Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 1.6e-121 439.5 232 100.0
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 1.6e-81 306.6 227 67.8
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 2.1e-81 306.2 226 68.1
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 4.7e-81 305.1 214 72.0
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.8e-80 303.1 224 68.3
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 7.5e-79 297.7 214 69.6
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 7.5e-79 297.7 227 67.8
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 9.8e-79 297.4 214 69.2
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 1.3e-78 297.0 227 68.3
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 1.3e-78 297.0 214 72.9
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 2.9e-78 295.8 214 71.5
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 2.9e-78 295.8 214 70.6
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 2.9e-78 295.8 230 65.7
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 2.9e-78 295.8 227 68.3
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 3.7e-78 295.4 227 67.4
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 3.7e-78 295.4 228 66.7
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 4.9e-78 295.0 226 66.4
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 6.4e-78 294.7 214 72.0
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 8.3e-78 294.3 227 66.5
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 8.3e-78 294.3 227 66.5
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 8.3e-78 294.3 227 66.5
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 8.3e-78 294.3 227 67.8
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 8.3e-78 294.3 227 67.8
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 1.1e-77 293.9 227 66.5
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 1.1e-77 293.9 214 71.5
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.4e-77 293.5 226 66.8
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 1.4e-77 293.5 214 69.2
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.4e-77 293.5 227 68.3
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 1.9e-77 293.1 214 70.6
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 1.9e-77 293.1 214 69.6
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 2.4e-77 292.7 214 68.7
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 2.4e-77 292.7 214 68.7
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 2.4e-77 292.7 214 70.6
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 2.4e-77 292.7 227 67.4
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 3.2e-77 292.4 214 71.0
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 3.2e-77 292.4 214 70.1
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 3.2e-77 292.4 214 68.2
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.2e-77 292.4 214 69.6
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 3.2e-77 292.4 227 67.0
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 3.2e-77 292.4 213 69.0
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 4.1e-77 292.0 214 69.6
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 4.1e-77 292.0 228 65.8
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 5.4e-77 291.6 223 69.1
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 5.4e-77 291.6 226 66.8
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 7.0e-77 291.2 215 69.3
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 7.0e-77 291.2 214 69.2
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 9.2e-77 290.8 227 65.2
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 1.2e-76 290.4 227 66.5
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 1.2e-76 290.4 214 70.6
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 1.2e-76 290.4 214 68.2
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 1.6e-76 290.0 214 68.7
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.6e-76 290.0 214 70.1
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 1.6e-76 290.0 214 69.6
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.6e-76 290.0 214 68.7
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.6e-76 290.0 225 66.2
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 2.0e-76 289.7 228 68.0
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.7e-76 289.3 214 67.8
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 2.7e-76 289.3 214 67.8
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 2.7e-76 289.3 214 69.2
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 2.7e-76 289.3 227 65.6
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 2.7e-76 289.3 214 69.2
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 2.7e-76 289.3 226 66.8
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.7e-76 289.3 214 67.3
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 2.7e-76 289.3 214 69.2
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 3.5e-76 288.9 214 67.8
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 3.5e-76 288.9 214 68.7
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 4.6e-76 288.5 214 67.8
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 4.6e-76 288.5 214 67.3
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 6.0e-76 288.1 227 66.1
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 7.8e-76 287.7 214 67.3
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 7.8e-76 287.7 215 68.8
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 7.8e-76 287.7 228 65.8
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.0e-75 287.3 214 69.2
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.7e-75 286.6 214 67.8
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 2.3e-75 286.2 214 67.3
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.3e-75 286.2 214 67.3
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 2.3e-75 286.2 226 66.4
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 2.3e-75 286.2 231 65.4
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 2.3e-75 286.2 214 68.7
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 2.3e-75 286.2 215 68.8
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 3.0e-75 285.8 214 68.2
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 3.0e-75 285.8 215 68.8
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 3.9e-75 285.4 211 68.7
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 3.9e-75 285.4 214 68.2
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 5.0e-75 285.0 193 74.1
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 5.0e-75 285.0 214 66.8
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 5.0e-75 285.0 216 69.0
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 6.6e-75 284.6 214 67.3
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 6.6e-75 284.6 214 67.8
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 1.1e-74 283.9 214 67.3
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 1.1e-74 283.9 232 65.1
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 1.9e-74 283.1 207 69.6
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 2.5e-74 282.7 215 67.9
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 3.3e-74 282.3 214 67.3
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 1.2e-73 280.4 206 69.4
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 2.8e-73 279.3 214 66.8
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 6.2e-73 278.1 206 68.4
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 6.2e-73 278.1 235 63.0
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 1.1e-72 277.3 214 69.2
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 1.1e-72 277.3 200 70.0
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 2.3e-72 276.2 226 65.5
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.3e-72 276.2 213 67.6
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.1e-72 275.8 205 68.3
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 4.0e-72 275.4 200 69.5
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 4.0e-72 275.4 199 69.8
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 1.5e-71 273.5 199 69.8
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 3.4e-71 272.3 200 67.5
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 4.4e-71 271.9 202 68.8
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 7.5e-71 271.2 212 67.0
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 9.9e-71 270.8 205 66.3
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 3.7e-70 268.9 200 68.5
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 4.9e-70 268.5 200 68.5
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 1.1e-69 267.3 252 58.3
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.9e-69 266.5 200 67.0
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 5.4e-69 265.0 200 67.5
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 1.0e-67 260.8 223 61.0
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 6.6e-67 258.1 202 68.3
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 1.5e-66 256.9 226 61.9
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 6.2e-65 251.5 182 69.8
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.5e-63 246.9 192 66.1
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 9.9e-63 244.2 178 70.8
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 1.3e-62 243.8 248 54.8
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 3.8e-62 242.3 177 68.9
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 3.2e-61 239.2 214 61.7
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 1.4e-56 223.8 168 67.3
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 2.0e-55 219.9 164 67.7
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 1.9e-53 213.4 215 54.0
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.9e-53 213.4 164 64.0
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 3.6e-49 199.1 193 56.0
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 6.2e-49 198.4 157 62.4
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 1.1e-48 197.6 214 54.7
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 1.4e-48 197.2 150 66.0
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 5.3e-48 195.3 199 55.3
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 5.8e-47 191.8 216 52.3
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 1.2e-44 184.1 150 65.3
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 2.7e-44 183.0 140 66.4
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.5e-39 167.2 188 50.5
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 3.2e-37 159.5 131 61.8
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 3.7e-33 146.0 103 66.0
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 5.1e-27 125.6 115 58.3
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 5.7e-26 122.1 105 63.8
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.1e-24 117.9 109 57.8
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 2.1e-20 103.6 92 57.6
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.1e-18 97.8 87 58.6
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.7e-17 94.0 64 73.4
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 2.2e-14 83.6 133 41.4
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.2e-13 79.7 49 77.6
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 6.1e-12 75.5 213 28.2
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.0e-11 74.7 57 68.4
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 1.2e-07 61.2 66 48.5
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 2.6e-07 60.1 68 47.1
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.6e-07 60.1 110 37.3
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.9e-06 56.6 59 52.5
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.8e-06 56.2 97 39.2
SMO117G0323 Selaginella moellendorffii HOM05D000088 ORTHO05D001030 5.0e-06 55.8 144 27.1
Pp3c15_16340 Physcomitrium patens HOM05D000088 ORTHO05D001217 6.5e-06 55.5 151 28.5
FAN21G0583 Fragaria x ananassa HOM05D000083 ORTHO05D020638 8.5e-06 55.1 158 29.7


User provided reference genes

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