Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 7.1e-99 364.0 193 100.0
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 9.8e-32 141.0 199 42.7
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 6.3e-31 138.3 176 40.9
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 1.4e-30 137.1 178 42.1
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 1.4e-25 120.6 187 33.7
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 1.8e-25 120.2 182 35.2
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 1.5e-24 117.1 186 34.9
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 3.4e-24 115.9 182 34.6
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 7.5e-24 114.8 184 34.2
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 2.2e-23 113.2 181 33.7
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 2.2e-23 113.2 183 32.8
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 3.7e-23 112.5 181 34.8
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 3.7e-23 112.5 181 34.8
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 3.7e-23 112.5 183 32.2
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 4.9e-23 112.1 182 33.5
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 8.3e-23 111.3 183 33.9
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.1e-22 110.9 185 33.0
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.1e-22 110.9 185 33.0
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 1.1e-22 110.9 181 33.7
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 1.1e-22 110.9 181 34.3
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 1.4e-22 110.5 181 34.8
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.4e-22 110.5 189 34.4
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 1.4e-22 110.5 186 33.9
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 1.9e-22 110.2 146 34.9
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 2.4e-22 109.8 180 35.0
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 2.4e-22 109.8 151 37.7
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 2.4e-22 109.8 184 32.6
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 2.4e-22 109.8 187 32.6
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 3.2e-22 109.4 181 34.8
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 3.2e-22 109.4 181 34.8
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 4.1e-22 109.0 182 32.4
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 5.4e-22 108.6 180 32.2
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 5.4e-22 108.6 184 32.1
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 5.4e-22 108.6 184 32.6
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 5.4e-22 108.6 185 30.3
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 7.0e-22 108.2 180 33.3
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 7.0e-22 108.2 160 34.4
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 7.0e-22 108.2 189 33.9
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 7.0e-22 108.2 185 31.9
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 7.0e-22 108.2 182 32.4
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 7.0e-22 108.2 183 33.3
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 7.0e-22 108.2 185 34.1
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 9.2e-22 107.8 181 33.7
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 9.2e-22 107.8 185 30.8
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 9.2e-22 107.8 182 31.9
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 1.2e-21 107.5 138 35.5
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 1.2e-21 107.5 172 33.7
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.6e-21 107.1 186 32.3
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 2.0e-21 106.7 184 31.5
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 2.0e-21 106.7 183 33.3
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.5e-21 105.9 148 37.8
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 3.5e-21 105.9 179 30.7
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 3.5e-21 105.9 179 33.5
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 3.5e-21 105.9 186 31.7
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 4.6e-21 105.5 164 33.5
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 4.6e-21 105.5 179 33.0
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 4.6e-21 105.5 183 32.8
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 6.0e-21 105.1 141 34.8
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 6.0e-21 105.1 192 31.8
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 6.0e-21 105.1 186 31.2
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 7.8e-21 104.8 183 31.7
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 7.8e-21 104.8 182 35.2
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 1.0e-20 104.4 188 32.4
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 1.0e-20 104.4 184 32.1
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 1.0e-20 104.4 164 35.4
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 1.3e-20 104.0 181 33.7
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 1.3e-20 104.0 184 32.6
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.3e-20 104.0 179 32.4
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 1.3e-20 104.0 149 35.6
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 1.7e-20 103.6 181 32.0
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 1.7e-20 103.6 181 31.5
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 1.7e-20 103.6 184 32.1
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 2.3e-20 103.2 147 35.4
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 2.3e-20 103.2 136 34.6
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 2.3e-20 103.2 140 35.7
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 2.3e-20 103.2 189 34.4
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 3.9e-20 102.4 151 31.8
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 3.9e-20 102.4 186 30.6
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 3.9e-20 102.4 190 30.5
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 5.0e-20 102.1 147 34.0
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 5.0e-20 102.1 190 31.1
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 5.0e-20 102.1 186 32.3
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 5.0e-20 102.1 186 31.2
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 6.6e-20 101.7 187 31.0
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 6.6e-20 101.7 181 34.3
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 8.6e-20 101.3 181 30.9
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.5e-19 100.5 182 33.0
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.5e-19 100.5 182 33.0
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 1.5e-19 100.5 182 30.8
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 2.5e-19 99.8 182 33.0
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 3.3e-19 99.4 184 34.2
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 3.3e-19 99.4 183 31.7
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 3.3e-19 99.4 178 30.9
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 3.3e-19 99.4 182 30.2
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 4.3e-19 99.0 180 31.1
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 4.3e-19 99.0 204 30.9
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 4.3e-19 99.0 181 33.1
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 4.3e-19 99.0 183 30.6
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 9.5e-19 97.8 183 31.7
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 1.2e-18 97.4 204 30.9
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 1.2e-18 97.4 180 30.6
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 1.6e-18 97.1 184 31.0
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 1.6e-18 97.1 182 31.3
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 2.8e-18 96.3 160 30.6
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 3.6e-18 95.9 180 30.6
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 3.6e-18 95.9 180 30.6
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 3.6e-18 95.9 160 31.2
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 4.7e-18 95.5 189 30.2
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 6.2e-18 95.1 160 31.2
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 6.2e-18 95.1 132 40.2
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.8e-17 93.6 197 29.4
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 2.3e-17 93.2 178 28.7
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 5.2e-17 92.0 179 30.2
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 4.4e-16 89.0 135 34.8
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 2.2e-15 86.7 148 33.1
SMO356G0121 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 3.2e-14 82.8 183 34.4
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 1.2e-13 80.9 208 27.9
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.6e-13 80.5 188 28.7
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.6e-13 80.5 81 42.0
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 6.0e-13 78.6 144 31.9
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 5.6e-11 72.0 117 35.9
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 3.6e-10 69.3 193 29.5
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 1.9e-06 57.0 102 31.4
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 1.9e-06 57.0 97 27.8
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 3.2e-06 56.2 110 26.4
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 4.1e-06 55.8 89 29.2
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 5.4e-06 55.5 93 31.2
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 9.2e-06 54.7 93 28.0
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 9.2e-06 54.7 184 25.0


User provided reference genes

Program Settings