Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 0.0e+00 1147.1 573 100.0
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 2.1e-122 443.7 561 45.5
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 8.8e-121 438.3 585 43.8
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 9.7e-120 434.9 548 44.0
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 8.2e-119 431.8 532 45.7
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 2.4e-118 430.3 524 46.4
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 3.1e-118 429.9 546 44.3
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 1.2e-117 427.9 527 44.4
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 3.5e-117 426.4 523 45.9
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 7.7e-117 425.2 532 45.7
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 1.3e-116 424.5 554 44.4
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 1.3e-116 424.5 527 45.4
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 2.2e-116 423.7 527 44.0
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 2.9e-116 423.3 534 44.2
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 6.5e-116 422.2 534 45.3
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 6.5e-116 422.2 533 43.9
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 8.5e-116 421.8 527 46.5
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 1.1e-115 421.4 522 45.6
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 1.9e-115 420.6 526 44.7
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 1.9e-115 420.6 531 44.4
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 3.2e-115 419.9 528 45.6
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 3.2e-115 419.9 519 44.1
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 4.2e-115 419.5 525 44.4
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 4.2e-115 419.5 528 45.3
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 9.4e-115 418.3 525 45.7
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 9.4e-115 418.3 519 44.7
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 1.6e-114 417.5 529 45.2
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 2.7e-114 416.8 534 45.1
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 3.6e-114 416.4 525 44.4
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 4.7e-114 416.0 528 45.3
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 4.7e-114 416.0 537 43.8
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 1.0e-113 414.8 516 45.2
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 1.4e-113 414.5 528 44.3
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.4e-113 414.5 529 44.6
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 1.8e-113 414.1 534 43.3
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.0e-113 413.3 519 43.4
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 4.0e-113 412.9 520 45.2
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 6.8e-113 412.1 524 44.7
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 6.8e-113 412.1 525 45.1
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 6.8e-113 412.1 524 45.2
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 6.8e-113 412.1 528 45.3
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 8.8e-113 411.8 522 43.9
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 1.2e-112 411.4 524 44.3
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 1.2e-112 411.4 527 43.8
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 1.5e-112 411.0 523 44.9
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.5e-112 411.0 532 44.0
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 2.0e-112 410.6 534 44.0
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 2.0e-112 410.6 527 43.8
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 2.0e-112 410.6 532 44.2
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 2.0e-112 410.6 521 44.5
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 3.4e-112 409.8 537 43.4
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 4.4e-112 409.5 537 43.2
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 4.4e-112 409.5 522 45.0
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 4.4e-112 409.5 518 42.9
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 5.7e-112 409.1 528 44.1
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 5.7e-112 409.1 524 43.1
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 9.8e-112 408.3 519 43.2
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 9.8e-112 408.3 533 44.1
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 1.3e-111 407.9 528 44.5
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 1.7e-111 407.5 525 44.0
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 1.7e-111 407.5 532 43.6
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 2.8e-111 406.8 529 43.1
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 3.7e-111 406.4 537 43.2
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 3.7e-111 406.4 537 43.2
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 8.3e-111 405.2 517 45.5
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 1.1e-110 404.8 529 43.3
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 2.4e-110 403.7 515 44.3
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 2.4e-110 403.7 528 44.5
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 4.1e-110 402.9 522 44.3
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 5.4e-110 402.5 529 42.9
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 5.4e-110 402.5 582 41.9
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 9.1e-110 401.7 504 44.6
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 1.2e-109 401.4 528 43.8
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 1.6e-109 401.0 544 43.2
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 2.7e-109 400.2 519 43.4
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 3.5e-109 399.8 519 43.7
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 7.7e-109 398.7 528 43.6
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 1.3e-108 397.9 527 43.3
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.3e-108 397.9 524 43.5
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 1.3e-108 397.9 528 43.2
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 5.0e-108 396.0 519 43.4
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 6.6e-108 395.6 530 44.0
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 2.5e-107 393.7 528 42.6
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 3.6e-106 389.8 525 43.0
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 6.1e-106 389.0 502 43.4
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 2.3e-105 387.1 523 42.6
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 2.3e-105 387.1 553 41.6
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 3.0e-105 386.7 477 45.9
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 3.0e-105 386.7 523 42.6
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 3.0e-105 386.7 527 43.3
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 5.2e-105 386.0 543 42.5
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 8.9e-105 385.2 556 41.0
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 1.1e-102 378.3 544 40.6
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 2.0e-101 374.0 496 43.8
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.9e-99 367.5 481 43.7
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 4.7e-98 362.8 523 41.7
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 8.3e-95 352.1 489 42.3
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 2.4e-94 350.5 659 37.3
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 4.7e-90 336.3 550 37.3
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 5.2e-89 332.8 574 38.5
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 2.6e-88 330.5 528 37.9
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 1.1e-83 315.1 419 42.2
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 5.6e-83 312.8 443 41.8
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 1.4e-81 308.1 403 41.9
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 1.2e-77 295.0 493 39.4
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.5e-75 287.3 413 40.2
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 3.2e-62 243.8 208 58.7
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 7.1e-62 242.7 525 34.3
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 3.0e-60 237.3 221 54.3
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.1e-57 228.8 207 55.6
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 7.6e-56 222.6 702 27.6
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 2.2e-55 221.1 207 53.6
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 8.4e-55 219.2 512 33.2
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 2.1e-53 214.5 353 39.4
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 6.2e-50 203.0 162 61.1
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 6.0e-45 186.4 169 55.6
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.4e-38 165.2 161 50.9
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 7.9e-29 132.9 117 54.7
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 8.8e-28 129.4 236 33.5
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 3.7e-26 124.0 124 51.6
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 1.5e-24 118.6 148 41.9
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.3e-23 115.5 316 31.3
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.1e-21 108.2 108 52.8
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 4.4e-19 100.5 137 44.5
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 5.7e-19 100.1 109 49.5
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 1.7e-18 98.6 93 51.6
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 8.0e-13 79.7 83 50.6
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.0e-12 79.3 94 43.6
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 5.2e-12 77.0 139 32.4
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.7e-10 72.0 99 34.3
PRCOL_00000097 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 7.7e-08 63.2 137 29.9
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 6.5e-07 60.1 49 59.2
MCO03G398 Micromonas commoda HOM05D018879 ORTHO05D018932 3.2e-06 57.8 417 20.9
MCO02G055 Micromonas commoda HOM05D018879 ORTHO05D018932 9.4e-06 56.2 126 28.6


User provided reference genes

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