Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0134s0003 Marchantia polymorpha HOM05D007415 ORTHO05D009324 3.0e-140 501.9 262 100.0
Pp3c1_28310 Physcomitrium patens HOM05D007415 ORTHO05D009324 8.9e-36 154.8 198 42.4
AagrBONN_evm.TU.Sc2ySwM_362.2902 Anthoceros agrestis HOM05D007415 ORTHO05D009324 2.4e-33 146.7 154 51.9
CDE04G2941 Ceratophyllum demersum HOM05D007415 ORTHO05D009324 1.5e-30 137.5 246 36.2
Manes.12G058800 Manihot esculenta HOM05D007415 ORTHO05D009324 1.2e-29 134.4 246 37.4
Prupe.8G267300 Prunus persica HOM05D007415 ORTHO05D009324 3.1e-28 129.8 246 34.1
Os05g0417300 Oryza sativa ssp. japonica HOM05D007415 ORTHO05D009324 6.8e-28 128.6 259 32.4
PSO675G4429 Papaver somniferum HOM05D007415 ORTHO05D009324 8.9e-28 128.3 266 35.0
MBI10_g35389_MAGBIO Magnolia biondii HOM05D007415 ORTHO05D009324 1.5e-27 127.5 245 35.1
MD11G1318200 Malus domestica HOM05D007415 ORTHO05D009324 4.4e-27 125.9 264 32.2
Thecc.01G204000 Theobroma cacao HOM05D007415 ORTHO05D009324 4.4e-27 125.9 252 32.9
Atru.chr6.3473 Acer truncatum HOM05D007415 ORTHO05D009324 5.8e-27 125.6 246 36.2
ATR0743G053 Amborella trichopoda HOM05D007415 ORTHO05D009324 5.8e-27 125.6 237 31.6
CsaV3_1G007790 Cucumis sativus L. HOM05D007415 ORTHO05D009324 7.6e-27 125.2 247 35.6
MD03G1298900 Malus domestica HOM05D007415 ORTHO05D009324 7.6e-27 125.2 268 31.7
Sopen09g012680 Solanum pennellii HOM05D007415 ORTHO05D009324 1.7e-26 124.0 243 34.2
Solyc09g018950.3 Solanum lycopersicum HOM05D007415 ORTHO05D009324 2.2e-26 123.6 243 33.7
Sc05g0001580 Simmondsia chinensis HOM05D007415 ORTHO05D009324 6.4e-26 122.1 246 33.3
Potri.014G197700 Populus trichocarpa HOM05D007415 ORTHO05D009324 8.3e-26 121.7 244 34.0
PGR044G2664 Punica granatum HOM05D007415 ORTHO05D009324 1.1e-25 121.3 243 32.5
Eucgr.K02344 Eucalyptus grandis HOM05D007415 ORTHO05D009324 1.9e-25 120.6 248 33.1
SMO356G0522 Selaginella moellendorffii HOM05D007415 ORTHO05D009324 3.2e-25 119.8 242 32.6
CANSAT11G1932 Cannabis sativa HOM05D007415 ORTHO05D009324 4.1e-25 119.4 249 34.1
MELO3C002194.2 Cucumis melo HOM05D007415 ORTHO05D009324 4.1e-25 119.4 248 35.1
ClCG01G014510 Citrullus lanatus HOM05D007415 ORTHO05D009324 5.4e-25 119.0 261 34.5
Lsat_1_v5_gn_9_15740 Lactuca sativa HOM05D007415 ORTHO05D009324 1.2e-24 117.9 244 32.0
Ciclev10016323m.g Citrus clementina HOM05D007415 ORTHO05D009324 1.6e-24 117.5 259 33.6
Sed0017664 Sechium edule HOM05D007415 ORTHO05D009324 1.6e-24 117.5 246 34.1
CSS0038002 Camellia sinensis var. sinensis HOM05D007415 ORTHO05D009324 2.1e-24 117.1 244 34.8
Cfa006296 Carpinus fangiana HOM05D007415 ORTHO05D009324 2.1e-24 117.1 247 33.2
Oeu058216.1 Olea europaea HOM05D007415 ORTHO05D009324 2.1e-24 117.1 245 33.5
Gohir.D07G201100 Gossypium hirsutum HOM05D007415 ORTHO05D009324 3.5e-24 116.3 246 31.7
