Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 1.0e-128 463.4 228 100.0
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 8.4e-107 390.6 227 81.5
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 4.2e-106 388.3 227 80.2
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 9.3e-106 387.1 227 79.7
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 1.6e-105 386.3 227 80.2
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 2.7e-105 385.6 226 80.5
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 2.7e-105 385.6 226 80.5
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 3.5e-105 385.2 226 79.6
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 3.5e-105 385.2 226 79.6
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 3.5e-105 385.2 227 78.9
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 4.6e-105 384.8 227 79.7
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 4.6e-105 384.8 227 79.7
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 4.6e-105 384.8 227 79.7
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 6.0e-105 384.4 227 80.2
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 7.8e-105 384.0 227 79.3
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 1.3e-104 383.3 227 79.3
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.3e-104 383.3 226 79.2
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 1.7e-104 382.9 227 79.3
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 3.9e-104 381.7 227 79.3
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 5.1e-104 381.3 227 78.9
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 5.1e-104 381.3 227 78.9
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 6.6e-104 380.9 227 78.9
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 6.6e-104 380.9 228 78.5
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 6.6e-104 380.9 227 78.9
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 8.7e-104 380.6 227 78.9
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.1e-103 380.2 227 78.4
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 1.1e-103 380.2 227 78.4
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 1.1e-103 380.2 227 78.4
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 1.5e-103 379.8 227 78.9
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 1.9e-103 379.4 227 78.9
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 1.9e-103 379.4 227 78.4
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 2.5e-103 379.0 227 78.0
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 2.5e-103 379.0 227 78.9
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 2.5e-103 379.0 227 78.0
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 3.3e-103 378.6 227 79.7
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 4.3e-103 378.3 227 78.9
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 7.3e-103 377.5 227 78.4
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 7.3e-103 377.5 227 78.0
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 7.3e-103 377.5 227 78.9
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.3e-102 376.7 227 78.0
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 1.3e-102 376.7 227 78.9
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.6e-102 376.3 227 77.5
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.6e-102 376.3 227 77.5
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 3.6e-102 375.2 227 77.1
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 3.6e-102 375.2 227 76.7
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 4.8e-102 374.8 227 76.7
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 8.1e-102 374.0 227 77.1
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 8.1e-102 374.0 227 77.5
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 8.1e-102 374.0 227 77.5
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 1.1e-101 373.6 227 77.1
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 1.1e-101 373.6 227 78.0
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 1.1e-101 373.6 227 76.7
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 1.1e-101 373.6 227 77.1
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 1.1e-101 373.6 227 77.1
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 1.4e-101 373.2 227 76.2
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 1.4e-101 373.2 227 77.1
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 1.4e-101 373.2 227 77.5
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 1.8e-101 372.9 227 75.8
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 3.1e-101 372.1 227 77.5
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 3.1e-101 372.1 227 77.1
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 5.3e-101 371.3 227 77.1
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 6.9e-101 370.9 227 76.7
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 2.6e-100 369.0 227 75.8
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 3.4e-100 368.6 227 76.7
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 3.4e-100 368.6 227 75.8
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 3.4e-100 368.6 227 76.7
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 5.8e-100 367.9 227 76.7
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 5.8e-100 367.9 227 74.9
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 7.6e-100 367.5 226 75.7
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 1.3e-99 366.7 220 78.6
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 2.2e-99 365.9 227 74.9
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 2.9e-99 365.5 227 74.9
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 3.8e-99 365.2 227 75.8
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 6.4e-99 364.4 227 76.2
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 6.4e-99 364.4 227 76.2
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 6.4e-99 364.4 227 76.2
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 6.4e-99 364.4 227 76.2
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 6.4e-99 364.4 227 76.2
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 6.4e-99 364.4 227 76.2
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 6.4e-99 364.4 229 76.0
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 1.4e-98 363.2 227 76.2
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 1.4e-98 363.2 227 75.8
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 1.4e-98 363.2 229 75.5
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 4.2e-98 361.7 227 75.3
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 5.4e-98 361.3 226 75.2
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 7.1e-98 360.9 227 76.2
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 9.3e-98 360.5 227 74.4
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 9.3e-98 360.5 227 74.4
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 1.2e-97 360.1 227 74.9
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 1.6e-97 359.8 227 73.6
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 2.7e-97 359.0 227 73.6
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 2.7e-97 359.0 227 74.0
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 4.6e-97 358.2 236 73.3
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 4.6e-97 358.2 227 74.0
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 1.8e-96 356.3 227 73.1
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 1.8e-96 356.3 227 74.0
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 3.0e-96 355.5 227 73.1
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 3.9e-96 355.1 211 80.6
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 5.1e-96 354.8 227 73.6
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 5.1e-96 354.8 228 72.8
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 1.1e-95 353.6 227 72.7
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 1.6e-94 349.7 254 68.1
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 2.6e-92 342.4 227 72.7
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 6.4e-91 337.8 202 79.2
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 3.2e-90 335.5 227 68.3
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 7.9e-89 330.9 201 77.1
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 2.3e-88 329.3 202 76.7
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 3.0e-88 328.9 192 80.7
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 5.1e-88 328.2 226 68.1
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 6.7e-88 327.8 201 77.1
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 2.1e-86 322.8 198 76.3
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 3.7e-86 322.0 191 79.6
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 1.4e-85 320.1 190 78.4
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 1.8e-85 319.7 190 79.5
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 6.9e-85 317.8 191 78.5
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 2.0e-84 316.2 187 79.7
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 2.0e-84 316.2 231 67.1
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.7e-83 313.2 234 67.1
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 5.5e-82 308.1 185 80.0
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 2.1e-81 306.2 227 64.8
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 1.3e-78 297.0 227 64.8
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 2.6e-76 289.3 184 74.5
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 1.2e-73 280.4 226 61.5
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 1.8e-72 276.6 161 79.5
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 1.3e-70 270.4 164 78.7
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.3e-67 260.4 159 76.1
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 1.6e-65 253.4 355 41.4
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.3e-59 233.8 159 66.0
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 3.9e-56 222.2 147 72.1
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.9e-50 203.4 131 68.7
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 7.2e-50 201.4 120 75.8
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.7e-28 129.8 140 48.6
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.7e-22 109.4 66 75.8
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 1.6e-20 104.0 62 71.0
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 6.8e-16 88.6 149 38.3
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 1.4e-13 80.9 39 84.6
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 2.1e-12 77.0 41 73.2
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 2.7e-12 76.6 52 61.5
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 3.5e-12 76.3 124 41.9
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 1.2e-09 67.8 64 51.6
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 8.4e-06 55.1 26 88.5


User provided reference genes

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