Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 0.0e+00 2261.9 1136 100.0
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 0.0e+00 1151.3 1132 54.1
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1136.3 1172 52.9
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1135.2 1136 53.1
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1134.8 1159 52.6
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1127.1 1160 52.7
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1125.5 1215 51.0
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1122.1 1143 52.6
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1115.1 1146 51.7
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 0.0e+00 1110.5 1136 52.6
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1108.6 1149 51.4
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1103.6 1150 51.3
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1100.5 1157 50.8
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1097.4 1150 50.8
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1097.4 1147 51.9
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1092.8 1146 51.6
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 0.0e+00 1089.7 1026 56.1
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1089.3 1153 51.3
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1086.6 1142 51.1
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1085.9 1144 51.6
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1083.9 1163 50.5
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1083.2 1205 49.0
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1081.6 1164 50.3
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1078.5 1143 52.0
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1078.2 1132 51.0
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1076.6 1145 51.6
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1075.5 1149 51.3
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1075.5 1140 51.1
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 7.8e-312 1074.7 1152 50.7
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 3.9e-311 1071.6 1146 51.0
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 5.4e-311 1071.2 1146 51.4
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 7.0e-311 1070.8 1146 50.9
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 1.6e-310 1069.7 1146 51.0
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 2.2e-309 1065.8 1180 50.3
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 1.1e-308 1063.5 1138 50.4
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 7.2e-308 1060.8 1135 50.4
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 1.2e-307 1060.1 1146 50.3
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 2.3e-306 1055.8 1151 50.6
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 2.8e-304 1048.9 1094 51.7
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 2.8e-304 1048.9 1131 50.3
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 2.8e-304 1048.9 1143 50.1
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 4.1e-303 1045.0 1150 50.2
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 5.3e-303 1044.6 1136 50.4
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 1.6e-302 1043.1 1143 49.7
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 1.3e-301 1040.0 1207 48.3
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 1.7e-301 1039.6 1148 48.9
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 2.9e-301 1038.9 1147 49.7
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 3.8e-301 1038.5 1146 49.5
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 1.1e-300 1036.9 1129 49.6
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 3.2e-300 1035.4 1136 49.0
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 3.2e-300 1035.4 1156 48.6
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 4.2e-300 1035.0 1145 49.6
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 1.4e-298 1030.0 1153 49.4
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 2.6e-297 1025.8 1158 48.4
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 3.3e-297 1025.4 1143 48.4
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 5.7e-297 1024.6 1162 48.6
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 2.2e-296 1022.7 1160 48.4
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 2.2e-296 1022.7 1140 49.4
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 4.8e-296 1021.5 1214 47.2
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 6.3e-296 1021.1 1120 49.7
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 8.2e-296 1020.8 1159 48.5
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 3.1e-295 1018.8 1160 48.3
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 9.1e-295 1017.3 1164 47.9
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 9.1e-295 1017.3 1135 48.7
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 2.0e-294 1016.1 1154 48.5
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 2.7e-294 1015.8 1154 48.4
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 1.0e-293 1013.8 1141 48.7
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 1.3e-293 1013.4 949 55.4
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 1.7e-293 1013.1 1148 49.1
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 1.6e-291 1006.5 1125 49.1
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 3.6e-291 1005.4 1158 47.8
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 1.0e-290 1003.8 1160 48.4
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.8e-290 1003.0 1125 48.9
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 2.2e-288 996.1 1148 48.8
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 1.8e-287 993.0 1141 48.6
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 2.7e-286 989.2 1131 48.5
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 1.3e-285 986.9 1204 47.8
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 1.6e-283 979.9 1124 47.8
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 2.1e-283 979.5 1129 47.1
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 3.0e-282 975.7 1119 49.1
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 6.8e-282 974.5 1070 48.8
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 8.8e-282 974.2 1118 48.7
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 8.8e-282 974.2 1118 48.7
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 2.6e-281 972.6 1109 48.3
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 4.4e-281 971.8 1114 48.7
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 9.8e-281 970.7 1110 48.8
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 4.9e-280 968.4 1201 45.7
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 6.3e-280 968.0 1129 48.5
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 1.2e-278 963.8 1109 48.4
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 1.3e-277 960.3 1109 47.8
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 1.7e-277 959.9 1169 46.8
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 8.6e-277 957.6 1128 47.8
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 1.5e-276 956.8 1033 51.0
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 1.6e-275 953.4 1118 47.8
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 1.4e-274 950.3 1124 47.7
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 1.4e-274 950.3 1130 47.3
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 2.3e-274 949.5 1144 47.2
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 1.7e-272 943.3 1115 48.1
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 2.2e-272 943.0 1191 46.4
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 9.2e-271 937.6 988 51.1
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 3.9e-269 932.2 1122 47.2
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 1.1e-268 930.6 1118 46.9
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 1.5e-268 930.2 1162 46.0
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 1.6e-267 926.8 1043 48.4
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 1.0e-266 924.1 987 50.3
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 5.8e-257 891.7 815 55.8
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 7.5e-257 891.3 1120 45.9
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.3e-256 890.6 977 50.3
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.9e-256 889.4 969 49.3
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 1.9e-252 876.7 989 48.4
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 1.7e-248 863.6 869 51.8
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 1.9e-236 823.5 936 48.1
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 2.0e-233 813.5 758 55.0
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 9.9e-225 784.6 1040 43.3
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 2.4e-210 736.9 658 57.6
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 9.4e-199 698.4 828 47.1
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 1.5e-196 691.0 844 45.4
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 5.8e-124 449.9 1605 27.5
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 7.6e-124 449.5 466 51.5
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 2.2e-123 448.0 1131 31.6
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 1.5e-119 435.3 431 54.5
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 3.0e-112 411.0 332 59.9
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 2.4e-106 391.3 1152 29.6
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 4.6e-105 387.1 512 44.9
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.7e-86 325.5 366 49.2
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 1.8e-77 295.4 301 53.2
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 5.2e-64 250.8 514 33.9
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 3.2e-58 231.5 230 55.2
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.8e-56 225.7 389 37.3
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 4.1e-45 188.0 235 44.3
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 4.5e-44 184.5 400 32.5
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.0e-43 183.3 254 41.7
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 8.3e-38 163.7 203 45.3
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.4e-37 162.2 234 45.7
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 5.4e-37 161.0 217 43.8
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.5e-34 152.9 175 46.3
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.5e-34 152.9 175 46.3
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.5e-34 152.9 175 46.3
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 9.5e-34 150.2 175 45.7
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.2e-33 149.8 175 45.7
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 1.6e-33 149.4 362 30.9
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 3.5e-28 131.7 207 40.6
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 3.9e-27 128.3 146 52.7
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 9.5e-26 123.6 245 34.7
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.6e-25 121.7 175 41.1
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 4.4e-23 114.8 103 58.3
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 2.1e-20 105.9 306 28.1
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 2.7e-20 105.5 215 35.3
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 3.5e-20 105.1 215 35.3
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 5.1e-19 101.3 215 34.9
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.9e-13 82.8 79 45.6
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.4e-13 82.4 240 23.8
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 2.1e-12 79.3 55 65.5
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 5.6e-10 71.2 133 35.3
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 1.6e-09 69.7 56 51.8
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 1.8e-08 66.2 80 47.5
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 4.9e-06 58.2 76 46.1


User provided reference genes

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