Gorai.001G225800 Gossypium raimondii HOM05D007415 ORTHO05D009324 3.5e-24 116.3 246 31.7
COL.COLO4_19724 Corchorus olitorius HOM05D007415 ORTHO05D009324 4.6e-24 115.9 243 31.7
Nitab4.5_0011643g0030 Nicotiana tabacum HOM05D007415 ORTHO05D009324 4.6e-24 115.9 243 32.1
Aqoxy4G00006 Aquilegia oxysepala HOM05D007415 ORTHO05D009324 7.8e-24 115.2 248 28.6
Migut.D00758 Erythranthe guttata HOM05D007415 ORTHO05D009324 7.8e-24 115.2 244 32.0
CAN.G15.19 Capsicum annuum HOM05D007415 ORTHO05D009324 1.0e-23 114.8 258 31.0
CiPaw.07G119000 Carya illinoinensis HOM05D007415 ORTHO05D009324 1.3e-23 114.4 248 33.1
Lj1g0001063 Lotus japonicus HOM05D007415 ORTHO05D009324 1.7e-23 114.0 258 32.9
Nn4g24568 Nelumbo nucifera HOM05D007415 ORTHO05D009324 2.3e-23 113.6 247 31.2
Carub.0007s3006 Capsella rubella HOM05D007415 ORTHO05D009324 3.9e-23 112.8 242 31.0
BcaC07g37433 Brassica carinata HOM05D007415 ORTHO05D009324 5.1e-23 112.5 245 33.5
C08p09070 Brassica napus HOM05D007415 ORTHO05D009324 5.1e-23 112.5 245 33.5
BolC8t47754H Brassica oleracea HOM05D007415 ORTHO05D009324 5.1e-23 112.5 245 33.5
Actinidia23816 Actinidia chinensis HOM05D007415 ORTHO05D009324 6.6e-23 112.1 247 32.8
GSVIVG01038257001 Vitis vinifera HOM05D007415 ORTHO05D009324 8.6e-23 111.7 259 31.3
AL9U11890 Arabidopsis lyrata HOM05D007415 ORTHO05D009324 1.1e-22 111.3 245 31.4
Dinv02951 Davidia involucrata HOM05D007415 ORTHO05D009324 1.1e-22 111.3 246 33.7
HanXRQChr08g0230811 Helianthus annuus HOM05D007415 ORTHO05D009324 1.9e-22 110.5 245 32.2
BraA08t32753Z Brassica rapa HOM05D007415 ORTHO05D009324 4.3e-22 109.4 242 33.1
TAR636G2599 Trochodendron aralioides HOM05D007415 ORTHO05D009324 4.3e-22 109.4 244 32.0
vmacro14670 Vaccinium macrocarpon HOM05D007415 ORTHO05D009324 5.6e-22 109.0 267 30.7
arahy.Tifrunner.gnm1.ann1.HL0ERI Arachis hypogaea HOM05D007415 ORTHO05D009324 9.6e-22 108.2 250 31.6
arahy.Tifrunner.gnm1.ann1.YL0UD8 Arachis hypogaea HOM05D007415 ORTHO05D009324 1.2e-21 107.8 250 31.2
CSS0018954 Camellia sinensis var. sinensis HOM05D007415 ORTHO05D009324 1.2e-21 107.8 241 33.2
BcaB04g17744 Brassica carinata HOM05D007415 ORTHO05D009324 1.6e-21 107.5 245 32.2
Thhalv10026014m.g Eutrema salsugineum HOM05D007415 ORTHO05D009324 1.6e-21 107.5 244 29.9
CARHR218100 Cardamine hirsuta HOM05D007415 ORTHO05D009324 2.8e-21 106.7 247 30.4
Psat5g001880 Pisum sativum HOM05D007415 ORTHO05D009324 4.7e-21 105.9 244 30.7
VMungo1309G2266 Vigna mungo HOM05D007415 ORTHO05D009324 4.7e-21 105.9 245 31.8
AT4G12760 Arabidopsis thaliana HOM05D007415 ORTHO05D009324 6.2e-21 105.5 243 31.7
MSTRG.21289 Avicennia marina HOM05D007415 ORTHO05D009324 6.2e-21 105.5 246 31.7
Rhsim01G0246200 Rhododendron simsii HOM05D007415 ORTHO05D009324 8.1e-21 105.1 265 31.3
