418 ORTHO05D008063 5.2e-121 438.3 289 70.9
Actinidia38288 Actinidia chinensis HOM05D006418 ORTHO05D008063 6.7e-121 438.0 307 67.4
Carub.0005s2773 Capsella rubella HOM05D006418 ORTHO05D008063 6.7e-121 438.0 304 68.4
Medtr8g032700 Medicago truncatula HOM05D006418 ORTHO05D008063 6.7e-121 438.0 289 71.6
Aa31LG10G15180 Aethionema arabicum HOM05D006418 ORTHO05D008063 1.1e-120 437.2 300 69.0
CANSAT56G2190 Cannabis sativa HOM05D006418 ORTHO05D008063 1.1e-120 437.2 306 67.3
Ca_23755_v3 Cicer arietinum L. HOM05D006418 ORTHO05D008063 1.1e-120 437.2 289 71.3
Duzib138G1515 Durio zibethinus HOM05D006418 ORTHO05D008063 1.1e-120 437.2 304 67.4
FAN01G2003 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.1e-120 437.2 304 66.4
Nitab4.5_0010430g0060 Nicotiana tabacum HOM05D006418 ORTHO05D008063 2.0e-120 436.4 310 65.5
Rhsim07G0021100 Rhododendron simsii HOM05D006418 ORTHO05D008063 2.0e-120 436.4 301 68.4
MD07G1128500 Malus domestica HOM05D006418 ORTHO05D008063 2.6e-120 436.0 304 66.1
ECA236G1148 Erigeron canadensis HOM05D006418 ORTHO05D008063 3.3e-120 435.6 289 70.2
Lalb_Chr10g0097531 Lupinus albus HOM05D006418 ORTHO05D008063 3.3e-120 435.6 289 70.2
RcHm_v2.0_Chr1g0352261 Rosa chinensis HOM05D006418 ORTHO05D008063 3.3e-120 435.6 304 66.1
Aqoxy5G03975 Aquilegia oxysepala HOM05D006418 ORTHO05D008063 5.7e-120 434.9 289 69.2
HanXRQChr06g0169031 Helianthus annuus HOM05D006418 ORTHO05D008063 7.4e-120 434.5 292 68.5
Hund27325 Selenicereus undatus HOM05D006418 ORTHO05D008063 7.4e-120 434.5 292 69.2
ATR0757G200 Amborella trichopoda HOM05D006418 ORTHO05D008063 9.7e-120 434.1 289 69.2
CiPaw.01G053600 Carya illinoinensis HOM05D006418 ORTHO05D008063 9.7e-120 434.1 293 69.3
Lj7A519G38 Lonicera japonica HOM05D006418 ORTHO05D008063 9.7e-120 434.1 289 69.6
Cfa004182 Carpinus fangiana HOM05D006418 ORTHO05D008063 1.7e-119 433.3 292 69.9
Eucgr.E00217 Eucalyptus grandis HOM05D006418 ORTHO05D008063 2.2e-119 433.0 302 67.2
COL.COLO4_12625 Corchorus olitorius HOM05D006418 ORTHO05D008063 2.8e-119 432.6 301 66.4
CBR_g38943 Chara braunii HOM05D006418 ORTHO05D008063 3.7e-119 432.2 287 71.1
Sopen01g037560 Solanum pennellii HOM05D006418 ORTHO05D008063 4.8e-119 431.8 292 68.8
TWI59G1449 Tripterygium wilfordii HOM05D006418 ORTHO05D008063 4.8e-119 431.8 292 69.2
CAN.G170.50 Capsicum annuum HOM05D006418 ORTHO05D008063 6.3e-119 431.4 292 68.5
VMungo0331G0376 Vigna mungo HOM05D006418 ORTHO05D008063 6.3e-119 431.4 292 69.2
SMO356G0133 Selaginella moellendorffii HOM05D006418 ORTHO05D008063 8.2e-119 431.0 289 67.5
Thhalv10006098m.g Eutrema salsugineum HOM05D006418 ORTHO05D008063 1.1e-118 430.6 304 67.1
EL10Ac1g00963 Beta vulgaris HOM05D006418 ORTHO05D008063 1.4e-118 430.3 296 67.6
Cc02_g37230 Coffea canephora HOM05D006418 ORTHO05D008063 1.4e-118 430.3 317 65.3
Ciclev10021113m.g Citrus clementina HOM05D006418 ORTHO05D008063 1.8e-118 429.9 304 65.8
Peaxi162Scf00021g00525 Petunia axillaris HOM05D006418 ORTHO05D008063 1.8e-118 429.9 292 68.5
