Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 2.9e-182 641.7 315 100.0
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 9.2e-88 327.8 320 52.8
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 8.9e-83 311.2 303 51.2
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 3.8e-81 305.8 315 50.5
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 3.8e-81 305.8 298 53.7
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 4.1e-80 302.4 303 49.5
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 7.1e-80 301.6 315 49.8
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 9.2e-80 301.2 315 49.2
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 1.2e-79 300.8 315 47.3
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 1.6e-79 300.4 315 49.2
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 3.5e-79 299.3 321 49.5
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 3.5e-79 299.3 311 49.2
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 6.0e-79 298.5 309 49.5
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 6.0e-79 298.5 314 48.4
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 1.0e-78 297.7 315 49.8
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 1.7e-78 297.0 303 49.2
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 3.9e-78 295.8 309 48.9
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 8.7e-78 294.7 296 49.3
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.1e-77 294.3 314 47.8
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 1.5e-77 293.9 316 50.3
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 2.5e-77 293.1 311 49.5
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 3.3e-77 292.7 314 49.0
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 4.3e-77 292.4 314 48.7
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 9.6e-77 291.2 315 47.3
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 1.2e-76 290.8 314 46.8
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.6e-76 290.4 311 49.2
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 2.1e-76 290.0 308 48.7
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 4.7e-76 288.9 305 48.5
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 6.2e-76 288.5 303 49.5
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 8.1e-76 288.1 301 47.2
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 1.4e-75 287.3 288 49.7
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 1.8e-75 287.0 314 48.4
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 1.8e-75 287.0 304 46.1
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 1.8e-75 287.0 315 47.9
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 2.4e-75 286.6 313 47.0
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 2.4e-75 286.6 315 48.6
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 2.4e-75 286.6 340 43.8
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 3.1e-75 286.2 310 47.7
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 9.0e-75 284.6 308 47.4
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 1.2e-74 284.3 310 47.4
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 2.0e-74 283.5 303 48.2
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 2.0e-74 283.5 314 46.2
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 3.4e-74 282.7 305 47.5
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 3.4e-74 282.7 308 45.8
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 4.4e-74 282.3 310 47.1
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 4.4e-74 282.3 301 48.5
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 1.7e-73 280.4 309 48.5
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 1.7e-73 280.4 315 47.6
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 2.2e-73 280.0 314 48.1
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 2.9e-73 279.6 308 45.1
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 3.8e-73 279.3 311 46.6
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 4.9e-73 278.9 312 46.8
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 6.4e-73 278.5 308 48.1
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 6.4e-73 278.5 297 47.1
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 8.4e-73 278.1 297 47.1
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 8.4e-73 278.1 303 47.2
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 1.1e-72 277.7 346 45.1
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 1.4e-72 277.3 311 46.0
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 1.9e-72 276.9 308 46.4
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 1.9e-72 276.9 299 46.8
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 1.9e-72 276.9 311 46.6
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 1.9e-72 276.9 282 48.9
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 2.4e-72 276.6 311 45.3
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 3.2e-72 276.2 310 45.8
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 1.2e-71 274.2 307 45.9
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 1.2e-71 274.2 311 45.7
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 2.1e-71 273.5 309 46.3
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 2.7e-71 273.1 329 45.0
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 2.7e-71 273.1 316 45.9
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 2.7e-71 273.1 296 48.3
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 3.5e-71 272.7 311 46.0
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 3.5e-71 272.7 309 46.6
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.0e-70 271.2 319 45.8
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 1.3e-70 270.8 311 46.3
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 1.7e-70 270.4 311 45.3
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 2.3e-70 270.0 311 45.7
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 3.0e-70 269.6 306 45.4
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 3.9e-70 269.2 310 44.8
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 1.1e-69 267.7 316 45.9
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 1.5e-69 267.3 310 44.8
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 2.5e-69 266.5 310 43.9
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 3.3e-69 266.2 299 47.8
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 1.3e-68 264.2 307 46.6
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 1.8e-67 260.4 276 48.6
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 6.9e-67 258.5 370 40.5
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 1.5e-66 257.3 295 46.4
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 1.3e-65 254.2 286 45.5
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 1.7e-65 253.8 310 43.5
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 6.4e-65 251.9 289 47.1
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 9.3e-64 248.1 336 41.4
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 1.6e-63 247.3 278 46.4
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 4.6e-63 245.7 310 42.6
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.1e-61 241.1 291 46.4
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 3.8e-57 226.1 309 42.1
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 8.4e-57 224.9 276 45.7
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.1e-56 224.6 276 45.7
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.1e-56 224.6 303 40.6
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 1.2e-55 221.1 287 42.5
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 4.6e-55 219.2 219 48.9
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 6.0e-55 218.8 297 41.1
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 1.3e-54 217.6 297 40.7
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.1e-53 214.5 260 44.6
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 1.5e-53 214.2 228 47.8
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 7.4e-53 211.8 267 41.6
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 6.9e-51 205.3 337 38.0
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 7.6e-50 201.8 235 45.1
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 3.2e-48 196.4 204 51.5
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 7.1e-48 195.3 276 40.2
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 1.8e-46 190.7 277 39.7
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 7.4e-45 185.3 193 51.8
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 2.8e-44 183.3 198 50.0
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 2.4e-43 180.3 207 47.3
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 5.3e-43 179.1 220 45.5
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 5.0e-41 172.6 205 42.4
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 7.2e-40 168.7 204 42.6
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.0e-38 164.9 166 51.8
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 4.1e-35 152.9 148 48.6
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 1.4e-30 137.9 170 41.8
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 8.2e-28 128.6 237 37.6
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 1.4e-27 127.9 296 31.1
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 3.1e-27 126.7 151 47.0
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 5.3e-27 125.9 291 29.9
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 2.6e-26 123.6 147 44.9
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 6.5e-25 119.0 85 60.0
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 3.9e-22 109.8 131 45.0
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 4.8e-20 102.8 117 44.4
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 1.4e-19 101.3 279 28.7
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 1.4e-19 101.3 119 46.2
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 2.9e-17 93.6 122 41.8
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 1.2e-13 81.6 83 45.8
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.2e-13 81.6 85 52.9
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 2.1e-07 60.8 47 48.9
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 2.3e-06 57.4 77 44.2


User provided reference genes

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