Aa31sc565G30 Aethionema arabicum HOM05D007415 ORTHO05D009324 1.1e-20 104.8 245 30.2
SHI10204 Sapria himalayana HOM05D007415 ORTHO05D009324 1.1e-20 104.8 245 31.0
Glyma.04G002800 Glycine max HOM05D007415 ORTHO05D009324 1.4e-20 104.4 244 30.7
Sp7g09150 Schrenkiella parvula HOM05D007415 ORTHO05D009324 5.2e-20 102.4 242 30.2
THA.LOC104808823 Tarenaya hassleriana HOM05D007415 ORTHO05D009324 1.2e-19 101.3 247 30.4
Medtr3g118090 Medicago truncatula HOM05D007415 ORTHO05D009324 1.5e-19 100.9 241 29.5
EL10Ac5g10567 Beta vulgaris HOM05D007415 ORTHO05D009324 2.6e-19 100.1 207 31.4
Cc01_g15740 Coffea canephora HOM05D007415 ORTHO05D009324 2.6e-19 100.1 248 31.5
Peaxi162Scf00424g00066 Petunia axillaris HOM05D007415 ORTHO05D009324 2.6e-19 100.1 214 30.4
PSO732G0601 Papaver somniferum HOM05D007415 ORTHO05D009324 7.6e-19 98.6 258 27.1
unitig_61.g26009 Utricularia gibba HOM05D007415 ORTHO05D009324 9.9e-19 98.2 246 30.5
Hund02818 Selenicereus undatus HOM05D007415 ORTHO05D009324 1.3e-18 97.8 272 29.0
Nitab4.5_0010771g0010 Nicotiana tabacum HOM05D007415 ORTHO05D009324 2.9e-18 96.7 242 29.3
ECA247G1801 Erigeron canadensis HOM05D007415 ORTHO05D009324 6.4e-18 95.5 239 28.0
Lalb_Chr11g0061191 Lupinus albus HOM05D007415 ORTHO05D009324 8.4e-18 95.1 149 37.6
Gohir.A07G194700 Gossypium hirsutum HOM05D007415 ORTHO05D009324 1.1e-17 94.7 214 31.8
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 4.2e-17 92.8 244 27.0
TWI36G0361 Tripterygium wilfordii HOM05D007415 ORTHO05D009324 7.1e-17 92.0 245 28.6
A08p07370 Brassica napus HOM05D007415 ORTHO05D009324 1.2e-16 91.3 253 28.5
AUR62008047 Chenopodium quinoa HOM05D007415 ORTHO05D009324 1.2e-16 91.3 253 29.2
SalBow6G5534 Salvia bowleyana HOM05D007415 ORTHO05D009324 2.7e-16 90.1 301 26.6
QL03p044140 Quercus lobata HOM05D007415 ORTHO05D009324 4.6e-16 89.4 211 31.8
Duzib133G1418 Durio zibethinus HOM05D007415 ORTHO05D009324 6.0e-16 89.0 205 31.7
PGSC0003DMG400020290 Solanum tuberosum HOM05D007415 ORTHO05D009324 1.7e-15 87.4 143 37.1
Cpa.g.sc8.12 Carica papaya HOM05D007415 ORTHO05D009324 3.9e-15 86.3 197 32.5
AUR62028622 Chenopodium quinoa HOM05D007415 ORTHO05D009324 5.1e-15 85.9 253 28.1
CBR_g39524 Chara braunii HOM05D000601 ORTHO05D000407 8.7e-15 85.1 98 41.8
Phvul.009G118400 Phaseolus vulgaris HOM05D007415 ORTHO05D009324 4.3e-14 82.8 242 28.9
Duzib138G0016 Durio zibethinus HOM05D007415 ORTHO05D009324 4.8e-13 79.3 110 40.9
Sabra14G0132700 Salix brachista HOM05D007415 ORTHO05D009324 8.1e-13 78.6 331 26.0
HPP92_001921 Vanilla planifolia HOM05D007415 ORTHO05D009324 8.1e-13 78.6 168 36.3
MCO10G262 Micromonas commoda HOM05D007415 ORTHO05D009324 8.4e-10 68.6 314 23.6
TPR.G38565 Trifolium pratense HOM05D007415 ORTHO05D009324 9.6e-06 55.1 55 45.5


User provided reference genes

Program Settings