Solyc01g091780.4 Solanum lycopersicum HOM05D006418 ORTHO05D008063 2.4e-118 429.5 292 68.5
AL5G43290 Arabidopsis lyrata HOM05D006418 ORTHO05D008063 3.1e-118 429.1 292 68.8
Nn1g01350 Nelumbo nucifera HOM05D006418 ORTHO05D008063 3.1e-118 429.1 327 62.1
PGSC0003DMG400017054 Solanum tuberosum HOM05D006418 ORTHO05D008063 7.0e-118 427.9 292 68.2
CARHR171390 Cardamine hirsuta HOM05D006418 ORTHO05D008063 9.1e-118 427.6 301 67.4
Hma1.2p1_0033F.1_g020630 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 9.1e-118 427.6 292 68.2
Phvul.010G092700 Phaseolus vulgaris HOM05D006418 ORTHO05D008063 2.0e-117 426.4 289 68.5
Gohir.D11G089100 Gossypium hirsutum HOM05D006418 ORTHO05D008063 2.6e-117 426.0 301 64.8
PSO063G7157 Papaver somniferum HOM05D006418 ORTHO05D008063 3.5e-117 425.6 292 68.8
DCAR_025170 Daucus carota HOM05D006418 ORTHO05D008063 7.7e-117 424.5 298 67.8
Migut.B01688 Erythranthe guttata HOM05D006418 ORTHO05D008063 1.7e-116 423.3 292 68.8
Gorai.007G095100 Gossypium raimondii HOM05D006418 ORTHO05D008063 1.7e-116 423.3 301 64.5
AT3G61080 Arabidopsis thaliana HOM05D006418 ORTHO05D008063 5.0e-116 421.8 292 67.5
Zm00001eb001200 Zea mays HOM05D006418 ORTHO05D008063 5.0e-116 421.8 297 66.0
PGR042G1311 Punica granatum HOM05D006418 ORTHO05D008063 1.5e-115 420.2 311 65.3
Sp5g02280 Schrenkiella parvula HOM05D006418 ORTHO05D008063 1.5e-115 420.2 304 65.5
BcaC08g45098 Brassica carinata HOM05D006418 ORTHO05D008063 5.5e-115 418.3 304 66.1
CiPaw.01G023800 Carya illinoinensis HOM05D006418 ORTHO05D008063 3.6e-114 415.6 295 66.8
BcaB02g07390 Brassica carinata HOM05D006418 ORTHO05D008063 6.1e-114 414.8 333 61.9
HPP92_014577 Vanilla planifolia HOM05D006418 ORTHO05D008063 1.0e-113 414.1 292 65.8
C06p27060 Brassica napus HOM05D006418 ORTHO05D008063 6.7e-113 411.4 311 64.6
BolC6t37878H Brassica oleracea HOM05D006418 ORTHO05D008063 6.7e-113 411.4 311 64.6
Os03g0117800 Oryza sativa ssp. japonica HOM05D006418 ORTHO05D008063 6.7e-113 411.4 320 60.6
A07p25300 Brassica napus HOM05D006418 ORTHO05D008063 8.8e-113 411.0 311 65.0
BraA07t30173Z Brassica rapa HOM05D006418 ORTHO05D008063 8.8e-113 411.0 311 64.6
Nitab4.5_0004550g0130 Nicotiana tabacum HOM05D006418 ORTHO05D008063 3.3e-112 409.1 321 61.4
MELO3C006151.2 Cucumis melo HOM05D006418 ORTHO05D008063 2.4e-110 402.9 361 57.6
SalBow3G2367 Salvia bowleyana HOM05D006418 ORTHO05D008063 7.7e-109 397.9 292 64.7
CDE01G0065 Ceratophyllum demersum HOM05D006418 ORTHO05D008063 7.5e-104 381.3 284 63.7
Manes.01G262400 Manihot esculenta HOM05D006418 ORTHO05D008063 8.6e-100 367.9 248 69.4
Thecc.01G368600 Theobroma cacao HOM05D006418 ORTHO05D008063 8.6e-100 367.9 262 65.3
CsaV3_3G009310 Cucumis sativus L. HOM05D006418 ORTHO05D008063 2.3e-97 359.8 238 71.0
Psat4g151800 Pisum sativum HOM05D006418 ORTHO05D008063 5.2e-97 358.6 247 67.2
Atru.chr5.403 Acer truncatum HOM05D006418 ORTHO05D008063 1.7e-95 353.6 277 61.4
Lsat_1_v5_gn_7_8501 Lactuca sativa HOM05D006418 ORTHO05D008063 2.8e-95 352.8 260 65.4
Sed0024588 Sechium edule HOM05D006418 ORTHO05D008063 2.4e-94 349.7 238 68.9
AUR62004291 Chenopodium quinoa HOM05D006418 ORTHO05D008063 3.1e-94 349.4 248 65.3
SGA_v2.0_scaffold95G28870 Striga asiatica HOM05D006418 ORTHO05D008063 4.1e-94 349.0 304 58.2
Prupe.2G154600 Prunus persica HOM05D006418 ORTHO05D008063 5.4e-94 348.6 238 68.9
Oeu024416.1 Olea europaea HOM05D006418 ORTHO05D008063 1.8e-89 333.6 258 63.2
QL08p050652 Quercus lobata HOM05D006418 ORTHO05D008063 3.3e-83 312.8 224 66.1
Cpa.g.sc18.197 Carica papaya HOM05D006418 ORTHO05D008063 1.5e-80 303.9 225 64.0
unitig_22.g5367 Utricularia gibba HOM05D006418 ORTHO05D008063 8.3e-79 298.1 198 70.2
Cc02_g37660 Coffea canephora HOM05D006418 ORTHO05D008063 2.5e-75 286.6 202 67.8
MCO14G366 Micromonas commoda HOM05D006418 ORTHO05D008063 9.9e-72 274.6 313 48.6
Gohir.A11G085000 Gossypium hirsutum HOM05D006418 ORTHO05D008063 2.4e-70 270.0 179 67.0
Cre12.g542202 Chlamydomonas reinhardtii HOM05D006418 ORTHO05D008063 4.1e-70 269.2 307 47.9
MBI12_g25033_MAGBIO Magnolia biondii HOM05D006418 ORTHO05D008063 9.2e-70 268.1 221 58.4
SEGI_14549 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 4.7e-66 255.8 172 69.2
Hma1.2p1_0033F.1_g020640 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 2.6e-64 250.0 240 52.9
PRCOL_00000121 Prasinoderma coloniale HOM05D006418 ORTHO05D008063 8.4e-63 245.0 309 45.0
arahy.Tifrunner.gnm1.ann1.N7AMXP Arachis hypogaea HOM05D006418 ORTHO05D008063 7.3e-51 205.3 139 69.8
Sc26g0001060 Simmondsia chinensis HOM05D001335 ORTHO05D001184 6.4e-47 192.2 186 54.3
Haze_15226 Corylus avellana HOM05D006418 ORTHO05D008063 8.4e-47 191.8 133 66.9
FAN10G0301 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.3e-42 177.9 173 50.3
Pp3c1_6480 Physcomitrium patens HOM05D006418 ORTHO05D008063 1.3e-42 177.9 277 37.9
Ca_28970_v3 Cicer arietinum L. HOM05D006418 ORTHO05D008063 3.3e-35 153.3 278 35.6
Glyma.07G078900 Glycine max HOM05D006418 ORTHO05D008063 8.2e-34 148.7 148 54.1
Sc26g0001070 Simmondsia chinensis HOM05D006418 ORTHO05D008063 2.0e-32 144.1 145 53.1
Gohir.A11G084900 Gossypium hirsutum HOM05D006418 ORTHO05D008063 3.8e-31 139.8 104 61.5
Cfa024407 Carpinus fangiana HOM05D006418 ORTHO05D008063 7.1e-30 135.6 287 32.8
Sabra14G0055300 Salix brachista HOM05D006418 ORTHO05D008063 5.1e-28 129.4 258 31.8
ATR0620G127 Amborella trichopoda HOM05D006418 ORTHO05D008063 1.5e-19 101.3 158 36.7
unitig_22.g5366 Utricularia gibba HOM05D003447 ORTHO05D003967 3.8e-15 86.7 57 64.9
SEGI_36912 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 2.3e-12 77.4 62 58.1
CiPaw.01G052800 Carya illinoinensis HOM05D006418 ORTHO05D008063 8.8e-12 75.5 50 62.0
Cc00_g22860 Coffea canephora HOM05D006418 ORTHO05D008063 1.8e-09 67.8 57 59.6
MBI16_g15528_MAGBIO Magnolia biondii HOM05D006418 ORTHO05D008063 2.9e-07 60.5 42 64.3
SEGI_18314 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 1.4e-06 58.2 45 60.0


User provided reference genes

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